MGE detailed information
MGE type: Genomic_island MGE length: 14382 bp
Accession: NZ_CP010170 Location: 2543190..2557571 Organism: Escherichia coli strain H6 Replicon: chromosome
Accession: NZ_CP010170 Location: 2543190..2557571 Organism: Escherichia coli strain H6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG48_RS13300 () | 2543190..2543456 | + | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| RG48_RS13305 () | 2543456..2544778 | + | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| RG48_RS13315 () | 2545090..2545298 | + | 209 | Protein_2423 | helix-turn-helix transcriptional regulator | - |
| RG48_RS13320 () | 2545731..2546294 | + | 564 | WP_001296758.1 | Type-1 fimbrial protein, A chain | VF |
| RG48_RS13325 () | 2546655..2547365 | + | 711 | WP_073464595.1 | Chaperone protein FocC | VF |
| RG48_RS13330 () | 2547443..2548351 | + | 909 | WP_149025512.1 | Outer membrane usher protein FimD | VF |
| RG48_RS13335 () | 2548365..2548895 | + | 531 | WP_000876763.1 | Protein FimF | VF |
| RG48_RS13340 () | 2548908..2549411 | + | 504 | WP_000825452.1 | Protein FimG | VF |
| RG48_RS13345 () | 2549470..2550384 | + | 915 | WP_000520664.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| RG48_RS13350 () | 2550718..2552997 | + | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| RG48_RS13355 () | 2553245..2553442 | + | 198 | WP_000543385.1 | two-component system connector SafA | - |
| RG48_RS13360 () | 2553517..2554278 | + | 762 | WP_073464598.1 | acid stress response transcriptional regulator YdeO | - |
| RG48_RS13365 () | 2554680..2556362 | + | 1683 | WP_001295684.1 | sulfatase | - |
| RG48_RS13370 () | 2556414..2557571 | + | 1158 | WP_001295683.1 | anaerobic sulfatase maturase | - |
| RG48_RS25815 () | 2557537..2557659 | - | 123 | WP_122985823.1 | hypothetical protein | - |
| RG48_RS13375 () | 2557862..2559547 | + | 1686 | WP_004015950.1 | ABC transporter ATP-binding protein/permease | - |
| RG48_RS13380 () | 2559585..2561957 | + | 2373 | WP_073464600.1 | TonB-dependent receptor plug domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.008 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.008 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.01 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.01 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.008 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.008 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.008 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.008 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.008 |