MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 124633 bp
Accession: NZ_CP010180 Location: 1944613..2069245 Organism: Escherichia coli strain M1 Replicon: chromosome
Accession: NZ_CP010180 Location: 1944613..2069245 Organism: Escherichia coli strain M1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG54_RS10195 () | 1940703..1942838 | - | 2136 | WP_032178689.1 | ornithine decarboxylase | - |
| RG54_RS28540 () | 1943000..1943083 | - | 84 | WP_211180506.1 | protein YqgH | - |
| RG54_RS10205 () | 1943236..1943943 | + | 708 | WP_000234514.1 | DUF554 domain-containing protein | - |
| RG54_RS10215 () | 1944322..1945584 | + | 1263 | WP_073520642.1 | integrase arm-type DNA-binding domain-containing protein | - |
| RG54_RS10220 () | 1946876..1947154 | + | 279 | WP_073520776.1 | peroxidase | - |
| RG54_RS10225 () | 1947158..1948285 | + | 1128 | WP_073520643.1 | XRE family transcriptional regulator | - |
| RG54_RS10230 () | 1948338..1950125 | - | 1788 | WP_073520644.1 | hypothetical protein | - |
| RG54_RS28365 () | 1950195..1950344 | - | 150 | WP_157916178.1 | hypothetical protein | - |
| RG54_RS10235 () | 1950545..1950969 | - | 425 | Protein_1853 | phosphoadenosine phosphosulfate reductase | - |
| RG54_RS10240 () | 1951153..1951797 | - | 645 | WP_073520645.1 | hypothetical protein | - |
| RG54_RS10245 () | 1951997..1953443 | - | 1447 | Protein_1855 | AAA family ATPase | - |
| RG54_RS10250 () | 1953909..1955297 | - | 1389 | WP_073520646.1 | type VI secretion system ImpA family N-terminal domain-containing protein | - |
| RG54_RS10260 () | 1955723..1957468 | - | 1746 | WP_129542103.1 | AAA family ATPase | - |
| RG54_RS10265 () | 1957704..1958948 | - | 1245 | WP_073520648.1 | GIY-YIG nuclease family protein | - |
| RG54_RS10270 () | 1959104..1959505 | - | 402 | WP_073520649.1 | hypothetical protein | - |
| RG54_RS10280 () | 1959836..1960195 | - | 360 | WP_073520651.1 | DUF596 domain-containing protein | - |
| RG54_RS28370 () | 1960192..1960446 | - | 255 | WP_175406691.1 | hemagglutinin | - |
| RG54_RS28375 () | 1960543..1960785 | - | 243 | Protein_1862 | hypothetical protein | - |
| RG54_RS10290 () | 1960838..1961074 | - | 237 | WP_073520653.1 | hypothetical protein | - |
| RG54_RS10295 () | 1961713..1962048 | - | 336 | WP_073520654.1 | hypothetical protein | - |
| RG54_RS10300 () | 1962048..1963121 | - | 1074 | WP_187655886.1 | hypothetical protein | VF |
| RG54_RS10310 () | 1963132..1963383 | - | 252 | Protein_1866 | hypothetical protein | - |
| RG54_RS10315 () | 1963542..1963727 | - | 186 | WP_071531845.1 | hypothetical protein | - |
| RG54_RS10325 () | 1964201..1964656 | - | 456 | WP_073520655.1 | hypothetical protein | - |
| RG54_RS10330 () | 1964661..1965170 | - | 510 | WP_073520656.1 | hypothetical protein | - |
| RG54_RS10335 () | 1965429..1965818 | - | 390 | WP_064769067.1 | hypothetical protein | - |
| RG54_RS10345 () | 1965821..1975021 | - | 9201 | WP_077897826.1 | hypothetical protein | VF |
| RG54_RS10350 () | 1975037..1975564 | - | 528 | WP_073520657.1 | hypothetical protein | VF |
| RG54_RS10355 () | 1975574..1977226 | - | 1653 | WP_001376511.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| RG54_RS10360 () | 1977866..1978072 | + | 207 | WP_049590175.1 | DUF4222 domain-containing protein | - |
| RG54_RS10365 () | 1978125..1978358 | - | 234 | WP_053264776.1 | hypothetical protein | - |
| RG54_RS10370 () | 1978454..1979077 | - | 624 | WP_073520658.1 | DNA-binding protein | - |
| RG54_RS10375 () | 1979198..1979377 | - | 180 | WP_073519842.1 | hypothetical protein | - |
| RG54_RS10380 () | 1979383..1979796 | - | 414 | WP_073520659.1 | hypothetical protein | - |
| RG54_RS10385 () | 1979793..1980176 | - | 384 | WP_073520660.1 | hypothetical protein | - |
| RG54_RS10395 () | 1980436..1981005 | - | 570 | WP_021537662.1 | inovirus Gp2 family protein | - |
| RG54_RS10410 () | 1981725..1981937 | - | 213 | WP_021537663.1 | hemolysin expression modulator Hha | - |
| RG54_RS27300 () | 1982659..1982865 | + | 207 | WP_000211310.1 | AlpA family transcriptional regulator | - |
| RG54_RS10430 () | 1982960..1983562 | + | 603 | WP_149026034.1 | hypothetical protein | - |
| RG54_RS27310 () | 1984199..1984590 | + | 392 | Protein_1884 | IS21 family transposase ISEc62 | Transposase |
| RG54_RS10455 () | 1984594..1986047 | - | 1454 | Protein_1885 | IS66 family transposase ISEc23 | Transposase |
| RG54_RS10465 () | 1986081..1987618 | - | 1538 | Protein_1886 | IS66 family transposase ISSfl3 | Transposase |
| RG54_RS10470 () | 1987638..1987985 | - | 348 | WP_073520663.1 | IS66 family transposase ISSfl3 | Transposase |
| RG54_RS10475 () | 1987982..1988626 | - | 645 | WP_073520664.1 | IS66 family transposase ISCro1 | Transposase |
| RG54_RS10480 () | 1988675..1988845 | - | 171 | Protein_1889 | IS66 family transposase ISEc23 | Transposase |
| RG54_RS10485 () | 1988876..1989226 | - | 351 | WP_073520666.1 | IS66 family transposase ISEc23 | Transposase |
| RG54_RS10490 () | 1989223..1989648 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| RG54_RS10515 () | 1992665..1993537 | + | 873 | WP_073520669.1 | hypothetical protein | - |
| RG54_RS10520 () | 1993636..1994508 | + | 873 | WP_073520670.1 | GTPase family protein | - |
| RG54_RS10525 () | 1994842..1997964 | + | 3123 | WP_073520671.1 | autotransporter adhesin Ag43 | - |
| RG54_RS10530 () | 1998085..2000601 | + | 2517 | WP_073520672.1 | hypothetical protein | - |
| RG54_RS10535 () | 2000677..2001132 | + | 456 | WP_000581502.1 | hypothetical protein | - |
| RG54_RS10550 () | 2001416..2002234 | + | 819 | WP_001234639.1 | DUF945 domain-containing protein | - |
| RG54_RS10560 () | 2002573..2003052 | + | 480 | WP_000706981.1 | antirestriction protein | - |
| RG54_RS10565 () | 2003068..2003544 | + | 477 | WP_001186724.1 | RadC family protein | - |
| RG54_RS10570 () | 2003613..2003834 | + | 222 | WP_000692300.1 | DUF987 domain-containing protein | - |
| RG54_RS10580 () | 2003997..2004365 | + | 369 | WP_001327592.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| RG54_RS10585 () | 2004455..2004832 | + | 378 | WP_073520673.1 | TA system toxin CbtA family protein | Toxin Detail |
| RG54_RS28380 () | 2004829..2005317 | + | 489 | Protein_1904 | hypothetical protein | - |
| RG54_RS10600 () | 2005337..2005534 | + | 198 | WP_000445282.1 | DUF957 domain-containing protein | - |
| RG54_RS10605 () | 2005619..2006461 | + | 843 | WP_073520781.1 | DUF4942 domain-containing protein | - |
| RG54_RS10610 () | 2006742..2007278 | - | 537 | WP_000942786.1 | hypothetical protein | VF |
| RG54_RS10615 () | 2007280..2008458 | - | 1179 | WP_032178690.1 | hypothetical protein | VF |
| RG54_RS10620 () | 2008455..2009432 | - | 978 | WP_000633238.1 | hypothetical protein | VF |
| RG54_RS10625 () | 2009435..2010034 | - | 600 | WP_001250465.1 | hypothetical protein | VF |
| RG54_RS10630 () | 2010031..2010402 | - | 372 | WP_000820104.1 | hypothetical protein | VF |
| RG54_RS10635 () | 2010399..2010962 | - | 564 | WP_001115154.1 | hypothetical protein | VF |
| RG54_RS10640 () | 2010966..2011421 | - | 456 | WP_001087296.1 | hypothetical protein | VF |
| RG54_RS10645 () | 2011438..2012661 | - | 1224 | WP_001173448.1 | hypothetical protein | VF |
| RG54_RS10650 () | 2012661..2014154 | - | 1494 | WP_000249348.1 | hypothetical protein | VF |
| RG54_RS10655 () | 2014154..2016214 | - | 2061 | WP_000498824.1 | hypothetical protein | VF |
| RG54_RS10660 () | 2016244..2017203 | - | 960 | WP_000135067.1 | hypothetical protein | VF |
| RG54_RS10665 () | 2017221..2017631 | - | 411 | WP_001324279.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| RG54_RS10670 () | 2017697..2018506 | - | 810 | WP_001365924.1 | hypothetical protein | VF |
| RG54_RS10675 () | 2018636..2023201 | - | 4566 | WP_001034505.1 | hypothetical protein | VF |
| RG54_RS10690 () | 2023686..2025368 | - | 1683 | WP_053264768.1 | glycolate permease GlcA | - |
| RG54_RS10695 () | 2025724..2027895 | - | 2172 | WP_000084053.1 | malate synthase G | - |
| RG54_RS10700 () | 2027917..2028321 | - | 405 | WP_000853256.1 | protein GlcG | - |
| RG54_RS10705 () | 2028326..2029549 | - | 1224 | WP_001194682.1 | glycolate oxidase subunit GlcF | - |
| RG54_RS10710 () | 2029560..2030612 | - | 1053 | WP_000943059.1 | glycolate oxidase subunit GlcE | - |
| RG54_RS10715 () | 2030612..2032111 | - | 1500 | WP_000026117.1 | glycolate oxidase subunit GlcD | - |
| RG54_RS10720 () | 2032362..2033126 | + | 765 | WP_001297764.1 | transcriptional regulator GlcC | - |
| RG54_RS10725 () | 2033133..2034275 | - | 1143 | WP_000388786.1 | DNA-binding protein | - |
| RG54_RS10735 () | 2034646..2036367 | + | 1722 | WP_001355868.1 | 2-succinylbenzoate--CoA ligase | VF |
| RG54_RS10740 () | 2036364..2037278 | + | 915 | WP_001077143.1 | NAD-dependent epimerase/dehydratase family protein | - |
| RG54_RS10745 () | 2037310..2037558 | + | 249 | WP_000248097.1 | acyl carrier protein | - |
| RG54_RS10750 () | 2037558..2038730 | + | 1173 | WP_000524972.1 | 8-amino-7-oxononanoate synthase | VF |
| RG54_RS10755 () | 2038766..2039845 | - | 1080 | WP_001300858.1 | LPS export ABC transporter permease LptG | - |
| RG54_RS10760 () | 2039842..2040912 | - | 1071 | WP_000779661.1 | LPS export ABC transporter permease LptF | - |
| RG54_RS10765 () | 2040943..2041503 | - | 561 | WP_001299422.1 | YtfJ family protein | - |
| RG54_RS10770 () | 2041515..2042339 | - | 825 | WP_000984976.1 | hypothetical protein | - |
| RG54_RS10775 () | 2042339..2043688 | - | 1350 | WP_000896880.1 | lipopolysaccharide biosynthesis protein | - |
| RG54_RS10780 () | 2043734..2044492 | - | 759 | WP_000339512.1 | hypothetical protein | - |
| RG54_RS10785 () | 2044524..2045237 | - | 714 | WP_001076233.1 | thymidylate kinase | - |
| RG54_RS10790 () | 2045411..2046103 | + | 693 | WP_001190783.1 | thymidylate kinase | - |
| RG54_RS10795 () | 2046152..2047651 | - | 1500 | WP_000933296.1 | inorganic phosphate transporter PitB | - |
| RG54_RS10800 () | 2047943..2049802 | - | 1860 | WP_001345957.1 | bifunctional glutathionylspermidine amidase/synthase | - |
| RG54_RS10805 () | 2050007..2050873 | + | 867 | WP_001298746.1 | glutathione-dependent disulfide-bond oxidoreductase | - |
| RG54_RS10810 () | 2050996..2051244 | - | 249 | WP_000334896.1 | hydrogenase maturation factor HybG | - |
| RG54_RS10815 () | 2051257..2051598 | - | 342 | WP_000544952.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| RG54_RS10820 () | 2051591..2052079 | - | 489 | WP_000134014.1 | hydrogenase-2 assembly chaperone | - |
| RG54_RS10825 () | 2052072..2052566 | - | 495 | WP_001221953.1 | HyaD/HybD family hydrogenase maturation endopeptidase | - |
| RG54_RS10830 () | 2052566..2054269 | - | 1704 | WP_000083065.1 | hydrogenase 2 large subunit | - |
| RG54_RS10835 () | 2054266..2055444 | - | 1179 | WP_000017694.1 | Ni/Fe-hydrogenase cytochrome b subunit | - |
| RG54_RS10840 () | 2055434..2056420 | - | 987 | WP_001081876.1 | hydrogenase 2 operon protein HybA | - |
| RG54_RS10845 () | 2056423..2057541 | - | 1119 | WP_000145410.1 | hydrogenase 2 small subunit | - |
| RG54_RS10855 () | 2057730..2058017 | - | 288 | WP_001059136.1 | DUF2623 domain-containing protein | - |
| RG54_RS10860 () | 2058136..2059023 | - | 888 | WP_001137768.1 | dienelactone hydrolase family protein | - |
| RG54_RS10865 () | 2059180..2060220 | + | 1041 | WP_000262154.1 | L-glyceraldehyde 3-phosphate reductase | - |
| RG54_RS10870 () | 2060260..2060754 | - | 495 | WP_000439331.1 | TIGR00645 family protein | - |
| RG54_RS10875 () | 2060945..2061829 | + | 885 | WP_000018760.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| RG54_RS10880 () | 2061868..2062293 | - | 426 | WP_001240712.1 | TonB system transport protein ExbD | - |
| RG54_RS10885 () | 2062300..2063034 | - | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| RG54_RS10895 () | 2063286..2064473 | + | 1188 | WP_000763931.1 | cystathionine beta-lyase | - |
| RG54_RS10900 () | 2064613..2065272 | + | 660 | WP_000268419.1 | DedA family protein | - |
| RG54_RS10905 () | 2065312..2066211 | - | 900 | WP_000817717.1 | DNA-binding transcriptional regulator YqhC | - |
| RG54_RS10915 () | 2066405..2067568 | + | 1164 | WP_001058807.1 | alcohol dehydrogenase | - |
| RG54_RS10920 () | 2067673..2068500 | + | 828 | WP_000013149.1 | 2,5-didehydrogluconate reductase DkgA | - |
| RG54_RS10925 () | 2068700..2069626 | + | 927 | WP_000691598.1 | YbjP/YqhG family protein | - |
| RG54_RS10930 () | 2069677..2069934 | + | 258 | WP_000848528.1 | lipoprotein YqhH | - |
| RG54_RS10935 () | 2069977..2072196 | - | 2220 | WP_000095187.1 | YgiQ family radical SAM protein | - |
| RG54_RS10940 () | 2072307..2073719 | - | 1413 | WP_000059395.1 | cell division protein FtsP | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|