MGE detailed information
MGE type: Prophage MGE length: 62397 bp
Accession: NZ_CP010180 Location: 808173..870569 Organism: Escherichia coli strain M1 Replicon: chromosome
Accession: NZ_CP010180 Location: 808173..870569 Organism: Escherichia coli strain M1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG54_RS04290 () | 803613..804971 | - | 1359 | WP_000826769.1 | two-component system sensor histidine kinase HprS | - |
| RG54_RS04295 () | 804971..805642 | - | 672 | WP_001362894.1 | response regulator transcription factor HprR | - |
| RG54_RS04300 () | 805775..806188 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| RG54_RS04305 () | 806297..807301 | + | 1005 | WP_000740094.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| RG54_RS04310 () | 807302..807937 | + | 636 | WP_001240105.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| RG54_RS04315 () | 808194..808844 | + | 651 | WP_001007749.1 | metal-binding protein ZinT | - |
| RG54_RS04320 () | 809187..809717 | + | 531 | WP_001079074.1 | cytochrome b | - |
| RG54_RS04330 () | 810558..810872 | + | 315 | WP_073520589.1 | YkgJ family cysteine cluster protein | - |
| RG54_RS04335 () | 811034..811708 | - | 675 | WP_073520590.1 | DUF4376 domain-containing protein | - |
| RG54_RS04340 () | 811705..811929 | - | 225 | WP_034172970.1 | tail fiber assembly protein | - |
| RG54_RS04345 () | 811939..813345 | - | 1407 | WP_073520591.1 | ISNCY family transposase KIS | Transposase |
| RG54_RS04350 () | 813487..813627 | - | 141 | WP_073520592.1 | Hok/Gef family protein | - |
| RG54_RS04355 () | 813804..817281 | - | 3478 | Protein_794 | host specificity protein J | - |
| RG54_RS04360 () | 817527..818165 | - | 639 | WP_072019665.1 | tail assembly protein | - |
| RG54_RS04365 () | 818063..818806 | - | 744 | WP_073520772.1 | C40 family peptidase | - |
| RG54_RS04370 () | 818812..819510 | - | 699 | WP_073520593.1 | phage minor tail protein L | - |
| RG54_RS04375 () | 819510..819839 | - | 330 | WP_053265008.1 | phage tail protein | - |
| RG54_RS04380 () | 819836..822451 | - | 2616 | WP_073520594.1 | phage tail tape measure protein | - |
| RG54_RS04385 () | 822441..822830 | - | 390 | WP_073520595.1 | phage tail assembly protein T | - |
| RG54_RS04390 () | 822857..823273 | - | 417 | WP_073520596.1 | phage minor tail protein G | - |
| RG54_RS04395 () | 823292..824050 | - | 759 | WP_073520597.1 | phage tail protein | - |
| RG54_RS04400 () | 824058..824456 | - | 399 | WP_073520598.1 | phage tail protein | - |
| RG54_RS04405 () | 824466..825092 | - | 627 | WP_073520599.1 | phage tail protein | - |
| RG54_RS04410 () | 825095..825376 | - | 282 | WP_073520600.1 | DNA breaking-rejoining protein | - |
| RG54_RS04415 () | 825369..825695 | - | 327 | WP_073520601.1 | DUF2190 family protein | - |
| RG54_RS04420 () | 825783..827807 | - | 2025 | WP_149026032.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| RG54_RS04425 () | 827752..829257 | - | 1506 | WP_073520602.1 | phage portal protein | - |
| RG54_RS04430 () | 829257..829469 | - | 213 | WP_053265017.1 | hypothetical protein | - |
| RG54_RS04435 () | 829466..831589 | - | 2124 | WP_073520603.1 | phage terminase large subunit family protein | - |
| RG54_RS04440 () | 831586..832062 | - | 477 | WP_073520604.1 | DUF1441 family protein | - |
| RG54_RS04445 () | 832706..833185 | + | 480 | WP_073520605.1 | DUF1398 family protein | - |
| RG54_RS27730 () | 833401..833586 | - | 186 | WP_149026033.1 | Rz1 family lipoprotein | - |
| RG54_RS04455 () | 834105..834638 | - | 534 | WP_073520607.1 | lysozyme | - |
| RG54_RS04460 () | 834643..834858 | - | 216 | WP_000284510.1 | class II holin family protein | - |
| RG54_RS04465 () | 834936..835241 | - | 306 | WP_073520608.1 | DUF826 domain-containing protein | - |
| RG54_RS04470 () | 835267..835443 | - | 177 | WP_073520609.1 | DUF1378 family protein | - |
| RG54_RS04475 () | 835587..837530 | - | 1944 | WP_073520610.1 | DUF1737 domain-containing protein | - |
| RG54_RS04480 () | 838340..838768 | - | 429 | WP_053265055.1 | cell envelope integrity protein TolA | - |
| RG54_RS04500 () | 839451..840329 | + | 879 | WP_000193722.1 | hypothetical protein | - |
| RG54_RS04510 () | 840579..840965 | + | 387 | WP_000024152.1 | hypothetical protein | - |
| RG54_RS04515 () | 840979..841329 | - | 351 | WP_000532208.1 | antitermination protein | - |
| RG54_RS04520 () | 841319..841696 | - | 378 | WP_029397194.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RG54_RS04525 () | 841697..842752 | - | 1056 | WP_073520612.1 | DUF968 domain-containing protein | - |
| RG54_RS04530 () | 842754..843032 | - | 279 | WP_024175747.1 | hypothetical protein | - |
| RG54_RS04535 () | 843200..843355 | - | 156 | WP_000813256.1 | type I toxin-antitoxin system toxin HokD | - |
| RG54_RS28310 () | 843623..843790 | + | 168 | WP_187469051.1 | hypothetical protein | - |
| RG54_RS27760 () | 843917..844132 | - | 216 | Protein_828 | DUF551 domain-containing protein | - |
| RG54_RS27765 () | 844256..844585 | - | 330 | Protein_829 | hypothetical protein | - |
| RG54_RS04545 () | 844621..844833 | - | 213 | WP_053264976.1 | hypothetical protein | - |
| RG54_RS04550 () | 844879..845235 | - | 357 | WP_077897822.1 | hypothetical protein | - |
| RG54_RS04555 () | 845237..845773 | - | 537 | WP_001514296.1 | hypothetical protein | - |
| RG54_RS04560 () | 845766..846065 | - | 300 | WP_001266136.1 | DUF4406 domain-containing protein | - |
| RG54_RS04565 () | 846062..846484 | - | 423 | WP_073520614.1 | DUF977 family protein | - |
| RG54_RS04570 () | 846500..847213 | - | 714 | WP_073520615.1 | DUF1627 domain-containing protein | - |
| RG54_RS04575 () | 847236..847988 | - | 753 | WP_073520616.1 | IS21 family transposase ISLisp1 | Transposase |
| RG54_RS04580 () | 847995..849065 | - | 1071 | WP_073520617.1 | phage replisome organizer | - |
| RG54_RS04585 () | 849137..849562 | - | 426 | WP_073520618.1 | Rha family transcriptional regulator | - |
| RG54_RS04590 () | 849559..849861 | - | 303 | WP_000172735.1 | transcriptional regulator | - |
| RG54_RS04595 () | 849958..850329 | + | 372 | WP_135405263.1 | hypothetical protein | - |
| RG54_RS04600 () | 850350..850541 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| RG54_RS04605 () | 850543..850821 | + | 279 | WP_061892358.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RG54_RS04615 () | 851111..851266 | + | 156 | WP_073520775.1 | DUF1391 family protein | - |
| RG54_RS04625 () | 851426..851644 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| RG54_RS04635 () | 852212..852400 | + | 189 | WP_000854558.1 | cell division inhibition protein DicB | - |
| RG54_RS04640 () | 852397..852588 | + | 192 | WP_001070255.1 | DUF1482 family protein | - |
| RG54_RS04645 () | 852682..855123 | + | 2442 | WP_073520620.1 | exonuclease | - |
| RG54_RS04650 () | 855182..855385 | + | 204 | WP_000096344.1 | DUF4224 domain-containing protein | - |
| RG54_RS04655 () | 855385..856410 | + | 1026 | WP_073520621.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| RG54_RS04665 () | 856646..857443 | + | 798 | WP_001300307.1 | DgsA anti-repressor MtfA | - |
| RG54_RS04675 () | 857933..865009 | + | 7077 | WP_039264490.1 | inverse autotransporter adhesin YeeJ | - |
| RG54_RS04680 () | 865271..866323 | - | 1053 | WP_073520622.1 | glycosyltransferase family 9 protein | - |
| RG54_RS04685 () | 866638..867954 | + | 1317 | WP_000378564.1 | shikimate transporter | - |
| RG54_RS04690 () | 868056..869510 | + | 1455 | WP_001060244.1 | AMP nucleosidase | - |
| RG54_RS04695 () | 869853..870569 | + | 717 | WP_000532912.1 | transcriptional regulatory protein YeeN | VF |
| RG54_RS04710 () | 871198..872841 | - | 1644 | WP_122987664.1 | toxic metabolite efflux MATE transporter YeeO | - |
| RG54_RS04720 () | 872959..873909 | - | 951 | WP_001011013.1 | HTH-type transcriptional regulator Cbl | - |
| RG54_RS04725 () | 874011..874928 | - | 918 | WP_001011483.1 | nitrogen assimilation transcriptional regulator NAC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|