MGE detailed information
MGE type: Prophage MGE length: 34957 bp
Accession: NZ_CP010152 Location: 2007070..2042026 Organism: Escherichia coli strain D9 Replicon: chromosome
Accession: NZ_CP010152 Location: 2007070..2042026 Organism: Escherichia coli strain D9 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG42_RS26870 () | 2003059..2003106 | + | 48 | WP_211180494.1 | protein YnaN | - |
| RG42_RS10570 () | 2003120..2004103 | + | 984 | WP_073503286.1 | zinc transporter ZntB | - |
| RG42_RS10580 () | 2004581..2005954 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| RG42_RS10585 () | 2006083..2007018 | - | 936 | WP_073503287.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| RG42_RS10590 () | 2007070..2008305 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| RG42_RS10595 () | 2008307..2008522 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| RG42_RS10600 () | 2008601..2008810 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 2008626..2008804 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2008626..2008804 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2008626..2008804 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2008626..2008804 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| RG42_RS10605 () | 2008803..2008997 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| RG42_RS10610 () | 2009054..2009863 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| RG42_RS10615 () | 2009856..2012456 | - | 2601 | WP_001532611.1 | exodeoxyribonuclease VIII | - |
| RG42_RS10620 () | 2012558..2012833 | - | 276 | WP_000632297.1 | protein RacC | - |
| RG42_RS10625 () | 2012908..2013078 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| RG42_RS10630 () | 2013078..2013299 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| RG42_RS10640 () | 2013741..2014229 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| RG42_RS10645 () | 2014226..2014381 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| RG42_RS10655 () | 2014835..2015311 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| RG42_RS10660 () | 2015435..2015731 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| RG42_RS10665 () | 2015754..2016175 | + | 422 | Protein_1882 | hypothetical protein | - |
| RG42_RS10670 () | 2016188..2017045 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| RG42_RS10675 () | 2017052..2017798 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| RG42_RS10680 () | 2017821..2018582 | + | 762 | WP_073503288.1 | DUF1627 domain-containing protein | - |
| RG42_RS10685 () | 2018598..2018975 | + | 378 | WP_001141106.1 | DUF977 family protein | - |
| RG42_RS10690 () | 2019266..2020948 | + | 1683 | WP_073503289.1 | DUF262 domain-containing HNH endonuclease family protein | - |
| RG42_RS10695 () | 2021476..2022525 | + | 1050 | WP_000505828.1 | tetratricopeptide repeat protein | - |
| RG42_RS10700 () | 2023100..2023255 | + | 156 | WP_021554378.1 | type I toxin-antitoxin system Hok family toxin | - |
| RG42_RS10710 () | 2023449..2024561 | - | 1113 | WP_074014158.1 | IS4 family transposase IS421 | Transposase |
| RG42_RS10720 () | 2025068..2025667 | + | 600 | WP_000940319.1 | DUF1367 family protein | - |
| RG42_RS10725 () | 2025667..2025957 | + | 291 | WP_000247762.1 | DUF1364 domain-containing protein | - |
| RG42_RS10730 () | 2025954..2026496 | + | 543 | WP_000640161.1 | DUF1133 family protein | - |
| RG42_RS10735 () | 2027541..2027969 | + | 429 | WP_073503291.1 | cell envelope integrity protein TolA | - |
| RG42_RS10740 () | 2028141..2028515 | + | 375 | WP_001348108.1 | hypothetical protein | - |
| RG42_RS10745 () | 2028767..2028982 | + | 216 | WP_000839565.1 | phage lysis protein EssD | - |
| RG42_RS10750 () | 2028982..2029479 | + | 498 | WP_001135280.1 | lysozyme RrrD | - |
| RG42_RS25930 () | 2029696..2029881 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| RG42_RS10760 () | 2030078..2031535 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| RG42_RS10770 () | 2031673..2032464 | + | 792 | WP_016232661.1 | ParB/Srx family N-terminal domain-containing protein | - |
| RG42_RS10775 () | 2032457..2033389 | + | 933 | WP_001742940.1 | hypothetical protein | - |
| RG42_RS10780 () | 2033325..2033576 | + | 252 | WP_187649179.1 | hypothetical protein | - |
| RG42_RS10785 () | 2033580..2034674 | + | 1095 | WP_073503294.1 | terminase small subunit | - |
| RG42_RS10790 () | 2034655..2035956 | + | 1302 | WP_073503295.1 | terminase family protein | - |
| RG42_RS10795 () | 2035959..2037059 | + | 1101 | Protein_1905 | DUF4055 domain-containing protein | - |
| RG42_RS10800 () | 2037142..2037546 | + | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| RG42_RS10805 () | 2037543..2037890 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| RG42_RS10810 () | 2037939..2039477 | + | 1539 | WP_000099202.1 | IS66 family transposase ISEc22 | Transposase |
| RG42_RS10835 () | 2040823..2041338 | + | 516 | Protein_1910 | tail fiber assembly protein | - |
| RG42_RS10840 () | 2041436..2042026 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| RG42_RS10845 () | 2042343..2042576 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| RG42_RS26380 () | 2042645..2042758 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| RG42_RS26720 () | 2043098..2043271 | + | 174 | WP_001157925.1 | hypothetical protein | - |
| RG42_RS10850 () | 2043537..2043971 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| RG42_RS10855 () | 2044112..2045245 | - | 1134 | WP_073503298.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|