MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 117393 bp
Accession: NZ_CP010143 Location: 4607464..4724856 Organism: Escherichia coli strain D4 Replicon: chromosome
Accession: NZ_CP010143 Location: 4607464..4724856 Organism: Escherichia coli strain D4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG37_RS24075 () | 4603336..4604286 | - | 951 | WP_000023081.1 | type I pantothenate kinase | - |
| RG37_RS24110 () | 4605204..4606388 | + | 1185 | WP_000031784.1 | elongation factor Tu | - |
| RG37_RS24115 () | 4606618..4607001 | + | 384 | WP_001275702.1 | preprotein translocase subunit SecE | - |
| RG37_RS24120 () | 4607003..4607548 | + | 546 | WP_001287516.1 | transcription termination/antitermination protein NusG | - |
| RG37_RS24125 () | 4607707..4608135 | + | 429 | WP_001085926.1 | 50S ribosomal protein L11 | - |
| RG37_RS24130 () | 4608139..4608843 | + | 705 | WP_001096684.1 | 50S ribosomal protein L1 | - |
| RG37_RS24140 () | 4609256..4609753 | + | 498 | WP_001207201.1 | 50S ribosomal protein L10 | - |
| RG37_RS24145 () | 4609820..4610185 | + | 366 | WP_000028878.1 | 50S ribosomal protein L7/L12 | - |
| RG37_RS24150 () | 4610505..4614533 | + | 4029 | WP_000263098.1 | DNA-directed RNA polymerase subunit beta | - |
| RG37_RS24155 () | 4614610..4618833 | + | 4224 | WP_073503512.1 | DNA-directed RNA polymerase subunit beta' | - |
| RG37_RS24160 () | 4619046..4619585 | + | 540 | WP_001307500.1 | heat-shock protein C | - |
| RG37_RS24165 () | 4619995..4621128 | - | 1134 | WP_000847447.1 | 2-iminoacetate synthase ThiH | - |
| RG37_RS24170 () | 4621125..4621895 | - | 771 | WP_000944104.1 | thiazole synthase | - |
| RG37_RS24175 () | 4621897..4622097 | - | 201 | WP_001166226.1 | sulfur carrier protein ThiS | - |
| RG37_RS24180 () | 4622081..4622836 | - | 756 | WP_000999737.1 | thiazole biosynthesis adenylyltransferase ThiF | - |
| RG37_RS24185 () | 4622829..4623464 | - | 636 | WP_000284615.1 | thiamine phosphate synthase | - |
| RG37_RS24190 () | 4623464..4625359 | - | 1896 | WP_001276926.1 | phosphomethylpyrimidine synthase ThiC | - |
| RG37_RS24195 () | 4625592..4626068 | - | 477 | WP_000934302.1 | sigma D regulator | - |
| RG37_RS24200 () | 4626163..4626936 | + | 774 | WP_073503513.1 | NAD(+) diphosphatase | - |
| RG37_RS24205 () | 4626976..4628040 | + | 1065 | WP_000137657.1 | uroporphyrinogen decarboxylase | - |
| RG37_RS24210 () | 4628050..4628721 | + | 672 | WP_000362388.1 | deoxyribonuclease V | - |
| RG37_RS24215 () | 4628764..4629354 | + | 591 | WP_000940106.1 | YjaG family protein | - |
| RG37_RS24220 () | 4629541..4629813 | + | 273 | WP_001044513.1 | DNA-binding protein HU-alpha | - |
| RG37_RS24225 () | 4629826..4630521 | + | 696 | WP_001084037.1 | DUF1481 domain-containing protein | - |
| RG37_RS24230 () | 4630523..4630948 | - | 426 | WP_000828222.1 | zinc resistance sensor/chaperone ZraP | - |
| RG37_RS24240 () | 4631186..4632583 | + | 1398 | WP_073503514.1 | two-component system sensor histidine kinase ZraS | - |
| RG37_RS24245 () | 4632580..4633905 | + | 1326 | WP_000148503.1 | sigma-54-dependent response regulator transcription factor ZraR | - |
| RG37_RS24250 () | 4633902..4635191 | - | 1290 | WP_000866800.1 | phosphoribosylamine--glycine ligase | - |
| RG37_RS24255 () | 4635203..4636792 | - | 1590 | WP_001187559.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| RG37_RS24270 () | 4638952..4639518 | - | 567 | Protein_4327 | IS6-like element IS26 family transposase | - |
| RG37_RS24275 () | 4639582..4640511 | - | 930 | Protein_4328 | IS21-like element ISEc57 family transposase | - |
| RG37_RS27005 () | 4640600..4640761 | - | 162 | Protein_4329 | IS91 family transposase | - |
| RG37_RS24285 () | 4640873..4641178 | - | 306 | WP_001255015.1 | LysR family transcriptional regulator | - |
| RG37_RS24290 () | 4641206..4642420 | - | 1215 | WP_058100717.1 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
| RG37_RS27385 () | 4642637..4643083 | - | 447 | Protein_4332 | DUF3363 domain-containing protein | - |
| RG37_RS24305 () | 4643545..4645038 | - | 1494 | WP_015344975.1 | IS91-like element ISVsa3 family transposase | - |
| RG37_RS26560 () | 4645249..4645473 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| RG37_RS24310 () | 4645546..4646250 | + | 705 | WP_073503516.1 | IS6-like element IS26 family transposase | - |
| RG37_RS24315 () | 4646294..4647487 | + | 1194 | Protein_4336 | topoisomerase C-terminal repeat-containing protein | - |
| RG37_RS24320 () | 4647499..4647948 | + | 450 | WP_001282381.1 | H-NS histone family protein | - |
| RG37_RS24325 () | 4648011..4648415 | + | 405 | WP_000059893.1 | hypothetical protein | - |
| RG37_RS24330 () | 4648783..4649421 | - | 639 | WP_038976852.1 | recombinase family protein | - |
| RG37_RS24335 () | 4649707..4650327 | + | 621 | WP_000864791.1 | ParA family protein | - |
| RG37_RS24340 () | 4650379..4650609 | + | 231 | WP_000051064.1 | partitioning protein | - |
| RG37_RS24345 () | 4650625..4650918 | + | 294 | WP_015060510.1 | hypothetical protein | - |
| RG37_RS24350 () | 4650920..4651888 | + | 969 | WP_077249520.1 | IS5-like element IS903B family transposase | - |
| RG37_RS24355 () | 4651948..4652370 | - | 423 | WP_031942371.1 | DNA distortion polypeptide 3 | - |
| RG37_RS24360 () | 4652438..4652884 | - | 447 | WP_001074386.1 | hypothetical protein | - |
| RG37_RS24365 () | 4652924..4653760 | - | 837 | WP_001050931.1 | replication initiation protein | - |
| RG37_RS24375 () | 4655016..4655267 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| RG37_RS24380 () | 4655257..4655538 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RG37_RS24385 () | 4655684..4656007 | + | 324 | WP_001181903.1 | hypothetical protein | - |
| RG37_RS24390 () | 4656052..4656297 | + | 246 | WP_000356546.1 | hypothetical protein | - |
| RG37_RS24395 () | 4656287..4656502 | + | 216 | WP_001180116.1 | hypothetical protein | - |
| RG37_RS24400 () | 4656595..4656924 | + | 330 | WP_000866648.1 | hypothetical protein | - |
| RG37_RS27220 () | 4657211..4657360 | + | 150 | WP_000003880.1 | hypothetical protein | - |
| RG37_RS24405 () | 4657373..4657645 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| RG37_RS24410 () | 4657972..4658517 | + | 546 | WP_038976855.1 | hypothetical protein | - |
| RG37_RS24415 () | 4658520..4659677 | + | 1158 | WP_000538023.1 | hypothetical protein | - |
| RG37_RS24420 () | 4660038..4660529 | + | 492 | WP_000872475.1 | transcription termination factor NusG | - |
| RG37_RS24430 () | 4660754..4661398 | + | 645 | WP_000953539.1 | lytic transglycosylase domain-containing protein | - |
| RG37_RS24435 () | 4661382..4661672 | + | 291 | WP_000921916.1 | TrbC/VirB2 family protein | - |
| RG37_RS24440 () | 4661696..4664455 | + | 2760 | WP_000108725.1 | VirB3 family type IV secretion system protein | - |
| RG37_RS24445 () | 4664457..4665194 | + | 738 | WP_000737859.1 | pilus assembly protein | - |
| RG37_RS24450 () | 4665204..4665464 | + | 261 | WP_001228869.1 | EexN family lipoprotein | - |
| RG37_RS24455 () | 4665476..4666531 | + | 1056 | WP_000235774.1 | type IV secretion system protein | - |
| RG37_RS24460 () | 4666721..4667443 | + | 723 | WP_000394570.1 | type IV secretion system protein | - |
| RG37_RS24465 () | 4667449..4668378 | + | 930 | WP_000776689.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| RG37_RS24470 () | 4668375..4669589 | + | 1215 | WP_073503517.1 | TrbI/VirB10 family protein | - |
| RG37_RS24475 () | 4669607..4670644 | + | 1038 | WP_000217791.1 | P-type DNA transfer ATPase VirB11 | - |
| RG37_RS24480 () | 4670649..4672484 | + | 1836 | WP_000053826.1 | type IV secretory system conjugative DNA transfer family protein | - |
| RG37_RS24485 () | 4672481..4672876 | + | 396 | WP_000733627.1 | cag pathogenicity island Cag12 family protein | - |
| RG37_RS24490 () | 4673002..4673211 | + | 210 | WP_073503548.1 | hypothetical protein | - |
| RG37_RS24495 () | 4673454..4674269 | + | 816 | WP_000018321.1 | aminoglycoside O-phosphotransferase APH(3')-Ia | - |
| RG37_RS24500 () | 4674346..4675221 | + | 876 | WP_073503518.1 | SDR family oxidoreductase | - |
| RG37_RS24505 () | 4675313..4675642 | + | 330 | WP_073503519.1 | ATP-binding cassette domain-containing protein | - |
| RG37_RS24510 () | 4675689..4676393 | + | 705 | WP_073503520.1 | IS6-like element IS26 family transposase | - |
| RG37_RS24515 () | 4676339..4676998 | - | 660 | WP_077898834.1 | SprT-like domain-containing protein | - |
| RG37_RS24520 () | 4677282..4677938 | - | 657 | WP_012537714.1 | quinolone resistance pentapeptide repeat protein QnrS2 | - |
| RG37_RS24530 () | 4678222..4678926 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| RG37_RS24535 () | 4678992..4681184 | + | 2193 | Protein_4378 | poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | - |
| RG37_RS24540 () | 4681194..4683215 | + | 2022 | WP_034167706.1 | poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB | - |
| RG37_RS24545 () | 4683212..4684546 | + | 1335 | WP_034167705.1 | poly-beta-1,6 N-acetyl-D-glucosamine synthase | - |
| RG37_RS24550 () | 4684543..4685049 | + | 507 | WP_034167704.1 | poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD | - |
| RG37_RS27025 () | 4685130..4685225 | + | 96 | Protein_4382 | (4Fe-4S)-binding protein | - |
| RG37_RS24560 () | 4685289..4685992 | + | 704 | Protein_4383 | IS6-like element IS26 family transposase | - |
| RG37_RS24565 () | 4686047..4687771 | + | 1725 | Protein_4384 | Tn3-like element ISEc63 family transposase | - |
| RG37_RS24570 () | 4687976..4688221 | - | 246 | WP_072037363.1 | transcriptional regulator | - |
| RG37_RS24575 () | 4688449..4689477 | - | 1029 | WP_063073394.1 | tyrosine-type recombinase/integrase | - |
| RG37_RS24580 () | 4689875..4690912 | + | 1038 | WP_048659773.1 | hypothetical protein | - |
| RG37_RS24585 () | 4690940..4691692 | - | 753 | Protein_4388 | terminase | - |
| RG37_RS24590 () | 4691758..4692461 | + | 704 | Protein_4389 | IS6-like element IS26 family transposase | - |
| RG37_RS24595 () | 4692512..4692742 | + | 231 | Protein_4390 | IS1 family transposase | - |
| RG37_RS27040 () | 4692888..4693145 | + | 258 | WP_105278499.1 | hypothetical protein | - |
| RG37_RS24600 () | 4693182..4694150 | - | 969 | WP_077783444.1 | IS5 family transposase | - |
| RG37_RS24605 () | 4694185..4694460 | + | 276 | Protein_4393 | peptidoglycan DD-metalloendopeptidase family protein | - |
| RG37_RS24610 () | 4694494..4694691 | - | 198 | WP_000843497.1 | DUF2933 domain-containing protein | - |
| RG37_RS24615 () | 4694732..4697209 | - | 2478 | WP_001398208.1 | Ag(+)-translocating P-type ATPase SilP | - |
| RG37_RS24620 () | 4697307..4697747 | - | 441 | WP_000758229.1 | hypothetical protein | - |
| RG37_RS24625 () | 4697834..4700980 | - | 3147 | WP_020219104.1 | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | - |
| RG37_RS24630 () | 4700991..4702283 | - | 1293 | WP_001381488.1 | Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB | - |
| RG37_RS24635 () | 4702397..4702750 | - | 354 | WP_053885803.1 | cation efflux system protein CusF | - |
| RG37_RS24640 () | 4702778..4704163 | - | 1386 | WP_000475512.1 | Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC | - |
| RG37_RS24645 () | 4704353..4705033 | + | 681 | WP_000697969.1 | copper/silver response regulator transcription factor SilR | - |
| RG37_RS24650 () | 4705026..4706501 | + | 1476 | WP_000555737.1 | copper/silver sensor histidine kinase SilS | - |
| RG37_RS24655 () | 4706752..4707183 | + | 432 | WP_000790483.1 | silver-binding protein SilE | - |
| RG37_RS24660 () | 4707327..4707635 | + | 309 | WP_025670887.1 | DUF305 domain-containing protein | - |
| RG37_RS24665 () | 4707629..4708326 | - | 698 | Protein_4405 | IS1 family transposase | - |
| RG37_RS24685 () | 4708431..4709294 | + | 864 | WP_000612791.1 | SDR family oxidoreductase | - |
| RG37_RS24690 () | 4709332..4709577 | + | 246 | WP_001354008.1 | GrpB family protein | - |
| RG37_RS24700 () | 4710046..4710837 | + | 792 | WP_000034420.1 | sulfonamide-resistant dihydropteroate synthase Sul3 | - |
| RG37_RS27225 () | 4710840..4711115 | - | 276 | WP_109023896.1 | hypothetical protein | - |
| RG37_RS24705 () | 4711138..4711770 | + | 633 | WP_020802982.1 | IS256 family transposase | - |
| RG37_RS24715 () | 4712017..4712349 | - | 333 | WP_000800531.1 | quaternary ammonium compound efflux SMR transporter QacL | - |
| RG37_RS24720 () | 4712519..4713310 | - | 792 | WP_001206316.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | - |
| RG37_RS24725 () | 4713403..4714662 | - | 1260 | WP_000095725.1 | chloramphenicol efflux MFS transporter CmlA1 | - |
| RG37_RS24730 () | 4714924..4715715 | - | 792 | WP_001206356.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 | - |
| RG37_RS27050 () | 4715721..4716011 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| RG37_RS24740 () | 4716123..4716620 | - | 498 | WP_001083725.1 | trimethoprim-resistant dihydrofolate reductase DfrA12 | - |
| RG37_RS24750 () | 4716765..4716962 | + | 198 | Protein_4417 | phage integrase N-terminal SAM-like domain-containing protein | - |
| RG37_RS24755 () | 4717025..4717729 | + | 705 | WP_073503516.1 | IS6-like element IS26 family transposase | - |
| RG37_RS24760 () | 4718400..4719104 | + | 705 | WP_073503520.1 | IS6-like element IS26 family transposase | - |
| RG37_RS24765 () | 4719458..4719640 | - | 183 | WP_073503523.1 | hypothetical protein | - |
| RG37_RS24770 () | 4719637..4720605 | - | 969 | WP_031942297.1 | IS5-like element IS903B family transposase | - |
| RG37_RS24775 () | 4720792..4722237 | - | 1446 | WP_196606222.1 | tetratricopeptide repeat protein | - |
| RG37_RS24780 () | 4722213..4725152 | - | 2940 | WP_049100257.1 | AAA family ATPase | - |
| RG37_RS24785 () | 4725230..4725421 | - | 192 | WP_000861580.1 | hypothetical protein | - |
| RG37_RS24790 () | 4725430..4725816 | - | 387 | WP_001039463.1 | hypothetical protein | - |
| RG37_RS24810 () | 4726483..4727180 | + | 698 | Protein_4426 | IS1 family transposase | - |
| RG37_RS24815 () | 4727337..4727846 | - | 510 | WP_039022248.1 | hypothetical protein | - |
| RG37_RS24820 () | 4727858..4728439 | - | 582 | WP_029396071.1 | hypothetical protein | - |
| RG37_RS24825 () | 4728475..4729290 | - | 816 | WP_039022247.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|