NZ_CP0101811..201930

MGE detailed information

MGE type: Conjugative plasmid        MGE length: 201930 bp
Accession: NZ_CP010181        Location: 1..201930         Organism: Escherichia coli strain M1       Replicon: plasmid A


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RG54_RS25930 () 1309..1935 + 627 WP_000587689.1 ParA family plasmid-partitioning AAA ATPase -
RG54_RS28460 () 1932..2234 + 303 WP_046201803.1 hypothetical protein -
RG54_RS25950 () 2622..3682 + 1061 Protein_3 IS3 family transposase ISBcen15 Transposase
RG54_RS25955 () 4115..4771 + 657 WP_046201804.1 GntR family transcriptional regulator -
RG54_RS25960 () 4822..5586 - 765 WP_046201805.1 5-keto-D-gluconate 5-reductase VF
RG54_RS25965 () 5610..6074 - 465 WP_046201806.1 YhcH/YjgK/YiaL family protein -
RG54_RS25970 () 6086..7021 - 936 WP_046201807.1 sugar kinase -
RG54_RS25975 () 7018..7989 - 972 WP_046201808.1 C-terminal binding protein -
RG54_RS25980 () 8282..9556 + 1275 WP_046201809.1 MFS transporter -
RG54_RS25990 () 10074..10475 - 402 WP_001398199.1 type II toxin-antitoxin system toxin endoribonuclease PemK -
RG54_RS28170 () 10408..10665 - 258 WP_000557619.1 type II toxin-antitoxin system antitoxin PemI -
RG54_RS26000 () 10758..11411 - 654 WP_046201810.1 CPBP family intramembrane metalloprotease -
RG54_RS28180 () 11732..11842 + 111 Protein_13 IS481 family transposase -
RG54_RS26010 () 11988..15917 - 3930 WP_046201811.1 Serine protease EspC VF
RG54_RS26015 () 16461..16859 - 399 WP_046201812.1 hypothetical protein -
RG54_RS26020 () 16871..17224 - 354 WP_052734131.1 hypothetical protein -
RG54_RS28610 () 17221..17475 - 255 WP_046201813.1 hypothetical protein -
RG54_RS26025 () 17594..18013 - 420 WP_046201814.1 Exc2 family lipoprotein -
RG54_RS28185 () 18565..18957 + 393 Protein_19 hypothetical protein -
RG54_RS26035 () 19044..19694 + 651 WP_000993925.1 IS66 family transposase IS679 Transposase
RG54_RS26040 () 19694..20041 + 348 WP_000623562.1 IS66 family transposase ISCro1 Transposase
RG54_RS26045 () 20061..21632 + 1572 WP_046201816.1 IS66 family transposase ISCro1 Transposase
RG54_RS26050 () 21763..22185 - 423 WP_046201817.1 DUF1380 family protein -
RG54_RS26055 () 22232..22534 - 303 WP_139108889.1 antirestriction protein -
RG54_RS28465 () 22841..23560 - 720 Protein_25 hypothetical protein -
RG54_RS26070 () 23721..24890 + 1170 WP_046201818.1 IS200-IS605 family transposase ISEc46 Transposase
RG54_RS26075 () 24930..25103 + 174 Protein_27 DUF4113 domain-containing protein -
RG54_RS26080 () 25244..26206 - 963 WP_046201819.1 ParB/RepB/Spo0J family partition protein -
RG54_RS26085 () 26203..27408 - 1206 WP_000817642.1 Plasmid partition protein A VF
RG54_RS26095 () 27782..27994 + 213 WP_000402944.1 hypothetical protein -
RG54_RS26100 () 28167..28418 + 252 WP_001132895.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin Detail
RG54_RS26105 () 28415..28702 + 288 WP_001270421.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
RG54_RS26110 () 28716..28975 + 260 Protein_33 hypothetical protein -
RG54_RS26115 () 28988..29278 + 291 WP_046201820.1 hypothetical protein -
RG54_RS28190 () 29325..29692 + 368 Protein_35 IS3 family transposase ISKpn37 Transposase
RG54_RS26135 () 30336..31313 + 978 WP_000361612.1 RepB family plasmid replication initiator protein -
RG54_RS26140 () 31592..32332 - 741 WP_046201823.1 tyrosine-type recombinase/integrase -
RG54_RS26145 () 32453..32614 - 162 WP_064756529.1 hypothetical protein -
RG54_RS27600 () 32926..33878 - 953 Protein_39 IS630 family transposase ISSpu2 Transposase
RG54_RS26170 () 34341..34844 - 504 WP_000450723.1 hypothetical protein -
RG54_RS26175 () 35637..36113 + 477 WP_000072543.1 hypothetical protein VF
RG54_RS26180 () 36116..37594 + 1479 WP_000150697.1 hypothetical protein VF
RG54_RS26185 () 37604..38122 + 519 WP_046201825.1 hypothetical protein -
RG54_RS26190 () 38130..38552 + 423 WP_046201826.1 lysozyme family protein -
RG54_RS26195 () 38545..40347 + 1803 WP_046201827.1 type VI secretion system baseplate subunit TssF -
RG54_RS26200 () 40338..41270 + 933 WP_000268393.1 type VI secretion system baseplate subunit TssG -
RG54_RS26205 () 41283..43265 + 1983 WP_073520792.1 type VI secretion system tip protein VgrG -
RG54_RS26210 () 43276..43743 + 468 WP_000133489.1 hypothetical protein -
RG54_RS26215 () 43753..44052 + 300 WP_032246098.1 PAAR domain-containing protein -
RG54_RS26220 () 44056..45132 + 1077 WP_049590598.1 hypothetical protein VF
RG54_RS26225 () 45140..45682 + 543 WP_000152800.1 type VI secretion lipoprotein TssJ -
RG54_RS26230 () 45701..47083 + 1383 WP_073520793.1 type VI secretion system baseplate subunit TssK -
RG54_RS26240 () 47436..48050 + 615 WP_046201718.1 DotU family type IV/VI secretion system protein -
RG54_RS26245 () 48057..51461 + 3405 WP_073520794.1 type VI secretion protein -
RG54_RS26250 () 51465..53996 + 2532 WP_073520795.1 Protein ClpV1 VF
RG54_RS26255 () 54669..55808 + 1140 WP_073520796.1 type VI secretion system ImpA family N-terminal domain-containing protein -
RG54_RS26260 () 56308..56898 + 591 WP_073520797.1 hypothetical protein VF
RG54_RS28205 () 57181..57303 + 123 Protein_58 IS1 family transposase -
RG54_RS27615 () 57567..58163 + 597 WP_077787744.1 hypothetical protein -
RG54_RS26270 () 58172..58644 - 473 Protein_60 IS3 family transposase IS1351 Transposase
RG54_RS26275 () 58658..58792 + 135 Protein_61 transposase -
RG54_RS27620 () 59378..59599 + 222 WP_024179415.1 hypothetical protein -
RG54_RS28615 () 59813..59905 - 93 Protein_63 IS21 family transposase ISEc12 Transposase
RG54_RS26290 () 60153..60382 + 230 Protein_64 alpha/beta hydrolase -
RG54_RS27625 () 60606..60969 + 364 Protein_65 helix-turn-helix domain containing protein -
RG54_RS28210 () 60973..61185 + 213 Protein_66 IS21 family transposase -
RG54_RS26305 () 61192..61560 - 369 WP_032246119.1 hypothetical protein -
RG54_RS26310 () 62461..62568 - 108 Protein_68 IS3 family transposase -
RG54_RS26315 () 62571..63070 - 500 Protein_69 transposase -
RG54_RS26320 () 63111..63302 + 192 Protein_70 recombinase family protein -
RG54_RS26330 () 63565..63795 - 231 WP_046201726.1 hypothetical protein -
RG54_RS26335 () 64035..64160 - 126 Protein_72 IS66 family transposase IS682 Transposase
RG54_RS26340 () 64157..64591 - 435 WP_046201727.1 IS66 family transposase ISEc43 Transposase
RG54_RS27630 () 65161..65573 - 413 Protein_74 IS21 family transposase ISEc62 Transposase
RG54_RS26350 () 66003..69767 + 3765 WP_073520799.1 Serine protease EspC VF
RG54_RS26355 () 69850..70142 + 293 Protein_76 hypothetical protein VF
RG54_RS26360 () 70825..71325 - 501 WP_034173271.1 helix-turn-helix transcriptional regulator -
RG54_RS26365 () 71354..71836 - 483 WP_046201729.1 DNA-directed RNA polymerase sigma-70 factor -
RG54_RS26370 () 71958..76787 - 4830 WP_073520800.1 RTX toxin -
RG54_RS26375 () 76992..78239 - 1248 WP_046201730.1 HlyD family efflux transporter periplasmic adaptor subunit -
RG54_RS26380 () 78299..80446 - 2148 WP_000835433.1 Toxin RTX-I translocation ATP-binding protein VF
RG54_RS26385 () 80471..81712 - 1242 WP_046201731.1 TolC family protein -
RG54_RS26390 () 81775..82068 - 294 WP_071886270.1 Major pilu subunit operon regulatory protein PapB VF
RG54_RS27635 () 83371..83560 - 190 Protein_84 site-specific integrase -
RG54_RS26405 () 84067..84282 + 216 Protein_85 TIGR00156 family protein -
RG54_RS26410 () 84313..84731 - 419 Protein_86 Tn3 family transposase -
RG54_RS26415 () 85200..86045 - 846 WP_052734128.1 AraC family transcriptional regulator -
RG54_RS26420 () 86411..86995 + 585 WP_077787746.1 type 1 fimbrial protein -
RG54_RS26425 () 87102..87821 + 720 WP_073520801.1 Chaperone protein FocC VF
RG54_RS26430 () 87843..90353 + 2511 WP_046201734.1 Outer membrane usher protein FimD VF
RG54_RS26435 () 90363..91274 + 912 WP_139108882.1 fimbrial protein -
RG54_RS26440 () 91356..91664 + 309 WP_046201735.1 Cyclic di-GMP phosphodiesterase PdeL VF
RG54_RS28620 () 91955..92263 - 309 Protein_93 hemagglutinin -
RG54_RS26460 () 92899..102591 - 9693 WP_046201737.1 tRNA nuclease CdiA VF
RG54_RS26465 () 102604..104376 - 1773 WP_046201738.1 Hemolysin transporter protein ShlB VF
RG54_RS26470 () 104599..104847 - 249 Protein_96 DNA-binding protein -
RG54_RS26475 () 104933..105367 + 435 WP_053265047.1 IS66 family transposase ISEc43 Transposase
RG54_RS26480 () 105364..105669 + 306 WP_000624654.1 IS66 family transposase IS682 Transposase
RG54_RS27640 () 105745..107287 + 1543 Protein_99 IS66 family transposase -
RG54_RS26500 () 107318..107580 + 263 Protein_100 hypothetical protein -
RG54_RS26505 () 107682..108691 - 1010 Protein_101 IS3 family transposase IS3F Transposase
RG54_RS26515 () 108897..109127 + 231 Protein_102 IS1 family transposase IS1N Transposase
RG54_RS26520 () 109319..109897 + 579 WP_073520802.1 Tn3 family transposase ISPsy39 Transposase
RG54_RS26525 () 109890..110162 + 273 WP_046201741.1 hypothetical protein -
RG54_RS26530 () 110206..110534 - 329 Protein_105 IS3 family transposase IS911 Transposase
RG54_RS28230 () 110938..111006 + 69 Protein_106 3'-5' exonuclease -
RG54_RS26535 () 111279..111632 - 354 WP_171819440.1 cytochrome b562 family protein -
RG54_RS26540 () 111712..113922 - 2211 WP_073520803.1 Catalase-peroxidase VF
RG54_RS26545 () 114268..118380 - 4113 WP_073520804.1 Serine protease pic autotransporter VF
RG54_RS26550 () 119644..120308 + 665 Protein_110 hypothetical protein -
RG54_RS26555 () 120451..120750 - 300 WP_046201747.1 type II toxin-antitoxin system RelE/ParE family toxin -
RG54_RS26560 () 120740..121003 - 264 WP_046201748.1 hypothetical protein -
RG54_RS26580 () 121942..122799 - 858 WP_034173827.1 incFII family plasmid replication initiator RepA -
RG54_RS26585 () 122792..122866 - 75 WP_001365705.1 RepA leader peptide Tap -
RG54_RS26595 () 123113..123361 - 249 WP_034173828.1 replication regulatory protein RepA -
RG54_RS26605 () 124094..125203 - 1110 WP_034173829.1 N-acetylneuraminate epimerase -
RG54_RS26610 () 125213..125923 - 711 WP_000748140.1 N-acetylneuraminic acid channel protein -
RG54_RS26615 () 125977..126798 - 822 WP_052734129.1 alpha/beta hydrolase -
RG54_RS26620 () 126814..128280 - 1467 WP_034173830.1 MFS transporter -
RG54_RS26625 () 128351..129226 - 876 WP_034173861.1 N-acetylmannosamine kinase -
RG54_RS26630 () 129286..130185 - 900 WP_046201838.1 N-acetylneuraminate lyase -
RG54_RS26635 () 130322..131407 - 1086 WP_077787749.1 hypothetical protein -
RG54_RS26640 () 131477..132205 + 729 WP_046201750.1 transcriptional regulator NanR -
RG54_RS26645 () 132230..133114 - 885 WP_034173833.1 alpha/beta hydrolase -
RG54_RS28625 () 133261..133362 + 102 Protein_125 transposase -
RG54_RS26660 () 133980..134540 - 561 WP_046201751.1 fertility inhibition protein FinO -
RG54_RS26665 () 134595..135329 - 735 WP_075262006.1 type-F conjugative transfer system pilin acetylase TraX -
RG54_RS26670 () 135352..135783 - 432 WP_000451345.1 hypothetical protein -
RG54_RS26675 () 135833..141103 - 5271 Protein_129 Multifunctional conjugation protein TraI Relaxase
RG54_RS26680 () 141103..143310 - 2208 WP_046201753.1 type IV conjugative transfer system coupling protein TraD -
RG54_RS26685 () 143562..144293 - 732 WP_046201754.1 complement resistance protein TraT -
RG54_RS26690 () 144307..144816 - 510 WP_000628099.1 conjugal transfer entry exclusion protein TraS -
RG54_RS26695 () 144813..147659 - 2847 WP_049590596.1 conjugal transfer mating pair stabilization protein TraG -
RG54_RS26700 () 147656..149029 - 1374 WP_046201756.1 conjugal transfer protein TraH -
RG54_RS26705 () 149016..149441 - 426 WP_073520805.1 F-type conjugal transfer protein TrbF -
RG54_RS26710 () 149362..149736 - 375 WP_073520806.1 P-type conjugative transfer protein TrbJ -
RG54_RS26715 () 149666..150211 - 546 WP_046201758.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
RG54_RS26720 () 150198..150479 - 282 WP_073520807.1 type-F conjugative transfer system pilin chaperone TraQ -
RG54_RS26725 () 150545..150991 - 447 WP_046201760.1 hypothetical protein -
RG54_RS26730 () 151077..151442 - 366 WP_021572669.1 hypothetical protein -
RG54_RS26735 () 151456..152199 - 744 WP_046201761.1 type-F conjugative transfer system pilin assembly protein TraF -
RG54_RS26740 () 152192..152449 - 258 WP_046201762.1 conjugal transfer protein TrbE -
RG54_RS26745 () 152476..154305 - 1830 WP_046201763.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
RG54_RS26750 () 154302..154724 - 423 WP_046201764.1 HNH endonuclease -
RG54_RS26755 () 154750..155121 - 372 WP_071886277.1 hypothetical protein -
RG54_RS26760 () 155118..155756 - 639 WP_046201765.1 type-F conjugative transfer system pilin assembly protein TrbC -
RG54_RS26765 () 155949..156188 + 240 WP_001066128.1 hypothetical protein -
RG54_RS28240 () 156185..156364 - 180 WP_058153243.1 hypothetical protein -
RG54_RS26770 () 156385..157377 - 993 WP_046201766.1 conjugal transfer pilus assembly protein TraU -
RG54_RS26775 () 157374..158006 - 633 WP_046201767.1 type-F conjugative transfer system protein TraW -
RG54_RS26780 () 158003..158389 - 387 WP_046201768.1 type-F conjugative transfer system protein TrbI -
RG54_RS26785 () 158386..161016 - 2631 WP_049590594.1 type IV secretion system protein TraC -
RG54_RS28245 () 161149..161496 - 348 WP_046201769.1 hypothetical protein -
RG54_RS26795 () 161524..161742 - 219 WP_046201770.1 hypothetical protein -
RG54_RS26800 () 161822..162295 - 474 WP_073520808.1 hypothetical protein -
RG54_RS26805 () 162288..162701 - 414 WP_046201772.1 hypothetical protein -
RG54_RS26810 () 162694..162915 - 222 WP_046201773.1 conjugal transfer protein TraR -
RG54_RS26815 () 163050..163565 - 516 WP_046201774.1 type IV conjugative transfer system lipoprotein TraV -
RG54_RS26820 () 163562..163813 - 252 WP_046201775.1 conjugal transfer protein TrbG -
RG54_RS26825 () 163825..164160 - 336 WP_139108888.1 conjugal transfer protein TrbD -
RG54_RS26830 () 164114..164695 - 582 WP_071886278.1 conjugal transfer protein TraP -
RG54_RS26835 () 164664..166112 - 1449 WP_046201777.1 conjugal transfer protein TraB -
RG54_RS26840 () 166112..166816 - 705 WP_149026042.1 type-F conjugative transfer system secretin TraK -
RG54_RS26845 () 166827..167393 - 567 WP_046201779.1 type IV conjugative transfer system protein TraE -
RG54_RS26850 () 167415..167726 - 312 WP_046201780.1 type IV conjugative transfer system protein TraL -
RG54_RS26855 () 167741..168106 - 366 WP_046201781.1 type IV conjugative transfer system pilin TraA -
RG54_RS26860 () 168139..168366 - 228 WP_071886279.1 conjugal transfer relaxosome protein TraY -
RG54_RS26865 () 168491..169144 - 654 WP_046201782.1 conjugal transfer protein TraJ -
RG54_RS26870 () 169337..169720 - 384 WP_046201845.1 relaxosome protein TraM -
RG54_RS26880 () 170043..170645 + 603 WP_077787755.1 hypothetical protein VF
RG54_RS26885 () 170941..171762 - 822 WP_046201784.1 DUF945 domain-containing protein -
RG54_RS26890 () 171881..172168 - 288 WP_046201785.1 hypothetical protein -
RG54_RS26900 () 172324..172626 - 303 WP_046201786.1 hypothetical protein -
RG54_RS28255 () 172650..172856 - 207 WP_046201787.1 hypothetical protein -
RG54_RS26920 () 173315..174886 - 1572 WP_073520623.1 IS66 family transposase ISCro1 Transposase
RG54_RS26925 () 174906..175253 - 348 WP_000624622.1 IS66 family transposase ISCro1 Transposase
RG54_RS26930 () 175253..175900 - 648 WP_077897823.1 IS66 family transposase IS679 Transposase
RG54_RS26935 () 176241..176402 - 162 WP_000775238.1 type I toxin-antitoxin system Hok family toxin -
- () 176448..176660 - 213 NuclAT_0 - -
- () 176448..176660 - 213 NuclAT_0 - -
- () 176448..176660 - 213 NuclAT_0 - -
- () 176448..176660 - 213 NuclAT_0 - -
RG54_RS26945 () 176609..176923 - 315 WP_000872077.1 hypothetical protein -
RG54_RS26950 () 176920..177639 - 720 WP_046201788.1 plasmid SOS inhibition protein A -
RG54_RS26955 () 177636..178070 - 435 WP_046201789.1 conjugation system SOS inhibitor PsiB -
RG54_RS26960 () 178125..180083 - 1959 WP_046201790.1 ParB/RepB/Spo0J family partition protein -
RG54_RS26965 () 180144..180377 - 234 WP_046201791.1 DUF905 family protein -
RG54_RS26970 () 180440..180973 - 534 WP_046201792.1 single-stranded DNA-binding protein -
RG54_RS26980 () 181275..181736 + 462 WP_073520809.1 hypothetical protein -
RG54_RS26990 () 181822..182385 - 564 WP_046201795.1 class I SAM-dependent methyltransferase -
RG54_RS26995 () 182432..183793 - 1362 WP_046201796.1 DUF3560 domain-containing protein -
RG54_RS27000 () 183845..184075 - 231 WP_000218642.1 hypothetical protein -
RG54_RS27020 () 185058..185249 - 192 WP_001027495.1 hypothetical protein -
RG54_RS27025 () 185246..185668 - 423 WP_032167172.1 DUF1380 family protein -
RG54_RS27030 () 185715..186017 - 303 WP_139108892.1 antirestriction protein -
RG54_RS28470 () 186552..187322 - 771 WP_046201798.1 hypothetical protein -
RG54_RS27045 () 187367..187801 - 435 WP_000274404.1 DUF1380 family protein -
RG54_RS27050 () 187813..188034 - 222 WP_046201846.1 hypothetical protein -
RG54_RS27055 () 188034..188687 - 654 WP_046201799.1 DNA methylase -
RG54_RS27065 () 189267..190967 + 1701 WP_046201411.1 group II intron reverse transcriptase/maturase -
RG54_RS27070 () 191197..191501 - 305 Protein_197 hypothetical protein -
RG54_RS27075 () 191505..192407 - 903 WP_077787757.1 DUF1281 domain-containing protein -
RG54_RS27085 () 192825..193073 + 249 WP_000618110.1 DinI-like family protein -
RG54_RS27090 () 193070..193507 + 438 WP_046201801.1 translesion error-prone DNA polymerase V autoproteolytic subunit -
RG54_RS27095 () 193507..193635 + 129 Protein_201 protein ImpB -
RG54_RS27100 () 193680..195908 - 2229 WP_032325774.1 Mov34/MPN/PAD-1 family protein -
RG54_RS27105 () 195905..197086 - 1182 WP_032325773.1 hypothetical protein -
RG54_RS27110 () 197222..198076 + 855 WP_032325772.1 WYL domain-containing protein -
RG54_RS27115 () 198089..198607 + 519 WP_000993248.1 hypothetical protein -
RG54_RS28275 () 198654..199877 - 1224 WP_089557530.1 tyrosine-type recombinase/integrase -
RG54_RS28280 () 199956..200864 - 909 Protein_207 site-specific integrase -
RG54_RS27125 () 200861..201859 - 999 WP_032325769.1 IS91 family transposase ISMno24 Transposase

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance