MGE detailed information
MGE type: Conjugative plasmid MGE length: 90974 bp
Accession: NZ_CP010142 Location: 1..90974 Organism: Escherichia coli strain D3 Replicon: plasmid B
Accession: NZ_CP010142 Location: 1..90974 Organism: Escherichia coli strain D3 Replicon: plasmid B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG36_RS27400 () | 545..1420 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| RG36_RS27405 () | 1467..1799 | - | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| RG36_RS27410 () | 1754..3148 | + | 1395 | WP_023150520.1 | hypothetical protein | - |
| RG36_RS29540 () | 3663..3965 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| RG36_RS27420 () | 3962..4588 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| RG36_RS27425 () | 4776..6047 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| RG36_RS27430 () | 6047..6484 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| RG36_RS27435 () | 6481..6729 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| RG36_RS27445 () | 7147..8049 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| RG36_RS27450 () | 8144..8479 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| RG36_RS27455 () | 8817..9797 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| RG36_RS27460 () | 9800..10222 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| RG36_RS27465 () | 10226..10537 | + | 312 | WP_033863049.1 | hypothetical protein | - |
| RG36_RS27470 () | 10613..11296 | + | 684 | WP_000086127.1 | DNA methylase | - |
| RG36_RS27475 () | 11297..11518 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| RG36_RS27480 () | 11532..11966 | + | 435 | WP_000274484.1 | DUF1380 family protein | - |
| RG36_RS27485 () | 12011..12781 | + | 771 | WP_012783922.1 | hypothetical protein | - |
| RG36_RS27495 () | 13317..13619 | + | 303 | WP_014653258.1 | antirestriction protein | - |
| RG36_RS27500 () | 13666..14088 | + | 423 | WP_000271703.1 | DUF1380 family protein | - |
| RG36_RS27505 () | 14085..14276 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| RG36_RS29395 () | 14414..14677 | + | 264 | WP_158213465.1 | hypothetical protein | - |
| RG36_RS27525 () | 15061..15588 | + | 528 | WP_012783926.1 | single-stranded DNA-binding protein | - |
| RG36_RS27530 () | 15646..15879 | + | 234 | WP_015508350.1 | DUF905 domain-containing protein | - |
| RG36_RS27535 () | 15938..17896 | + | 1959 | WP_073545354.1 | ParB/RepB/Spo0J family partition protein | - |
| RG36_RS27540 () | 17949..18383 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| RG36_RS27545 () | 18380..19099 | + | 720 | WP_012783927.1 | plasmid SOS inhibition protein A | - |
| RG36_RS27550 () | 19096..19692 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| RG36_RS27560 () | 20154..20654 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| RG36_RS27570 () | 21383..21817 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| RG36_RS27575 () | 21911..22177 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| RG36_RS27580 () | 22354..22743 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| RG36_RS27585 () | 22740..23642 | + | 903 | WP_000038333.1 | Recombination-promoting nuclease RpnA | VF |
| RG36_RS27590 () | 23704..23910 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| RG36_RS27595 () | 23941..24192 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| RG36_RS29545 () | 24226..24423 | - | 198 | WP_001161106.1 | hypothetical protein | - |
| RG36_RS27610 () | 24772..25620 | + | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| RG36_RS27615 () | 25706..26041 | - | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| RG36_RS27620 () | 26275..26607 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| RG36_RS27625 () | 26618..29317 | + | 2700 | WP_012783930.1 | Protein TraI | Relaxase |
| RG36_RS27630 () | 29354..31645 | - | 2292 | WP_012783931.1 | hypothetical protein | - |
| RG36_RS27635 () | 31638..32708 | - | 1071 | WP_012783932.1 | IncI1-type conjugal transfer protein TrbB | - |
| RG36_RS27640 () | 32727..33935 | - | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 34115..34172 | - | 58 | NuclAT_1 | - | - |
| - () | 34115..34172 | - | 58 | NuclAT_1 | - | - |
| - () | 34115..34172 | - | 58 | NuclAT_1 | - | - |
| - () | 34115..34172 | - | 58 | NuclAT_1 | - | - |
| RG36_RS27645 () | 34242..35333 | - | 1092 | WP_000426061.1 | hypothetical protein | - |
| - () | 35536..35596 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 35536..35596 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 35536..35596 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 35536..35596 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| RG36_RS27650 () | 35648..35800 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| RG36_RS27655 () | 35872..36123 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| RG36_RS27660 () | 36423..36719 | + | 297 | WP_011264046.1 | hypothetical protein | - |
| RG36_RS29550 () | 36784..36960 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| RG36_RS27675 () | 37352..37561 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| RG36_RS27680 () | 37633..38295 | - | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| RG36_RS27685 () | 38366..40534 | - | 2169 | WP_015508354.1 | DotA/TraY family protein | - |
| RG36_RS27690 () | 40631..41215 | - | 585 | WP_012783937.1 | conjugal transfer protein TraX | - |
| RG36_RS27695 () | 41244..42446 | - | 1203 | WP_012783938.1 | IncI1-type conjugal transfer protein TraW | - |
| RG36_RS27700 () | 42413..43027 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| RG36_RS27705 () | 43027..46071 | - | 3045 | WP_012783939.1 | IncI1-type conjugal transfer protein TraU | - |
| RG36_RS27710 () | 46161..46961 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| RG36_RS27715 () | 46945..47133 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| RG36_RS27720 () | 47197..47601 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| RG36_RS27725 () | 47652..48179 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| RG36_RS27730 () | 48179..48883 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| RG36_RS27735 () | 48883..50172 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| RG36_RS27740 () | 50175..51158 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| RG36_RS27745 () | 51169..51861 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| RG36_RS27750 () | 51858..52205 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| RG36_RS27755 () | 52223..55990 | - | 3768 | WP_012783940.1 | SogL protein | - |
| RG36_RS27760 () | 56080..56301 | - | 222 | Protein_65 | Phospholipase D | VF |
| RG36_RS27765 () | 56388..56813 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| RG36_RS27770 () | 56810..57160 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| RG36_RS27775 () | 57191..58804 | + | 1614 | WP_000080200.1 | IS66 family transposase ISEc23 | Transposase |
| RG36_RS27780 () | 58836..59171 | - | 336 | Protein_69 | Phospholipase D | VF |
| RG36_RS27785 () | 59186..59476 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| RG36_RS27790 () | 59473..60621 | - | 1149 | WP_001024971.1 | putative protein YggR | VF |
| RG36_RS27795 () | 60618..61436 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| RG36_RS27800 () | 61433..61891 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| RG36_RS27805 () | 62285..62869 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| RG36_RS27810 () | 62929..64131 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| RG36_RS27815 () | 64217..65041 | - | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| RG36_RS27820 () | 65192..66346 | - | 1155 | WP_001139955.1 | integrase | - |
| RG36_RS29555 () | 66330..66455 | + | 126 | Protein_78 | prepilin, shufflon protein A | - |
| RG36_RS29115 () | 66504..66752 | + | 249 | WP_001349157.1 | hypothetical protein | - |
| RG36_RS27830 () | 66749..68041 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| RG36_RS27835 () | 68041..68697 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| RG36_RS27840 () | 68682..69242 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| RG36_RS27845 () | 69252..69866 | - | 615 | WP_001542527.1 | hypothetical protein | VF |
| RG36_RS27850 () | 69884..70981 | - | 1098 | WP_001492931.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| RG36_RS27855 () | 70994..72547 | - | 1554 | WP_001492932.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| RG36_RS27860 () | 72558..73010 | - | 453 | WP_012783945.1 | hypothetical protein | VF |
| RG36_RS27865 () | 72997..74292 | - | 1296 | WP_012783946.1 | type 4b pilus protein PilO2 | - |
| RG36_RS27870 () | 74285..75967 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| RG36_RS27875 () | 75981..76418 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| RG36_RS27880 () | 76418..77485 | - | 1068 | WP_012783947.1 | hypothetical protein | VF |
| RG36_RS27890 () | 78109..78405 | - | 297 | WP_000494780.1 | hypothetical protein | - |
| RG36_RS27895 () | 78572..78826 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| RG36_RS27900 () | 78988..79539 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| RG36_RS27910 () | 79712..80395 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| RG36_RS27920 () | 80649..81182 | - | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| RG36_RS27930 () | 81624..81911 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| RG36_RS27935 () | 81829..82092 | - | 264 | WP_001749178.1 | ash family protein | - |
| RG36_RS27950 () | 83065..84096 | + | 1032 | WP_024176529.1 | replication initiation protein | - |
| RG36_RS29400 () | 84793..84933 | + | 141 | WP_032072206.1 | hypothetical protein | - |
| RG36_RS27955 () | 85166..85675 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| RG36_RS27960 () | 85731..86333 | - | 603 | WP_001703912.1 | hypothetical protein | - |
| RG36_RS28585 () | 86888..87061 | + | 174 | Protein_102 | IS1380 family transposase ISEcp1 | Transposase |
| RG36_RS29125 () | 87170..87475 | + | 306 | Protein_103 | IS4 family transposase | - |
| RG36_RS29405 () | 87420..87563 | - | 144 | WP_162780439.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| RG36_RS27980 () | 87727..88284 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| RG36_RS27985 () | 88467..89327 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| RG36_RS27990 () | 89476..90153 | + | 678 | Protein_107 | IS4 family transposase IS10R | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|