MGE detailed information
MGE type: Prophage MGE length: 61965 bp
Accession: NZ_CP010132 Location: 3396661..3458625 Organism: Escherichia coli strain C10 Replicon: chromosome
Accession: NZ_CP010132 Location: 3396661..3458625 Organism: Escherichia coli strain C10 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG32_RS17560 () | 3393174..3393920 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| RG32_RS17565 () | 3394009..3394695 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| RG32_RS17570 () | 3394873..3395076 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| RG32_RS17575 () | 3395112..3396572 | - | 1461 | WP_000527753.1 | mannitol dehydrogenase family protein | - |
| RG32_RS17580 () | 3396661..3397944 | - | 1284 | Protein_3156 | MHS family MFS transporter YdfJ | - |
| RG32_RS26840 () | 3398548..3398661 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| RG32_RS17585 () | 3398730..3398963 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| RG32_RS17590 () | 3399280..3399870 | + | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| RG32_RS17595 () | 3399968..3400090 | - | 123 | Protein_3160 | tail fiber assembly protein | - |
| RG32_RS17600 () | 3400142..3403447 | - | 3306 | WP_072025145.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RG32_RS17605 () | 3403512..3404111 | - | 600 | WP_001230359.1 | Outer membrane protein X | VF |
| RG32_RS17610 () | 3404178..3404996 | - | 819 | Protein_3163 | DUF1983 domain-containing protein | - |
| RG32_RS17620 () | 3405073..3406250 | + | 1178 | WP_198646305.1 | IS3 family transposase ISCfr6 | Transposase |
| RG32_RS17625 () | 3406415..3408922 | - | 2508 | Protein_3165 | host specificity protein J | - |
| RG32_RS17630 () | 3408983..3409615 | - | 633 | WP_000090891.1 | tail assembly protein | - |
| RG32_RS17635 () | 3409552..3410295 | - | 744 | WP_000194780.1 | C40 family peptidase | - |
| RG32_RS17640 () | 3410301..3410999 | - | 699 | WP_001152624.1 | phage minor tail protein L | - |
| RG32_RS17645 () | 3410999..3411328 | - | 330 | WP_000847331.1 | phage tail protein | - |
| RG32_RS17650 () | 3411325..3413904 | - | 2580 | WP_000840337.1 | phage tail tape measure protein | - |
| RG32_RS17655 () | 3413897..3414331 | - | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| RG32_RS17660 () | 3414313..3414735 | - | 423 | WP_000479135.1 | phage minor tail protein G | - |
| RG32_RS17665 () | 3414751..3415491 | - | 741 | WP_001543784.1 | phage tail protein | - |
| RG32_RS17670 () | 3415499..3415894 | - | 396 | WP_073488200.1 | phage minor tail U family protein | - |
| RG32_RS17675 () | 3415891..3416469 | - | 579 | WP_000975081.1 | phage tail protein | - |
| RG32_RS17680 () | 3416481..3416834 | - | 354 | WP_000785282.1 | head-tail joining protein | - |
| RG32_RS17685 () | 3416846..3417241 | - | 396 | WP_073488203.1 | DNA-packaging protein FI | - |
| RG32_RS17690 () | 3417283..3418308 | - | 1026 | WP_000063254.1 | major capsid protein | - |
| RG32_RS17695 () | 3418364..3418696 | - | 333 | WP_001358225.1 | head decoration protein | - |
| RG32_RS17700 () | 3418706..3420025 | - | 1320 | WP_073488207.1 | S49 family peptidase | - |
| RG32_RS17705 () | 3420006..3421607 | - | 1602 | WP_001345555.1 | phage portal protein | - |
| RG32_RS17710 () | 3421604..3421810 | - | 207 | WP_000198149.1 | gpW family protein | - |
| RG32_RS17715 () | 3421807..3423732 | - | 1926 | WP_001027295.1 | phage terminase large subunit family protein | - |
| RG32_RS17720 () | 3423707..3424252 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| RG32_RS17725 () | 3424641..3424874 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| RG32_RS17730 () | 3424932..3425342 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| RG32_RS17735 () | 3425494..3425667 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| RG32_RS17740 () | 3425839..3425994 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| RG32_RS26845 () | 3426074..3426139 | - | 66 | WP_122134696.1 | hypothetical protein | - |
| RG32_RS17745 () | 3426142..3426330 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| RG32_RS17750 () | 3426341..3426553 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| RG32_RS17755 () | 3426917..3427414 | - | 498 | Protein_3192 | DUF2514 domain-containing protein | - |
| RG32_RS17760 () | 3427411..3427944 | - | 534 | WP_001092971.1 | lysozyme | - |
| RG32_RS17765 () | 3427941..3428252 | - | 312 | WP_000189915.1 | YdfR family protein | - |
| RG32_RS17770 () | 3428257..3428472 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| RG32_RS27315 () | 3428692..3428862 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| RG32_RS17775 () | 3429226..3429441 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| RG32_RS17780 () | 3429742..3429954 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| RG32_RS26850 () | 3430009..3430098 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| RG32_RS17785 () | 3430377..3431129 | - | 753 | WP_040090316.1 | antitermination protein | - |
| RG32_RS17790 () | 3431143..3432192 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| RG32_RS17795 () | 3432194..3432472 | - | 279 | WP_040090315.1 | hypothetical protein | - |
| RG32_RS17800 () | 3432539..3432790 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| RG32_RS17805 () | 3433007..3433162 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RG32_RS17810 () | 3433234..3433521 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| RG32_RS17815 () | 3433521..3433760 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| RG32_RS17820 () | 3433785..3434090 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| RG32_RS17830 () | 3434293..3434625 | + | 333 | WP_001317460.1 | FlxA-like family protein | - |
| RG32_RS17835 () | 3435062..3436403 | - | 1342 | Protein_3209 | ISNCY family transposase ISCARN112 | Transposase |
| RG32_RS27320 () | 3437172..3437459 | - | 288 | Protein_3210 | hypothetical protein | - |
| RG32_RS17860 () | 3438070..3438426 | - | 357 | WP_001374839.1 | class I SAM-dependent methyltransferase | - |
| RG32_RS17865 () | 3438423..3438845 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| RG32_RS17870 () | 3438886..3439851 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| RG32_RS17875 () | 3439832..3440353 | - | 522 | WP_000705355.1 | hypothetical protein | - |
| RG32_RS17880 () | 3440337..3440567 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| RG32_RS17885 () | 3440651..3441058 | + | 408 | WP_040089727.1 | DNA-binding transcriptional dual regulator DicA | - |
| RG32_RS17890 () | 3441225..3441380 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| RG32_RS17900 () | 3441540..3441758 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| RG32_RS17910 () | 3442326..3442514 | + | 189 | WP_000854562.1 | cell division inhibition protein DicB | - |
| RG32_RS17915 () | 3442511..3442702 | + | 192 | WP_001070257.1 | DUF1482 family protein | - |
| RG32_RS17920 () | 3442793..3445231 | + | 2439 | WP_000102147.1 | exonuclease | - |
| RG32_RS17925 () | 3445304..3445555 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| RG32_RS17930 () | 3445590..3446870 | + | 1281 | WP_000876978.1 | Putative defective protein IntQ ; Integrase | Integrase |
| RG32_RS17935 () | 3446890..3447000 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| RG32_RS17940 () | 3447058..3448077 | - | 1020 | WP_000836057.1 | Zn-dependent oxidoreductase | - |
| RG32_RS17945 () | 3448089..3449303 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| RG32_RS17955 () | 3449509..3449835 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| RG32_RS17960 () | 3449970..3450311 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| RG32_RS17965 () | 3450346..3450906 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| RG32_RS17970 () | 3450909..3451619 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| RG32_RS17975 () | 3451727..3452032 | + | 306 | WP_001307224.1 | DUF1161 domain-containing protein | - |
| RG32_RS17980 () | 3452231..3454657 | + | 2427 | WP_000041556.1 | dimethyl sulfoxide reductase subunit A | - |
| RG32_RS17985 () | 3454718..3457141 | + | 2424 | WP_001342404.1 | dimethyl sulfoxide reductase subunit A | - |
| RG32_RS17990 () | 3457152..3457769 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| RG32_RS17995 () | 3457771..3458625 | + | 855 | WP_000526490.1 | dimethyl sulfoxide reductase anchor subunit | - |
| RG32_RS18000 () | 3458668..3459282 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| RG32_RS18005 () | 3459441..3460733 | + | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| RG32_RS18010 () | 3460686..3461381 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| RG32_RS18015 () | 3461506..3462726 | - | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|