MGE detailed information
MGE type: Prophage MGE length: 49098 bp
Accession: NZ_CP010180 Location: 175715..224812 Organism: Escherichia coli strain M1 Replicon: chromosome
Accession: NZ_CP010180 Location: 175715..224812 Organism: Escherichia coli strain M1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG54_RS28490 () | 171704..171751 | + | 48 | WP_211180494.1 | protein YnaN | - |
| RG54_RS00915 () | 171765..172748 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| RG54_RS00925 () | 173226..174599 | + | 1374 | WP_000123739.1 | ATP-dependent RNA helicase DbpA | - |
| RG54_RS00930 () | 174728..175663 | - | 936 | WP_053264959.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| RG54_RS00935 () | 175715..176950 | - | 1236 | WP_000040852.1 | Pesticin receptor ; Integrase | Integrase |
| RG54_RS00940 () | 176952..177167 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| RG54_RS00945 () | 177246..177443 | - | 198 | WP_024170988.1 | DUF1187 family protein | - |
| - () | 177271..177437 | + | 167 | NuclAT_1 | - | Antitoxin Detail |
| - () | 177271..177437 | + | 167 | NuclAT_1 | - | Antitoxin Detail |
| - () | 177271..177437 | + | 167 | NuclAT_1 | - | Antitoxin Detail |
| - () | 177271..177437 | + | 167 | NuclAT_1 | - | Antitoxin Detail |
| RG54_RS00950 () | 177436..177630 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| RG54_RS00955 () | 177687..178496 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| RG54_RS00960 () | 178489..181089 | - | 2601 | WP_000105136.1 | exodeoxyribonuclease VIII | - |
| RG54_RS00965 () | 181191..181466 | - | 276 | WP_024251429.1 | hypothetical protein | - |
| RG54_RS00970 () | 181541..181711 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| RG54_RS00975 () | 181711..181932 | - | 222 | WP_000560224.1 | killing protein KilR | - |
| RG54_RS00985 () | 182374..182862 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| RG54_RS00990 () | 182859..183014 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| RG54_RS00995 () | 183025..183204 | - | 180 | WP_001326317.1 | hypothetical protein | - |
| RG54_RS01005 () | 183447..183866 | - | 420 | WP_000233319.1 | helix-turn-helix domain-containing protein | - |
| RG54_RS01010 () | 183946..184200 | + | 255 | WP_001072342.1 | hypothetical protein | - |
| RG54_RS01015 () | 184197..184619 | + | 423 | WP_000693803.1 | hypothetical protein | - |
| RG54_RS01020 () | 184697..185484 | + | 788 | Protein_185 | hypothetical protein | - |
| RG54_RS01025 () | 185491..186237 | + | 747 | WP_000788769.1 | ATP-binding protein | - |
| RG54_RS01030 () | 186260..187021 | + | 762 | WP_000450658.1 | DUF1627 domain-containing protein | - |
| RG54_RS01035 () | 187037..187468 | + | 432 | WP_001141107.1 | DUF977 family protein | - |
| RG54_RS01045 () | 187662..188816 | + | 1155 | WP_000385105.1 | ATP-binding protein | - |
| RG54_RS01050 () | 188791..191055 | + | 2265 | WP_000091105.1 | S8 family peptidase | - |
| RG54_RS01055 () | 191472..192071 | + | 600 | WP_000940319.1 | DUF1367 family protein | - |
| RG54_RS01060 () | 192071..192361 | + | 291 | WP_000247763.1 | DUF1364 domain-containing protein | - |
| RG54_RS01065 () | 192358..192900 | + | 543 | WP_000640161.1 | DUF1133 family protein | - |
| RG54_RS01070 () | 193945..194373 | + | 429 | WP_000506936.1 | cell envelope integrity protein TolA | - |
| RG54_RS01075 () | 194545..194919 | + | 375 | WP_001348108.1 | hypothetical protein | - |
| RG54_RS01080 () | 195171..195386 | + | 216 | WP_000839565.1 | phage lysis protein EssD | - |
| RG54_RS01085 () | 195386..195883 | + | 498 | WP_001135310.1 | lysozyme RrrD | - |
| RG54_RS27195 () | 196100..196285 | + | 186 | WP_001228688.1 | prophage lysis lipoprotein RzoD | - |
| RG54_RS01095 () | 196482..197939 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| RG54_RS01105 () | 198077..198868 | + | 792 | WP_001291094.1 | ParB/Srx family N-terminal domain-containing protein | - |
| RG54_RS01110 () | 198861..199793 | + | 933 | WP_001204037.1 | hypothetical protein | - |
| RG54_RS01115 () | 199729..199980 | + | 252 | WP_000613571.1 | hypothetical protein | - |
| RG54_RS01120 () | 199984..201078 | + | 1095 | WP_000089447.1 | terminase small subunit | - |
| RG54_RS01125 () | 201059..202360 | + | 1302 | WP_000625348.1 | terminase family protein | - |
| RG54_RS01130 () | 202363..203769 | + | 1407 | WP_000763703.1 | DUF4055 domain-containing protein | - |
| RG54_RS01135 () | 203753..204865 | + | 1113 | WP_001351715.1 | hypothetical protein | - |
| RG54_RS01140 () | 204970..205734 | + | 765 | WP_000770044.1 | hypothetical protein | - |
| RG54_RS01145 () | 205833..206972 | + | 1140 | WP_000918482.1 | hypothetical protein | - |
| RG54_RS28295 () | 207015..207191 | + | 177 | WP_000908084.1 | hypothetical protein | - |
| RG54_RS01150 () | 207195..207590 | + | 396 | WP_000634214.1 | hypothetical protein | - |
| RG54_RS01155 () | 207590..207973 | + | 384 | WP_000524260.1 | hypothetical protein | - |
| RG54_RS01160 () | 207974..208354 | + | 381 | WP_001029815.1 | hypothetical protein | - |
| RG54_RS01165 () | 208351..208743 | + | 393 | WP_000673076.1 | hypothetical protein | - |
| RG54_RS01170 () | 208770..209732 | + | 963 | WP_000094292.1 | hypothetical protein | - |
| RG54_RS01175 () | 209883..210242 | + | 360 | WP_149002945.1 | hypothetical protein | - |
| RG54_RS01180 () | 210714..213947 | + | 3234 | WP_000840622.1 | phage tail tape measure protein | - |
| RG54_RS01185 () | 213940..214278 | + | 339 | WP_000024051.1 | phage tail protein | - |
| RG54_RS01190 () | 214278..214976 | + | 699 | WP_001152432.1 | phage minor tail protein L | - |
| RG54_RS01195 () | 214982..215725 | + | 744 | WP_001396591.1 | C40 family peptidase | - |
| RG54_RS01200 () | 215623..216270 | + | 648 | WP_000741591.1 | tail assembly protein | - |
| RG54_RS01205 () | 216331..219744 | + | 3414 | WP_053264956.1 | host specificity protein J | - |
| RG54_RS01210 () | 219814..220413 | + | 600 | WP_001230290.1 | putative HTH-type transcriptional regulator YybR | VF |
| RG54_RS01215 () | 220478..223549 | + | 3072 | WP_024251431.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RG54_RS01220 () | 223549..224124 | + | 576 | WP_001351719.1 | tail fiber assembly protein | - |
| RG54_RS01225 () | 224222..224812 | - | 591 | WP_000078178.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| RG54_RS01230 () | 225129..225362 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| RG54_RS27705 () | 225431..225544 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| RG54_RS01235 () | 226321..226755 | - | 435 | WP_001082294.1 | universal stress protein UspF | - |
| RG54_RS01240 () | 226896..228029 | - | 1134 | WP_046201463.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|