MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 115499 bp
Accession: NZ_CP010157 Location: 800638..916136 Organism: Escherichia coli strain D10 Replicon: chromosome
Accession: NZ_CP010157 Location: 800638..916136 Organism: Escherichia coli strain D10 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG43_RS04165 () | 795805..796731 | - | 927 | WP_000691608.1 | YbjP/YqhG family protein | - |
| RG43_RS04170 () | 796931..797758 | - | 828 | WP_000013152.1 | 2,5-didehydrogluconate reductase DkgA | - |
| RG43_RS04175 () | 797863..799026 | - | 1164 | WP_001058802.1 | alcohol dehydrogenase | - |
| RG43_RS04185 () | 799220..800119 | + | 900 | WP_001318045.1 | DNA-binding transcriptional regulator YqhC | - |
| RG43_RS04190 () | 800159..800818 | - | 660 | WP_000268419.1 | DedA family protein | - |
| RG43_RS04195 () | 800958..802145 | - | 1188 | WP_001318044.1 | cystathionine beta-lyase | - |
| RG43_RS04205 () | 802397..803131 | + | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| RG43_RS04210 () | 803138..803563 | + | 426 | WP_001240712.1 | TonB system transport protein ExbD | - |
| RG43_RS04215 () | 803602..804486 | - | 885 | WP_000018778.1 | NADP(+)-dependent aldehyde reductase | - |
| RG43_RS04220 () | 804677..805171 | + | 495 | WP_000439331.1 | TIGR00645 family protein | - |
| RG43_RS04225 () | 805211..806251 | - | 1041 | WP_000262143.1 | L-glyceraldehyde 3-phosphate reductase | - |
| RG43_RS04230 () | 806408..807295 | + | 888 | WP_001318043.1 | dienelactone hydrolase family protein | - |
| RG43_RS04235 () | 807414..807701 | + | 288 | WP_001059139.1 | DUF2623 domain-containing protein | - |
| RG43_RS04245 () | 807890..809008 | + | 1119 | WP_000145410.1 | hydrogenase 2 small subunit | - |
| RG43_RS04250 () | 809011..809997 | + | 987 | WP_001081868.1 | hydrogenase 2 operon protein HybA | - |
| RG43_RS04255 () | 809987..811165 | + | 1179 | WP_000017701.1 | Ni/Fe-hydrogenase cytochrome b subunit | - |
| RG43_RS04260 () | 811162..812865 | + | 1704 | WP_000083065.1 | hydrogenase 2 large subunit | - |
| RG43_RS04265 () | 812865..813359 | + | 495 | WP_001221939.1 | HyaD/HybD family hydrogenase maturation endopeptidase | - |
| RG43_RS04270 () | 813352..813840 | + | 489 | WP_000134017.1 | hydrogenase-2 assembly chaperone | - |
| RG43_RS04275 () | 813833..814174 | + | 342 | WP_000544952.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| RG43_RS04280 () | 814187..814435 | + | 249 | WP_000334896.1 | hydrogenase maturation factor HybG | - |
| RG43_RS04285 () | 814558..815424 | - | 867 | WP_001318042.1 | glutathione-dependent disulfide-bond oxidoreductase | - |
| RG43_RS04290 () | 815629..817488 | + | 1860 | WP_001309761.1 | bifunctional glutathionylspermidine amidase/synthase | - |
| RG43_RS04295 () | 817780..819279 | + | 1500 | WP_000933296.1 | inorganic phosphate transporter PitB | - |
| RG43_RS04300 () | 819328..820020 | - | 693 | WP_001190763.1 | thymidylate kinase | - |
| RG43_RS04305 () | 820194..820907 | + | 714 | WP_001076267.1 | thymidylate kinase | - |
| RG43_RS04310 () | 820939..821697 | + | 759 | WP_000339529.1 | hypothetical protein | - |
| RG43_RS04315 () | 821743..823092 | + | 1350 | WP_000896872.1 | lipopolysaccharide biosynthesis protein | - |
| RG43_RS04320 () | 823092..823916 | + | 825 | WP_000984989.1 | hypothetical protein | - |
| RG43_RS04325 () | 823928..824488 | + | 561 | WP_000098711.1 | YtfJ family protein | - |
| RG43_RS04330 () | 824518..825588 | + | 1071 | WP_000779645.1 | LPS export ABC transporter permease LptF | - |
| RG43_RS04335 () | 825585..826664 | + | 1080 | WP_001318039.1 | LPS export ABC transporter permease LptG | - |
| RG43_RS04340 () | 826699..827871 | - | 1173 | WP_000524954.1 | 8-amino-7-oxononanoate synthase | VF |
| RG43_RS04345 () | 827871..828119 | - | 249 | WP_000248097.1 | acyl carrier protein | - |
| RG43_RS04350 () | 828151..829065 | - | 915 | WP_001077189.1 | NAD-dependent epimerase/dehydratase family protein | - |
| RG43_RS04355 () | 829062..830786 | - | 1725 | WP_206746051.1 | hypothetical protein | VF |
| RG43_RS04360 () | 831157..832299 | + | 1143 | WP_001318038.1 | hypothetical protein | - |
| RG43_RS04365 () | 832306..833070 | - | 765 | WP_001314155.1 | transcriptional regulator GlcC | - |
| RG43_RS04370 () | 833321..834820 | + | 1500 | WP_001696208.1 | glycolate oxidase subunit GlcD | - |
| RG43_RS04375 () | 834820..835872 | + | 1053 | WP_039005238.1 | glycolate oxidase subunit GlcE | - |
| RG43_RS04380 () | 835883..837106 | + | 1224 | WP_001194810.1 | glycolate oxidase subunit GlcF | - |
| RG43_RS04385 () | 837111..837515 | + | 405 | WP_000853256.1 | protein GlcG | - |
| RG43_RS04390 () | 837537..839708 | + | 2172 | WP_000084114.1 | malate synthase G | - |
| RG43_RS04395 () | 840064..841746 | + | 1683 | WP_000259302.1 | glycolate permease GlcA | - |
| RG43_RS04405 () | 842231..846787 | + | 4557 | WP_001034482.1 | hypothetical protein | VF |
| RG43_RS04410 () | 846951..847760 | + | 810 | WP_001318036.1 | hypothetical protein | VF |
| RG43_RS04415 () | 847826..848236 | + | 411 | WP_001298257.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| RG43_RS04420 () | 848254..849213 | + | 960 | WP_001696202.1 | hypothetical protein | VF |
| RG43_RS04425 () | 849243..851303 | + | 2061 | WP_001318034.1 | hypothetical protein | VF |
| RG43_RS04430 () | 851303..852796 | + | 1494 | WP_000249319.1 | hypothetical protein | VF |
| RG43_RS04435 () | 852796..854019 | + | 1224 | WP_001173415.1 | hypothetical protein | VF |
| RG43_RS04440 () | 854036..854491 | + | 456 | WP_001087296.1 | hypothetical protein | VF |
| RG43_RS04445 () | 854495..855058 | + | 564 | WP_001115149.1 | hypothetical protein | VF |
| RG43_RS04450 () | 855055..855426 | + | 372 | WP_000820091.1 | hypothetical protein | VF |
| RG43_RS04455 () | 855423..856028 | + | 606 | WP_001318033.1 | hypothetical protein | VF |
| RG43_RS04460 () | 856025..857002 | + | 978 | WP_073506912.1 | hypothetical protein | VF |
| RG43_RS04465 () | 856999..858177 | + | 1179 | WP_000097200.1 | hypothetical protein | VF |
| RG43_RS04470 () | 858179..858715 | + | 537 | WP_000942807.1 | hypothetical protein | VF |
| RG43_RS04475 () | 858995..859837 | - | 843 | WP_039004748.1 | DUF4942 domain-containing protein | - |
| RG43_RS28815 () | 859922..860119 | - | 198 | WP_023563519.1 | DUF957 domain-containing protein | - |
| RG43_RS28820 () | 860195..860344 | - | 150 | Protein_812 | hypothetical protein | - |
| RG43_RS04485 () | 860341..860718 | - | 378 | WP_057109034.1 | TA system toxin CbtA family protein | Toxin Detail |
| RG43_RS04490 () | 860808..861176 | - | 369 | WP_001285610.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| RG43_RS04495 () | 861250..861471 | - | 222 | Protein_815 | DUF987 domain-containing protein | - |
| RG43_RS04500 () | 861558..862034 | - | 477 | WP_057109035.1 | RadC family protein | - |
| RG43_RS04505 () | 862050..862529 | - | 480 | WP_057109036.1 | antirestriction protein | - |
| RG43_RS29410 () | 862629..862769 | + | 141 | WP_000997937.1 | hypothetical protein | - |
| RG43_RS04515 () | 862795..863613 | - | 819 | WP_001175153.1 | DUF945 domain-containing protein | - |
| RG43_RS04520 () | 863703..863936 | - | 234 | WP_073506913.1 | DUF905 family protein | - |
| RG43_RS04525 () | 863942..864619 | - | 678 | WP_073506914.1 | hypothetical protein | - |
| RG43_RS04530 () | 864738..865622 | - | 885 | WP_000010392.1 | 50S ribosome-binding GTPase | - |
| RG43_RS04535 () | 865807..866937 | + | 1131 | WP_000147743.1 | hypothetical protein | - |
| RG43_RS29415 () | 868128..868301 | - | 174 | WP_154675835.1 | hypothetical protein | - |
| RG43_RS04545 () | 868481..869212 | + | 732 | WP_001075462.1 | inovirus Gp2 family protein | - |
| RG43_RS04560 () | 869722..870174 | + | 453 | WP_001100705.1 | hypothetical protein | VF |
| RG43_RS04580 () | 872038..874086 | + | 2049 | WP_000792543.1 | TonB-dependent siderophore receptor IreA | - |
| RG43_RS04585 () | 874266..875430 | - | 1165 | Protein_829 | IS256 family transposase ISSod4 | Transposase |
| RG43_RS28105 () | 875468..876681 | + | 1214 | Protein_830 | IS3 family transposase | - |
| RG43_RS04605 () | 877817..878383 | + | 567 | WP_001126822.1 | inovirus-type Gp2 protein | - |
| RG43_RS04610 () | 878641..879213 | + | 573 | WP_000991576.1 | hypothetical protein | - |
| RG43_RS04615 () | 879282..879518 | + | 237 | WP_000958152.1 | AlpA family transcriptional regulator | - |
| RG43_RS04620 () | 879785..880333 | + | 549 | WP_001167473.1 | hypothetical protein | - |
| RG43_RS04625 () | 880352..880600 | - | 249 | WP_001349534.1 | osmoprotectant transport activator ProQ | - |
| RG43_RS04630 () | 880669..880860 | - | 192 | WP_001323513.1 | hypothetical protein | - |
| RG43_RS28110 () | 881263..881954 | - | 692 | Protein_837 | IS1 family transposase | - |
| RG43_RS28825 () | 882014..882190 | + | 177 | Protein_838 | transketolase family protein | - |
| RG43_RS04650 () | 882453..882566 | + | 114 | WP_032346664.1 | transposase | - |
| RG43_RS04660 () | 883390..883956 | + | 567 | WP_000919994.1 | hypothetical protein | - |
| RG43_RS04670 () | 884197..885012 | + | 816 | WP_001043260.1 | hypothetical protein | ARG |
| RG43_RS04675 () | 885099..885401 | + | 303 | WP_000251875.1 | phosphoglucosamine mutase | - |
| RG43_RS04685 () | 885577..886233 | - | 657 | Protein_843 | IS91-like element ISVsa3 family transposase | - |
| RG43_RS28835 () | 886167..886445 | - | 279 | WP_001349530.1 | hypothetical protein | VF |
| RG43_RS04705 () | 886868..887182 | + | 315 | WP_000930062.1 | hypothetical protein | VF |
| RG43_RS04710 () | 887389..887652 | + | 264 | Protein_846 | hypothetical protein | VF |
| RG43_RS04715 () | 887772..888980 | + | 1209 | WP_021112574.1 | IS4 family transposase IS10R | Transposase |
| RG43_RS04720 () | 888990..889361 | - | 372 | WP_035689358.1 | hypothetical protein | VF |
| RG43_RS04725 () | 889494..890087 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| RG43_RS04730 () | 890200..891405 | - | 1206 | WP_001089068.1 | hypothetical protein | ARG |
| RG43_RS04735 () | 891487..892110 | + | 624 | WP_000088605.1 | hypothetical protein | VF |
| RG43_RS04740 () | 892088..892774 | - | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| RG43_RS04745 () | 892782..893168 | - | 387 | WP_000460651.1 | hypothetical protein | - |
| RG43_RS04750 () | 893161..893481 | - | 321 | WP_000562370.1 | antibiotic biosynthesis monooxygenase | - |
| RG43_RS04755 () | 893925..895130 | + | 1206 | WP_000599533.1 | sodium/glutamate symporter | - |
| RG43_RS04760 () | 895361..895480 | + | 120 | Protein_856 | LysR family transcriptional regulator | - |
| RG43_RS04765 () | 895496..896704 | - | 1209 | WP_021112574.1 | IS4 family transposase IS10R | Transposase |
| RG43_RS04775 () | 896821..897093 | + | 273 | Protein_858 | fimbrial protein | - |
| RG43_RS04780 () | 897156..897742 | + | 587 | Protein_859 | type 1 fimbrial protein | - |
| RG43_RS04785 () | 897801..900311 | + | 2511 | WP_000654934.1 | hypothetical protein | VF |
| RG43_RS04790 () | 900343..901914 | - | 1572 | WP_073506915.1 | IS66 family transposase ISCro1 | Transposase |
| RG43_RS04795 () | 901934..902281 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| RG43_RS04800 () | 902281..902928 | - | 648 | WP_001774680.1 | IS66 family transposase ISCro1 | Transposase |
| RG43_RS04815 () | 904508..905242 | + | 735 | WP_000265730.1 | hypothetical protein | VF |
| RG43_RS04820 () | 905279..905860 | + | 582 | WP_000261303.1 | hypothetical protein | VF |
| RG43_RS04825 () | 905870..906406 | + | 537 | WP_000597712.1 | hypothetical protein | VF |
| RG43_RS04830 () | 906433..906954 | + | 522 | WP_000723802.1 | hypothetical protein | VF |
| RG43_RS04835 () | 907029..907529 | + | 501 | WP_000620429.1 | hypothetical protein | VF |
| RG43_RS04840 () | 907573..908583 | + | 1011 | WP_000758687.1 | hypothetical protein | VF |
| RG43_RS04850 () | 908943..909689 | + | 747 | WP_001350744.1 | porin family protein | - |
| RG43_RS28840 () | 909864..911363 | + | 1500 | WP_001026222.1 | phosphoethanolamine transferase | - |
| RG43_RS04860 () | 911472..914987 | - | 3516 | WP_073506916.1 | ATP-binding protein | - |
| RG43_RS04870 () | 915439..916701 | - | 1263 | WP_073506917.1 | integrase arm-type DNA-binding domain-containing protein | - |
| RG43_RS04880 () | 917080..917787 | - | 708 | WP_000234526.1 | DUF554 domain-containing protein | - |
| RG43_RS04890 () | 918179..920314 | + | 2136 | WP_001318032.1 | ornithine decarboxylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|