MGE detailed information
MGE type: Genomic_island MGE length: 37326 bp
Accession: NZ_CP010180 Location: 3248950..3286275 Organism: Escherichia coli strain M1 Replicon: chromosome
Accession: NZ_CP010180 Location: 3248950..3286275 Organism: Escherichia coli strain M1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG54_RS17015 () | 3244366..3245706 | - | 1341 | WP_070081117.1 | anaerobic C4-dicarboxylate transporter DcuB | - |
| RG54_RS17025 () | 3246277..3246996 | - | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
| RG54_RS17030 () | 3246993..3248624 | - | 1632 | WP_001216489.1 | sensor histidine kinase | - |
| RG54_RS27975 () | 3248753..3249504 | - | 752 | Protein_3043 | IS3 family transposase | - |
| RG54_RS17045 () | 3249907..3250479 | + | 573 | WP_000661408.1 | hypothetical protein | - |
| RG54_RS17050 () | 3250518..3251738 | + | 1221 | WP_001150579.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| RG54_RS17055 () | 3251731..3253893 | + | 2163 | WP_001395681.1 | peptidase domain-containing ABC transporter | - |
| RG54_RS17060 () | 3253945..3254175 | - | 231 | WP_089562688.1 | IS3 family transposase | - |
| RG54_RS27980 () | 3254635..3254751 | - | 117 | Protein_3048 | IS3 family transposase ISKpn1 | Transposase |
| RG54_RS17070 () | 3254831..3255349 | - | 519 | WP_000565927.1 | hypothetical protein | - |
| RG54_RS17075 () | 3255342..3255779 | - | 438 | WP_100224274.1 | hypothetical protein | VF |
| RG54_RS17080 () | 3255877..3256872 | - | 996 | WP_001395679.1 | hypothetical protein | - |
| RG54_RS17085 () | 3256892..3257593 | - | 702 | WP_000162908.1 | hypothetical protein | VF |
| RG54_RS17090 () | 3257586..3259943 | - | 2358 | WP_000695774.1 | hypothetical protein | VF |
| RG54_RS17095 () | 3260012..3260545 | - | 534 | WP_000733565.1 | hypothetical protein | VF |
| RG54_RS17100 () | 3260895..3264731 | + | 3837 | WP_001033999.1 | hypothetical protein | VF |
| RG54_RS17105 () | 3265638..3266468 | + | 831 | WP_001088100.1 | AraC family transcriptional regulator | - |
| RG54_RS17110 () | 3267629..3271558 | + | 3930 | WP_073520688.1 | hypothetical protein | VF |
| RG54_RS17115 () | 3271771..3272043 | + | 273 | WP_000405647.1 | N-acetyltransferase | - |
| RG54_RS17125 () | 3272270..3272566 | + | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| RG54_RS17130 () | 3272594..3272767 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| RG54_RS17135 () | 3272886..3274403 | - | 1518 | WP_001295087.1 | lysine--tRNA ligase | - |
| RG54_RS17140 () | 3274640..3276097 | - | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| RG54_RS17145 () | 3276156..3278303 | - | 2148 | WP_001100642.1 | lysine decarboxylase CadA | - |
| RG54_RS17150 () | 3278383..3279717 | - | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| RG54_RS17160 () | 3280083..3281621 | - | 1539 | WP_001187170.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| RG54_RS17170 () | 3282432..3283274 | - | 843 | WP_073520689.1 | DUF4942 domain-containing protein | - |
| RG54_RS17175 () | 3283359..3283556 | - | 198 | WP_073520690.1 | DUF957 domain-containing protein | - |
| RG54_RS17180 () | 3283568..3284056 | - | 489 | WP_000779175.1 | hypothetical protein | - |
| RG54_RS17185 () | 3284053..3284430 | - | 378 | WP_000854902.1 | TA system toxin CbtA family protein | Toxin Detail |
| RG54_RS17190 () | 3284477..3284851 | - | 375 | WP_001280952.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| RG54_RS17200 () | 3285014..3285235 | - | 222 | WP_000692311.1 | DUF987 domain-containing protein | - |
| RG54_RS17205 () | 3285298..3285774 | - | 477 | WP_001186726.1 | RadC family protein | - |
| RG54_RS17210 () | 3285790..3286275 | - | 486 | WP_000849591.1 | antirestriction protein | - |
| RG54_RS17215 () | 3286330..3287148 | - | 819 | WP_001234620.1 | DUF945 domain-containing protein | - |
| RG54_RS17220 () | 3287207..3288778 | - | 1572 | WP_073520623.1 | IS66 family transposase | - |
| RG54_RS17225 () | 3288798..3289145 | - | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| RG54_RS17230 () | 3289145..3289792 | - | 648 | WP_077897823.1 | IS66 family insertion sequence hypothetical protein | - |
| RG54_RS17240 () | 3289958..3290191 | - | 234 | WP_001119729.1 | DUF905 family protein | - |
| RG54_RS17245 () | 3290270..3290725 | - | 456 | WP_032186189.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|