MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 114159 bp
Accession: NZ_CP010153 Location: 1..114159 Organism: Escherichia coli strain D9 Replicon: plasmid A
Accession: NZ_CP010153 Location: 1..114159 Organism: Escherichia coli strain D9 Replicon: plasmid A
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG42_RS26575 () | 1..822 | - | 822 | Protein_0 | tail fiber protein | - |
| RG42_RS26800 () | 959..1642 | + | 684 | WP_162733458.1 | hypothetical protein | - |
| RG42_RS24300 () | 2278..7005 | - | 4728 | WP_072652154.1 | DUF1983 domain-containing protein | - |
| RG42_RS24305 () | 7023..7616 | - | 594 | WP_001293195.1 | tail assembly protein | - |
| RG42_RS24310 () | 7604..8401 | - | 798 | WP_001405045.1 | C40 family peptidase | - |
| RG42_RS24315 () | 8394..9092 | - | 699 | WP_000511445.1 | phage minor tail protein L | - |
| RG42_RS24320 () | 9175..9510 | - | 336 | WP_000442113.1 | phage tail protein | - |
| RG42_RS24325 () | 9553..14130 | - | 4578 | WP_073503551.1 | tape measure protein | - |
| RG42_RS24330 () | 14138..14362 | - | 225 | WP_000952686.1 | hypothetical protein | - |
| RG42_RS24335 () | 14488..14805 | - | 318 | WP_000163860.1 | hypothetical protein | - |
| RG42_RS24340 () | 14867..15613 | - | 747 | WP_000072375.1 | Ig domain-containing protein | - |
| RG42_RS24345 () | 15688..16071 | - | 384 | WP_000469440.1 | minor capsid protein | - |
| RG42_RS24350 () | 16073..16546 | - | 474 | WP_000523628.1 | hypothetical protein | - |
| RG42_RS24355 () | 16537..16881 | - | 345 | WP_001027663.1 | hypothetical protein | - |
| RG42_RS24360 () | 16961..17794 | - | 834 | WP_000057117.1 | hypothetical protein | - |
| RG42_RS24365 () | 17794..18228 | - | 435 | WP_000801186.1 | hypothetical protein | - |
| RG42_RS24370 () | 18273..19193 | - | 921 | WP_021520523.1 | Ig domain-containing protein | - |
| RG42_RS24375 () | 19267..20142 | - | 876 | WP_001130339.1 | hypothetical protein | - |
| RG42_RS24380 () | 20168..21055 | - | 888 | WP_073503552.1 | hypothetical protein | - |
| RG42_RS24385 () | 21077..22651 | - | 1575 | WP_073503553.1 | phage portal protein | - |
| RG42_RS24390 () | 22678..23934 | - | 1257 | WP_001007299.1 | phage terminase large subunit | - |
| RG42_RS24395 () | 23934..24566 | - | 633 | WP_000215413.1 | hypothetical protein | - |
| RG42_RS24400 () | 24763..25029 | - | 267 | WP_000176292.1 | hypothetical protein | - |
| RG42_RS24405 () | 25039..25929 | - | 891 | WP_000129633.1 | hypothetical protein | - |
| RG42_RS24410 () | 25926..26591 | - | 666 | WP_001717191.1 | ATP-binding cassette domain-containing protein | - |
| RG42_RS24415 () | 26588..27256 | - | 669 | WP_000161986.1 | ParB/Srx family N-terminal domain-containing protein | - |
| RG42_RS24420 () | 27256..27936 | - | 681 | WP_000382660.1 | ParB N-terminal domain-containing protein | - |
| RG42_RS24425 () | 28019..29578 | + | 1560 | WP_039052494.1 | DEAD/DEAH box helicase | - |
| RG42_RS24430 () | 29581..29859 | + | 279 | WP_021520518.1 | hypothetical protein | - |
| RG42_RS24435 () | 30034..30633 | + | 600 | WP_024189780.1 | hypothetical protein | - |
| RG42_RS24440 () | 30630..31151 | + | 522 | WP_021520104.1 | hypothetical protein | - |
| RG42_RS24445 () | 31449..32099 | + | 651 | WP_021520516.1 | hypothetical protein | - |
| RG42_RS24450 () | 32147..32377 | + | 231 | WP_000470243.1 | hypothetical protein | - |
| RG42_RS24460 () | 32993..33475 | - | 483 | WP_001009193.1 | hypothetical protein | - |
| RG42_RS24465 () | 33826..34200 | - | 375 | WP_021512333.1 | hypothetical protein | - |
| RG42_RS24470 () | 34318..34713 | - | 396 | WP_073503554.1 | hypothetical protein | - |
| RG42_RS24475 () | 34840..35151 | - | 312 | WP_000749406.1 | hypothetical protein | - |
| RG42_RS24480 () | 35305..35634 | - | 330 | WP_016608024.1 | hypothetical protein | - |
| RG42_RS24490 () | 37210..37608 | - | 399 | WP_032252448.1 | hypothetical protein | - |
| RG42_RS24500 () | 37903..38145 | - | 243 | WP_032252493.1 | DUF1380 family protein | - |
| RG42_RS24505 () | 38305..40338 | - | 2034 | WP_001717177.1 | methionine--tRNA ligase | - |
| RG42_RS24510 () | 40496..41596 | + | 1101 | WP_000004356.1 | iron-sulfur cluster carrier protein ApbC | - |
| RG42_RS24515 () | 41633..42022 | - | 390 | WP_000506720.1 | DNA repair protein | - |
| RG42_RS24520 () | 42121..42372 | - | 252 | WP_001755493.1 | DNA polymerase III subunit theta | - |
| RG42_RS24530 () | 42731..44287 | + | 1557 | WP_001755496.1 | type I restriction-modification system subunit M | - |
| RG42_RS24535 () | 44284..45531 | + | 1248 | WP_001293038.1 | restriction endonuclease subunit S | - |
| RG42_RS24540 () | 45653..48769 | + | 3117 | WP_000149672.1 | HsdR family type I site-specific deoxyribonuclease | - |
| RG42_RS24545 () | 48828..49304 | - | 477 | WP_001090450.1 | hypothetical protein | - |
| RG42_RS24550 () | 49408..50022 | - | 615 | WP_000467663.1 | hypothetical protein | - |
| RG42_RS24560 () | 50361..50930 | - | 570 | WP_000335122.1 | hypothetical protein | - |
| RG42_RS24565 () | 51070..51228 | - | 159 | WP_000893471.1 | DUF3927 family protein | - |
| RG42_RS24570 () | 51228..51653 | - | 426 | WP_000900262.1 | tellurite/colicin resistance protein | - |
| RG42_RS24575 () | 51747..51935 | - | 189 | WP_001104328.1 | hypothetical protein | - |
| RG42_RS24580 () | 51945..52439 | - | 495 | WP_001348724.1 | hypothetical protein | - |
| RG42_RS24585 () | 52588..53178 | - | 591 | WP_000208893.1 | ribonuclease HI | - |
| RG42_RS24590 () | 53765..53995 | - | 231 | WP_000121544.1 | hypothetical protein | - |
| RG42_RS24595 () | 54182..54775 | - | 594 | WP_073503556.1 | phage N-6-adenine-methyltransferase | - |
| RG42_RS24600 () | 54959..55768 | - | 810 | WP_000099880.1 | hypothetical protein | - |
| RG42_RS24605 () | 55927..56484 | - | 558 | WP_016607532.1 | 3'-5' exonuclease | - |
| RG42_RS24610 () | 56494..56913 | - | 420 | WP_001718079.1 | hypothetical protein | - |
| RG42_RS24615 () | 56975..57619 | - | 645 | WP_000386469.1 | AAA family ATPase | - |
| RG42_RS24620 () | 57619..58095 | - | 477 | WP_073503557.1 | dihydrofolate reductase | - |
| RG42_RS24625 () | 58092..58493 | - | 402 | WP_000289389.1 | hypothetical protein | - |
| RG42_RS24630 () | 58507..59610 | - | 1104 | WP_073503558.1 | thymidylate synthase | - |
| RG42_RS24635 () | 59782..60651 | - | 870 | WP_073503559.1 | phosphoribosyl-ATP pyrophosphohydrolase | - |
| RG42_RS24640 () | 60729..61871 | - | 1143 | WP_000122502.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| RG42_RS24645 () | 61978..64293 | - | 2316 | WP_073503560.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| RG42_RS24650 () | 64367..64936 | - | 570 | WP_000037962.1 | hypothetical protein | - |
| RG42_RS24655 () | 64946..65689 | - | 744 | WP_053902540.1 | hypothetical protein | - |
| RG42_RS24660 () | 65679..67595 | - | 1917 | WP_000670359.1 | AAA family ATPase | - |
| RG42_RS24670 () | 67825..68910 | - | 1086 | WP_000174803.1 | metallophosphoesterase | - |
| RG42_RS24675 () | 69165..69809 | - | 645 | WP_000364573.1 | hypothetical protein | - |
| RG42_RS24680 () | 70011..71225 | + | 1215 | WP_162739249.1 | RepB family plasmid replication initiator protein | - |
| RG42_RS24685 () | 71805..72017 | - | 213 | WP_073503561.1 | hypothetical protein | - |
| RG42_RS24690 () | 72017..72352 | - | 336 | WP_000644408.1 | hypothetical protein | - |
| RG42_RS24700 () | 72568..72843 | - | 276 | WP_073503562.1 | hypothetical protein | - |
| RG42_RS24705 () | 72899..73324 | - | 426 | WP_000125192.1 | hypothetical protein | - |
| RG42_RS24710 () | 73404..75743 | - | 2340 | WP_073503563.1 | recombinase RecA | - |
| RG42_RS24715 () | 75746..76012 | - | 267 | WP_000920225.1 | hypothetical protein | - |
| RG42_RS24720 () | 76012..76956 | - | 945 | WP_001717299.1 | 5'-3' exonuclease SAM fold family protein | - |
| RG42_RS24725 () | 77017..78045 | - | 1029 | WP_025670478.1 | hypothetical protein | - |
| RG42_RS24730 () | 78163..78594 | - | 432 | WP_001090697.1 | hypothetical protein | - |
| RG42_RS24740 () | 79134..79697 | + | 564 | WP_001240351.1 | hypothetical protein | - |
| RG42_RS24745 () | 80027..80242 | + | 216 | WP_000066497.1 | cold shock protein CspG | - |
| RG42_RS24750 () | 80546..84052 | - | 3507 | WP_073503564.1 | DNA polymerase III subunit alpha | - |
| RG42_RS24760 () | 84233..85468 | - | 1236 | WP_073503565.1 | MoxR family ATPase | - |
| RG42_RS24765 () | 85564..87672 | - | 2109 | WP_073503566.1 | cobalamin biosynthesis protein CobT | - |
| RG42_RS24770 () | 87771..87983 | - | 213 | WP_024269779.1 | hypothetical protein | - |
| RG42_RS24775 () | 88235..88621 | + | 387 | WP_001282577.1 | helix-turn-helix domain-containing protein | - |
| RG42_RS24780 () | 88616..89719 | - | 1104 | WP_000797845.1 | site-specific integrase | - |
| RG42_RS24785 () | 89930..90175 | - | 246 | WP_000156433.1 | GrxA family glutaredoxin | - |
| RG42_RS24790 () | 90172..90522 | - | 351 | WP_025670480.1 | hypothetical protein | - |
| RG42_RS24810 () | 92176..92466 | - | 291 | WP_000067985.1 | hypothetical protein | - |
| RG42_RS24820 () | 92824..94146 | - | 1323 | WP_073503567.1 | DNA ligase | - |
| RG42_RS26805 () | 94181..94656 | - | 476 | Protein_94 | hypothetical protein | - |
| RG42_RS24830 () | 94737..95549 | - | 813 | WP_032187677.1 | hypothetical protein | - |
| RG42_RS24835 () | 95645..96015 | - | 371 | Protein_96 | transposase | - |
| RG42_RS24845 () | 96214..97196 | + | 983 | Protein_97 | IS3 family transposase | - |
| RG42_RS24850 () | 97338..97889 | + | 552 | WP_073503569.1 | fimbrial protein YehD | - |
| RG42_RS24855 () | 97945..98625 | + | 681 | WP_032187672.1 | fimbrial assembly chaperone | - |
| RG42_RS24860 () | 98643..101129 | + | 2487 | WP_073503570.1 | fimbria/pilus outer membrane usher protein | - |
| RG42_RS24865 () | 101141..102160 | + | 1020 | WP_073503571.1 | type 1 fimbrial protein | - |
| RG42_RS24870 () | 102345..102566 | + | 222 | WP_001603498.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| RG42_RS24875 () | 102566..102943 | + | 378 | WP_053291281.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| RG42_RS24880 () | 103077..104192 | - | 1116 | WP_032187668.1 | DNA primase | - |
| RG42_RS24885 () | 104349..105689 | - | 1341 | WP_073503572.1 | AAA family ATPase | - |
| RG42_RS24890 () | 105750..106475 | - | 726 | WP_073503573.1 | hypothetical protein | - |
| RG42_RS24895 () | 106758..107525 | + | 768 | WP_000342417.1 | hypothetical protein | - |
| RG42_RS24900 () | 107578..107931 | - | 354 | WP_160378290.1 | hypothetical protein | - |
| RG42_RS24905 () | 107937..108605 | - | 669 | WP_000161228.1 | AAA family ATPase | - |
| RG42_RS24910 () | 108924..109193 | + | 270 | WP_001351987.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| RG42_RS24915 () | 109201..109722 | + | 522 | WP_000072677.1 | GNAT family N-acetyltransferase | Toxin Detail |
| RG42_RS24925 () | 109891..110142 | - | 252 | WP_000901559.1 | hypothetical protein | - |
| RG42_RS24930 () | 110144..110836 | - | 693 | WP_032084069.1 | membrane protein | - |
| RG42_RS24935 () | 110850..111173 | - | 324 | WP_032084070.1 | hypothetical protein | - |
| RG42_RS24940 () | 111248..112030 | - | 783 | WP_072647505.1 | receptor-recognizing protein | - |
| RG42_RS26600 () | 112096..114135 | - | 2040 | Protein_116 | tail fiber domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|