MGE detailed information
MGE type: Mobilizable plasmid MGE length: 116417 bp
Accession: NZ_CP010179 Location: 1..116417 Organism: Escherichia coli strain H15 Replicon: plasmid A
Accession: NZ_CP010179 Location: 1..116417 Organism: Escherichia coli strain H15 Replicon: plasmid A
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG53_RS24345 () | 1477..1962 | + | 486 | WP_016236481.1 | hypothetical protein | - |
| RG53_RS24350 () | 2075..2680 | + | 606 | WP_001567986.1 | hypothetical protein | - |
| RG53_RS24355 () | 2691..4157 | + | 1467 | Protein_3 | hypothetical protein | Relaxase |
| RG53_RS24360 () | 4454..5434 | + | 981 | WP_000019450.1 | IS5 family transposase ISKpn26 | Transposase |
| RG53_RS24370 () | 5583..6489 | - | 907 | Protein_5 | IS30 family transposase IS30D | Transposase |
| RG53_RS24380 () | 6557..6814 | - | 258 | Protein_6 | IS3 family transposase ISEc52 | Transposase |
| RG53_RS24385 () | 6883..7437 | - | 555 | Protein_7 | recombination-associated protein RdgC | - |
| RG53_RS24390 () | 7430..7714 | - | 285 | WP_001567974.1 | hypothetical protein | - |
| RG53_RS24405 () | 8176..8964 | + | 789 | WP_001567973.1 | hypothetical protein | - |
| RG53_RS24410 () | 9004..9426 | + | 423 | WP_001514466.1 | hypothetical protein | - |
| RG53_RS24415 () | 9604..9996 | + | 393 | WP_001281116.1 | hypothetical protein | - |
| RG53_RS24420 () | 10314..11174 | + | 861 | WP_001076427.1 | replication protein RepA | - |
| RG53_RS24425 () | 11574..12779 | + | 1206 | WP_000817632.1 | Plasmid partition protein A | VF |
| RG53_RS24430 () | 12776..13741 | + | 966 | WP_000725192.1 | ParB/RepB/Spo0J family partition protein | - |
| RG53_RS24435 () | 14006..15199 | + | 1194 | Protein_15 | hypothetical protein | - |
| RG53_RS24440 () | 15214..15911 | - | 698 | Protein_16 | IS1 family transposase IS1S | Transposase |
| RG53_RS24460 () | 16096..16425 | + | 330 | WP_000887652.1 | holin | - |
| RG53_RS24465 () | 16422..16865 | + | 444 | WP_000580776.1 | hypothetical protein | - |
| RG53_RS24470 () | 16852..17454 | + | 603 | WP_000164724.1 | hypothetical protein | - |
| RG53_RS24475 () | 17456..18478 | + | 1023 | Protein_20 | internal head protein | - |
| RG53_RS24480 () | 18475..19872 | + | 1398 | Protein_21 | helicase | - |
| RG53_RS24485 () | 19906..20346 | + | 441 | WP_000224043.1 | hypothetical protein | - |
| RG53_RS24490 () | 20343..20591 | + | 249 | WP_000747846.1 | hypothetical protein | - |
| RG53_RS25560 () | 20685..21382 | + | 698 | Protein_24 | IS1 family transposase IS1R | Transposase |
| RG53_RS24515 () | 21397..21711 | + | 315 | Protein_25 | sigma-70 family RNA polymerase sigma factor | - |
| RG53_RS24520 () | 21763..22569 | - | 807 | WP_001061054.1 | bacteriocin family protein | - |
| RG53_RS24525 () | 22571..23626 | - | 1056 | WP_001567967.1 | Dyp-type peroxidase | - |
| RG53_RS24530 () | 23720..24553 | - | 834 | WP_096960031.1 | NAD-dependent formate dehydrogenase | - |
| RG53_RS24550 () | 24636..25333 | + | 698 | Protein_29 | IS1 family transposase IS1S | Transposase |
| RG53_RS24555 () | 25345..25728 | + | 384 | Protein_30 | Methionine-binding lipoprotein MetQ | VF |
| RG53_RS24560 () | 25823..28888 | - | 3066 | WP_000002334.1 | tetrathionate reductase subunit TtrA | - |
| RG53_RS24565 () | 28881..29903 | - | 1023 | WP_001016644.1 | tetrathionate reductase subunit TtrC | - |
| RG53_RS24570 () | 29904..30656 | - | 753 | WP_077910396.1 | tetrathionate reductase subunit TtrB | - |
| RG53_RS24575 () | 30866..32599 | + | 1734 | WP_149026289.1 | Tetrathionate sensor histidine kinase TtrS | VF |
| RG53_RS24580 () | 32574..33158 | + | 585 | WP_000974596.1 | Tetrathionate response regulatory protein TtrR | VF |
| RG53_RS24585 () | 33251..33454 | + | 204 | WP_000528119.1 | fumarate hydratase FumD | - |
| RG53_RS24590 () | 33563..34543 | - | 981 | WP_073527981.1 | IS5 family transposase IS5D | Transposase |
| RG53_RS24595 () | 34584..34961 | - | 378 | WP_016236473.1 | hypothetical protein | - |
| RG53_RS24600 () | 34995..35210 | - | 216 | WP_001568011.1 | hypothetical protein | - |
| RG53_RS24605 () | 35399..35638 | - | 240 | WP_001567352.1 | recombination enhancement function protein | - |
| RG53_RS26025 () | 35857..35931 | + | 75 | Protein_41 | IS5 family transposase ISKpn26 | Transposase |
| RG53_RS26030 () | 35904..36215 | - | 312 | Protein_42 | transposase | - |
| RG53_RS24625 () | 36559..36873 | + | 315 | Protein_43 | IS110 family transposase ISEc21 | Transposase |
| RG53_RS24630 () | 36890..37198 | + | 309 | Protein_44 | IS3 family transposase ISLad1 | Transposase |
| RG53_RS24635 () | 37628..39181 | - | 1554 | WP_000545263.1 | L-lactate permease | - |
| RG53_RS24640 () | 39617..41314 | + | 1698 | WP_001567355.1 | D-lactate dehydrogenase | - |
| RG53_RS24645 () | 41389..42108 | + | 720 | WP_001102107.1 | (Fe-S)-binding protein | - |
| RG53_RS24650 () | 42119..43546 | + | 1428 | WP_000023895.1 | iron-sulfur cluster-binding protein | - |
| RG53_RS24655 () | 43539..44234 | + | 696 | WP_000370412.1 | lactate utilization protein C | - |
| RG53_RS24660 () | 44284..44664 | - | 381 | Protein_50 | gluconate permease | - |
| RG53_RS24665 () | 44875..45186 | + | 312 | WP_000558568.1 | type II toxin-antitoxin system HigB family toxin | Toxin Detail |
| RG53_RS24670 () | 45183..45602 | + | 420 | WP_000990392.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| RG53_RS24675 () | 45639..46841 | - | 1203 | WP_000753105.1 | hypothetical protein | - |
| RG53_RS24680 () | 46834..47163 | - | 330 | WP_000121260.1 | hypothetical protein | - |
| RG53_RS24685 () | 47160..47819 | - | 660 | WP_000078540.1 | hypothetical protein | - |
| RG53_RS24695 () | 48243..48836 | - | 594 | WP_042111017.1 | hypothetical protein | - |
| RG53_RS24700 () | 49152..49505 | + | 354 | WP_001114073.1 | As(III)-sensing metalloregulatory transcriptional repressor ArsR | - |
| RG53_RS24705 () | 49553..49915 | + | 363 | WP_000783215.1 | arsenite efflux transporter metallochaperone ArsD | - |
| RG53_RS24710 () | 49933..51684 | + | 1752 | WP_001556710.1 | arsenite efflux transporter ATPase subunit ArsA | - |
| RG53_RS24715 () | 51733..53022 | + | 1290 | WP_016236471.1 | arsenite efflux transporter membrane subunit ArsB | - |
| RG53_RS24720 () | 53035..53460 | + | 426 | WP_000065758.1 | glutaredoxin-dependent arsenate reductase | - |
| RG53_RS24725 () | 53491..53895 | - | 405 | WP_001567357.1 | arsenic transporter ATPase | - |
| RG53_RS24730 () | 53904..54158 | - | 255 | Protein_63 | helix-turn-helix domain-containing protein | - |
| RG53_RS24735 () | 54222..54503 | + | 282 | Protein_64 | IS6 family transposase IS15DII | Transposase |
| RG53_RS24740 () | 54503..54688 | - | 186 | Protein_65 | Tn3 family transposase | - |
| RG53_RS24745 () | 54945..56222 | - | 1278 | WP_000625672.1 | DUF2254 domain-containing protein | - |
| RG53_RS24750 () | 56286..58283 | - | 1998 | WP_008325030.1 | choline BCCT transporter BetT | - |
| RG53_RS26035 () | 58469..58627 | - | 159 | Protein_68 | IS5 family transposase ISKpn26 | Transposase |
| RG53_RS24760 () | 58767..59543 | - | 777 | WP_023205625.1 | MBL fold metallo-hydrolase | - |
| RG53_RS24765 () | 59614..60567 | - | 954 | WP_021553339.1 | HTH-type transcriptional regulator CdhR | VF |
| RG53_RS24770 () | 60587..60985 | - | 399 | WP_021553338.1 | ester cyclase | - |
| RG53_RS24780 () | 61220..61693 | + | 474 | Protein_72 | IS6 family transposase IS26 | Transposase |
| RG53_RS24785 () | 61735..63270 | - | 1536 | WP_073527983.1 | IS66 family transposase ISSgsp1 | Transposase |
| RG53_RS24790 () | 63320..63667 | - | 348 | WP_000609174.1 | IS66 family transposase ISCfr14 | Transposase |
| RG53_RS24795 () | 63664..64047 | - | 384 | WP_001201739.1 | IS66 family insertion sequence hypothetical protein | - |
| RG53_RS24800 () | 64112..64369 | + | 258 | Protein_76 | IS6 family transposase IS26 | Transposase |
| RG53_RS26040 () | 64423..64599 | + | 177 | Protein_77 | IS3 family transposase | - |
| RG53_RS24810 () | 64605..66029 | - | 1425 | WP_021553337.1 | hypothetical protein | - |
| RG53_RS24815 () | 66026..68965 | - | 2940 | WP_073527984.1 | AAA family ATPase | - |
| RG53_RS24820 () | 69006..69263 | - | 258 | WP_021553335.1 | DNA polymerase III subunit theta | - |
| RG53_RS24825 () | 69263..69550 | - | 288 | WP_021553334.1 | hypothetical protein | - |
| RG53_RS24830 () | 69827..70305 | - | 479 | Protein_82 | IS5 family transposase | - |
| RG53_RS24835 () | 70359..71063 | + | 705 | WP_009364894.1 | IS6 family transposase IS26 | Transposase |
| RG53_RS24845 () | 71115..71351 | - | 237 | Protein_84 | transposase | - |
| RG53_RS24855 () | 71511..71774 | + | 264 | WP_001295708.1 | IS66 family transposase ISPpu19 | Transposase |
| RG53_RS24860 () | 71968..72249 | + | 282 | WP_004118812.1 | helix-turn-helix domain-containing protein | - |
| RG53_RS24865 () | 72284..72853 | + | 570 | WP_004152117.1 | Spore protein SP21 | VF |
| RG53_RS24870 () | 72959..75808 | + | 2850 | WP_000101613.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VF |
| RG53_RS24875 () | 75808..75999 | + | 192 | WP_001295707.1 | hypothetical protein | - |
| RG53_RS24880 () | 76060..76795 | + | 736 | Protein_90 | ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein | - |
| RG53_RS26045 () | 76746..76886 | + | 141 | WP_023205099.1 | ATP-dependent metalloprotease FtsH | - |
| RG53_RS24885 () | 76974..77432 | + | 459 | WP_001275372.1 | Spore protein SP21 | VF |
| RG53_RS24890 () | 77455..78369 | + | 915 | WP_023352866.1 | heat resistance protein YfdX1 | - |
| RG53_RS24895 () | 78472..79359 | + | 888 | WP_001721696.1 | heat resistance protein YfdX2 | - |
| RG53_RS24900 () | 79456..80067 | + | 612 | WP_001090783.1 | heat resistance membrane protein HdeD-GI | - |
| RG53_RS24905 () | 80147..81292 | + | 1146 | WP_073527985.1 | hypothetical protein | - |
| RG53_RS24910 () | 81282..81722 | + | 441 | WP_000786816.1 | heat resistance system thioredoxin Trx-GI | - |
| RG53_RS24915 () | 81726..83441 | + | 1716 | WP_001295706.1 | heat resistance system K+/H+ antiporter KefB-GI | - |
| RG53_RS24920 () | 83438..83935 | + | 498 | WP_000843382.1 | heat resistance protein PsiE-GI | - |
| RG53_RS24925 () | 83913..84878 | + | 966 | WP_001721693.1 | M48 family metalloprotease | - |
| RG53_RS24930 () | 84903..86054 | + | 1152 | WP_016156528.1 | Putative serine protease HhoB | VF |
| RG53_RS24935 () | 86279..86668 | - | 390 | Protein_102 | IS5 family transposase ISThi1 | Transposase |
| RG53_RS24940 () | 86899..87894 | + | 996 | WP_001515743.1 | IS110 family transposase IS1663 | Transposase |
| RG53_RS24945 () | 88193..89431 | + | 1239 | WP_000219087.1 | IS110 family transposase ISCps4 | Transposase |
| RG53_RS24955 () | 89907..90479 | + | 573 | WP_001515348.1 | cytochrome b/b6 domain-containing protein | - |
| RG53_RS24960 () | 90679..91602 | + | 924 | WP_000167917.1 | cation diffusion facilitator family transporter | - |
| RG53_RS24970 () | 91709..92413 | - | 705 | WP_009364894.1 | IS6 family transposase IS26 | Transposase |
| RG53_RS24975 () | 92476..94167 | + | 1692 | Protein_108 | Tn3 family transposase ISEc63 | Transposase |
| RG53_RS24980 () | 94201..94629 | - | 429 | Protein_109 | recombinase | - |
| RG53_RS24985 () | 94877..95188 | - | 312 | WP_023351936.1 | hypothetical protein | - |
| RG53_RS24990 () | 95239..96270 | - | 1032 | WP_054623395.1 | site-specific integrase | - |
| RG53_RS24995 () | 96278..96499 | - | 222 | WP_054623396.1 | hypothetical protein | - |
| RG53_RS25010 () | 97136..98116 | - | 981 | WP_000019450.1 | IS5 family transposase ISKpn26 | Transposase |
| RG53_RS25025 () | 98304..98513 | + | 210 | WP_000874156.1 | hypothetical protein | - |
| RG53_RS25030 () | 98624..99475 | + | 852 | WP_000611664.1 | hypothetical protein | - |
| RG53_RS25035 () | 99508..100622 | - | 1115 | Protein_116 | phage antirepressor KilAC domain-containing protein | - |
| RG53_RS26050 () | 100619..100978 | - | 360 | Protein_117 | host cell division inhibitor Icd-like protein | - |
| RG53_RS25050 () | 101200..102327 | - | 1128 | WP_001446093.1 | hypothetical protein | - |
| RG53_RS25065 () | 102391..103619 | + | 1229 | WP_102384962.1 | IS3 family transposase IS2 | Transposase |
| RG53_RS25070 () | 103631..104020 | - | 390 | Protein_120 | terminase | - |
| RG53_RS25075 () | 104020..104337 | - | 318 | WP_001568004.1 | hypothetical protein | - |
| RG53_RS25085 () | 104740..105783 | - | 1044 | WP_000648817.1 | DUF968 domain-containing protein | - |
| RG53_RS25090 () | 105811..105990 | - | 180 | WP_001446091.1 | hypothetical protein | - |
| RG53_RS25095 () | 105995..106375 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| RG53_RS25100 () | 106375..106596 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| RG53_RS25105 () | 106779..108335 | + | 1557 | WP_001568002.1 | type I restriction-modification system subunit M | - |
| RG53_RS25110 () | 108332..108958 | + | 627 | WP_001568001.1 | restriction endonuclease subunit S | - |
| RG53_RS25115 () | 109080..112196 | + | 3117 | WP_001568000.1 | HsdR family type I site-specific deoxyribonuclease | - |
| RG53_RS25120 () | 112461..112967 | - | 507 | WP_000021755.1 | hypothetical protein | - |
| RG53_RS25130 () | 113477..114178 | - | 702 | WP_001567999.1 | hypothetical protein | - |
| RG53_RS25135 () | 114175..114852 | - | 678 | WP_001567998.1 | metallophosphoesterase | - |
| RG53_RS25140 () | 114849..115475 | - | 627 | WP_000484116.1 | norphogenetic protein | - |
| RG53_RS25150 () | 115977..116132 | - | 156 | WP_001567997.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|