MGE detailed information
MGE type: Prophage MGE length: 68865 bp
Accession: NZ_CP010133 Location: 4851467..4920331 Organism: Escherichia coli strain C11 Replicon: chromosome
Accession: NZ_CP010133 Location: 4851467..4920331 Organism: Escherichia coli strain C11 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG33_RS25025 () | 4847366..4848586 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| RG33_RS25030 () | 4848711..4849406 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| RG33_RS25035 () | 4849359..4850651 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| RG33_RS25040 () | 4850810..4851424 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| RG33_RS25045 () | 4851467..4852321 | - | 855 | WP_000526490.1 | dimethyl sulfoxide reductase anchor subunit | - |
| RG33_RS25050 () | 4852323..4852940 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| RG33_RS25055 () | 4852951..4855374 | - | 2424 | WP_001342404.1 | dimethyl sulfoxide reductase subunit A | - |
| RG33_RS25060 () | 4855435..4857861 | - | 2427 | WP_000041556.1 | dimethyl sulfoxide reductase subunit A | - |
| RG33_RS25065 () | 4858060..4858365 | - | 306 | WP_001307224.1 | DUF1161 domain-containing protein | - |
| RG33_RS25070 () | 4858473..4859183 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| RG33_RS25075 () | 4859186..4859746 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| RG33_RS25080 () | 4859781..4860122 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| RG33_RS25085 () | 4860257..4860583 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| RG33_RS25095 () | 4860789..4862003 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| RG33_RS25100 () | 4862015..4863034 | + | 1020 | WP_000836057.1 | Zn-dependent oxidoreductase | - |
| RG33_RS25105 () | 4863092..4863202 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| RG33_RS25110 () | 4863222..4864502 | - | 1281 | WP_000876978.1 | Putative defective protein IntQ ; Integrase | Integrase |
| RG33_RS25115 () | 4864537..4864788 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| RG33_RS25120 () | 4864861..4867299 | - | 2439 | WP_000102147.1 | exonuclease | - |
| RG33_RS25125 () | 4867390..4867581 | - | 192 | WP_001070257.1 | DUF1482 family protein | - |
| RG33_RS25130 () | 4867578..4867766 | - | 189 | WP_000854562.1 | cell division inhibition protein DicB | - |
| RG33_RS25140 () | 4868334..4868552 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| RG33_RS25150 () | 4868712..4868867 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| RG33_RS25155 () | 4869034..4869441 | - | 408 | WP_040089727.1 | DNA-binding transcriptional dual regulator DicA | - |
| RG33_RS25160 () | 4869525..4869755 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| RG33_RS25165 () | 4869739..4870260 | + | 522 | WP_000705355.1 | hypothetical protein | - |
| RG33_RS25170 () | 4870241..4871206 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| RG33_RS25175 () | 4871247..4871669 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| RG33_RS25180 () | 4871666..4872022 | + | 357 | WP_001374839.1 | class I SAM-dependent methyltransferase | - |
| RG33_RS29400 () | 4872633..4872920 | + | 288 | Protein_4508 | hypothetical protein | - |
| RG33_RS25205 () | 4873689..4875030 | + | 1342 | Protein_4509 | ISNCY family transposase ISCARN112 | Transposase |
| RG33_RS25210 () | 4875467..4875799 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| RG33_RS25220 () | 4876002..4876307 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| RG33_RS25225 () | 4876332..4876571 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| RG33_RS25230 () | 4876571..4876858 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| RG33_RS25235 () | 4876930..4877085 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RG33_RS25240 () | 4877302..4877553 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| RG33_RS25245 () | 4877620..4877898 | + | 279 | WP_040090315.1 | hypothetical protein | - |
| RG33_RS25250 () | 4877900..4878949 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| RG33_RS25255 () | 4878963..4879715 | + | 753 | WP_040090316.1 | antitermination protein | - |
| RG33_RS29000 () | 4879994..4880083 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| RG33_RS25260 () | 4880138..4880350 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| RG33_RS25265 () | 4880651..4880866 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| RG33_RS29405 () | 4881230..4881400 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| RG33_RS25270 () | 4881620..4881835 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| RG33_RS25275 () | 4881840..4882151 | + | 312 | WP_000189915.1 | YdfR family protein | - |
| RG33_RS25280 () | 4882148..4882681 | + | 534 | WP_001092971.1 | lysozyme | - |
| RG33_RS25285 () | 4882678..4883175 | + | 498 | Protein_4526 | DUF2514 domain-containing protein | - |
| RG33_RS25290 () | 4883539..4883751 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| RG33_RS25295 () | 4883762..4883950 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| RG33_RS29005 () | 4883953..4884018 | + | 66 | WP_122134696.1 | hypothetical protein | - |
| RG33_RS25300 () | 4884098..4884253 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| RG33_RS25305 () | 4884425..4884598 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| RG33_RS25310 () | 4884750..4885160 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| RG33_RS25315 () | 4885218..4885451 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| RG33_RS25320 () | 4885840..4886385 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| RG33_RS25325 () | 4886360..4888285 | + | 1926 | WP_001027295.1 | phage terminase large subunit family protein | - |
| RG33_RS25330 () | 4888282..4888488 | + | 207 | WP_000198149.1 | gpW family protein | - |
| RG33_RS25335 () | 4888485..4890086 | + | 1602 | WP_001345555.1 | phage portal protein | - |
| RG33_RS25340 () | 4890067..4891386 | + | 1320 | WP_073488207.1 | S49 family peptidase | - |
| RG33_RS25345 () | 4891396..4891728 | + | 333 | WP_001358225.1 | head decoration protein | - |
| RG33_RS25350 () | 4891784..4892809 | + | 1026 | WP_000063254.1 | major capsid protein | - |
| RG33_RS25355 () | 4892851..4893246 | + | 396 | WP_073488203.1 | DNA-packaging protein FI | - |
| RG33_RS25360 () | 4893258..4893611 | + | 354 | WP_000785282.1 | head-tail joining protein | - |
| RG33_RS25365 () | 4893623..4894201 | + | 579 | WP_000975081.1 | phage tail protein | - |
| RG33_RS25370 () | 4894198..4894593 | + | 396 | WP_073488200.1 | phage minor tail U family protein | - |
| RG33_RS25375 () | 4894601..4895341 | + | 741 | WP_001543784.1 | phage tail protein | - |
| RG33_RS25380 () | 4895357..4895779 | + | 423 | WP_000479135.1 | phage minor tail protein G | - |
| RG33_RS25385 () | 4895761..4896195 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| RG33_RS25390 () | 4896188..4898767 | + | 2580 | WP_000840337.1 | phage tail tape measure protein | - |
| RG33_RS25395 () | 4898764..4899093 | + | 330 | WP_000847331.1 | phage tail protein | - |
| RG33_RS25400 () | 4899093..4899791 | + | 699 | WP_001152624.1 | phage minor tail protein L | - |
| RG33_RS25405 () | 4899797..4900540 | + | 744 | WP_000194780.1 | C40 family peptidase | - |
| RG33_RS25410 () | 4900477..4901109 | + | 633 | WP_000090891.1 | tail assembly protein | - |
| RG33_RS25415 () | 4901170..4903677 | + | 2508 | Protein_4553 | host specificity protein J | - |
| RG33_RS25430 () | 4905096..4905914 | + | 819 | Protein_4555 | DUF1983 domain-containing protein | - |
| RG33_RS25435 () | 4905981..4906580 | + | 600 | WP_001230359.1 | Outer membrane protein X | VF |
| RG33_RS25440 () | 4906645..4909950 | + | 3306 | WP_072025145.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RG33_RS25445 () | 4910002..4910124 | + | 123 | Protein_4558 | tail fiber assembly protein | - |
| RG33_RS25450 () | 4910222..4910812 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| RG33_RS25455 () | 4911129..4911362 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| RG33_RS29010 () | 4911431..4911544 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| RG33_RS25460 () | 4912148..4913431 | + | 1284 | Protein_4562 | MHS family MFS transporter YdfJ | - |
| RG33_RS25465 () | 4913520..4914980 | + | 1461 | WP_000527753.1 | mannitol dehydrogenase family protein | - |
| RG33_RS25470 () | 4915016..4915219 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| RG33_RS25475 () | 4915397..4916083 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| RG33_RS25480 () | 4916172..4916918 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| RG33_RS25490 () | 4917055..4919100 | + | 2046 | WP_001299399.1 | peptidyl-dipeptidase Dcp | - |
| RG33_RS25500 () | 4919145..4919663 | - | 519 | WP_001024561.1 | 2-oxo-tetronate isomerase | - |
| RG33_RS25505 () | 4919939..4920331 | + | 393 | WP_000671731.1 | YdeI family stress tolerance OB fold protein | - |
| RG33_RS25510 () | 4920586..4921476 | + | 891 | WP_000592826.1 | diguanylate cyclase DgcZ | - |
| RG33_RS29410 () | 4921591..4921695 | - | 105 | WP_211180496.1 | protein MgtT | - |
| RG33_RS25515 () | 4921695..4921790 | - | 96 | WP_000901367.1 | protein MgtS | - |
| RG33_RS25520 () | 4921917..4923104 | - | 1188 | WP_001054189.1 | efflux MFS transporter YdeE | - |
| RG33_RS25525 () | 4923299..4924198 | + | 900 | WP_000087216.1 | O-acetylserine/cysteine exporter | - |
| RG33_RS25530 () | 4924243..4924941 | - | 699 | WP_000577184.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|