MGE detailed information
MGE type: Conjugative plasmid MGE length: 93062 bp
Accession: NZ_CP010130 Location: 1..93062 Organism: Escherichia coli strain C9 Replicon: plasmid A
Accession: NZ_CP010130 Location: 1..93062 Organism: Escherichia coli strain C9 Replicon: plasmid A
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG31_RS24285 () | 551..1132 | + | 582 | WP_000139427.1 | hypothetical protein | - |
| RG31_RS24290 () | 1312..1647 | + | 336 | WP_000628093.1 | hypothetical protein | - |
| RG31_RS24295 () | 1635..2282 | + | 648 | WP_000074712.1 | hypothetical protein | - |
| RG31_RS24300 () | 2453..2737 | - | 285 | WP_000642771.1 | hypothetical protein | - |
| RG31_RS24305 () | 2757..3890 | - | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| RG31_RS24315 () | 4409..4699 | - | 291 | WP_001229373.1 | hypothetical protein | - |
| RG31_RS24320 () | 4699..5829 | - | 1131 | WP_000542417.1 | DUF4238 domain-containing protein | - |
| RG31_RS24325 () | 5859..6962 | - | 1104 | WP_001127573.1 | nucleotide-binding protein | - |
| RG31_RS24330 () | 7291..7548 | + | 258 | WP_000371888.1 | hypothetical protein | - |
| RG31_RS24335 () | 7548..8138 | + | 591 | WP_000194568.1 | hypothetical protein | - |
| RG31_RS24340 () | 8403..9959 | + | 1557 | WP_001579759.1 | AAA family ATPase | - |
| RG31_RS24345 () | 10154..10771 | + | 618 | WP_000521604.1 | hypothetical protein | - |
| RG31_RS24350 () | 10830..11822 | - | 993 | WP_001579760.1 | hypothetical protein | - |
| RG31_RS26595 () | 11819..12034 | - | 216 | WP_000841013.1 | hypothetical protein | - |
| RG31_RS24365 () | 12732..13763 | - | 1032 | WP_000907866.1 | replication initiation protein | - |
| RG31_RS24380 () | 14736..14999 | + | 264 | WP_001387472.1 | ash family protein | - |
| RG31_RS24385 () | 14917..15204 | + | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| RG31_RS24395 () | 15646..16179 | + | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| RG31_RS24405 () | 16433..17116 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| RG31_RS24415 () | 17289..17840 | + | 552 | WP_000744644.1 | hypothetical protein | - |
| RG31_RS24420 () | 18002..18256 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| RG31_RS24425 () | 18432..18728 | + | 297 | WP_000494779.1 | hypothetical protein | - |
| RG31_RS24435 () | 19352..20419 | + | 1068 | WP_001302629.1 | hypothetical protein | VF |
| RG31_RS24440 () | 20419..20856 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| RG31_RS24445 () | 20870..22552 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| RG31_RS24450 () | 22545..23840 | + | 1296 | WP_000752772.1 | hypothetical protein | VF |
| RG31_RS24455 () | 23827..24279 | + | 453 | WP_001247334.1 | hypothetical protein | VF |
| RG31_RS24460 () | 24290..25843 | + | 1554 | WP_001579763.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| RG31_RS24465 () | 25856..26953 | + | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| RG31_RS24470 () | 26971..27585 | + | 615 | WP_000959786.1 | hypothetical protein | VF |
| RG31_RS24475 () | 27595..28155 | + | 561 | WP_000014116.1 | hypothetical protein | VF |
| RG31_RS24480 () | 28140..28796 | + | 657 | WP_001193553.1 | hypothetical protein | VF |
| RG31_RS24485 () | 28796..30166 | + | 1371 | WP_001393542.1 | hypothetical protein | VF |
| RG31_RS24490 () | 30163..30417 | + | 255 | WP_171904539.1 | prepilin | - |
| RG31_RS26600 () | 30414..30662 | - | 249 | WP_001349157.1 | hypothetical protein | - |
| RG31_RS24500 () | 30814..31968 | + | 1155 | WP_001139958.1 | integrase | - |
| RG31_RS24505 () | 32119..32943 | + | 825 | WP_001238929.1 | hypothetical protein | - |
| RG31_RS24510 () | 33029..34231 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| RG31_RS24515 () | 34291..34875 | + | 585 | WP_001579766.1 | histidine phosphatase family protein | - |
| RG31_RS24520 () | 35270..35728 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| RG31_RS24525 () | 35725..36543 | + | 819 | WP_000646097.1 | hypothetical protein | VF |
| RG31_RS24530 () | 36540..37688 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| RG31_RS24535 () | 37685..37975 | + | 291 | WP_001372180.1 | hypothetical protein | - |
| RG31_RS24540 () | 37990..38541 | + | 552 | WP_000014584.1 | Phospholipase D | VF |
| RG31_RS24545 () | 38631..42398 | + | 3768 | WP_001579768.1 | hypothetical protein | - |
| RG31_RS24550 () | 42416..42763 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| RG31_RS24555 () | 42760..43452 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| RG31_RS24560 () | 43463..44446 | + | 984 | WP_001579769.1 | hypothetical protein | VF |
| RG31_RS24565 () | 44449..45738 | + | 1290 | WP_001271997.1 | conjugal transfer protein TraO | - |
| RG31_RS24570 () | 45738..46442 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| RG31_RS24575 () | 46442..46969 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| RG31_RS24580 () | 47020..47424 | + | 405 | WP_001579770.1 | hypothetical protein | - |
| RG31_RS24585 () | 47488..47676 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| RG31_RS24590 () | 47660..48460 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| RG31_RS24595 () | 48550..51594 | + | 3045 | WP_064203881.1 | IncI1-type conjugal transfer protein TraU | - |
| RG31_RS24600 () | 51594..52208 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| RG31_RS24605 () | 52175..53377 | + | 1203 | WP_001385654.1 | IncI1-type conjugal transfer protein TraW | - |
| RG31_RS24610 () | 53406..53990 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| RG31_RS24615 () | 54087..56255 | + | 2169 | WP_000698355.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| RG31_RS24620 () | 56331..56945 | + | 615 | WP_000578649.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| RG31_RS24625 () | 57043..57252 | + | 210 | WP_001140545.1 | hemolysin expression modulator Hha | - |
| RG31_RS26605 () | 57461..57637 | + | 177 | WP_001054900.1 | hypothetical protein | - |
| - () | 59376..59427 | + | 52 | NuclAT_2 | - | - |
| - () | 59376..59427 | + | 52 | NuclAT_2 | - | - |
| - () | 59376..59427 | + | 52 | NuclAT_2 | - | - |
| - () | 59376..59427 | + | 52 | NuclAT_2 | - | - |
| RG31_RS24665 () | 59814..60065 | + | 252 | WP_001291968.1 | hypothetical protein | - |
| RG31_RS24670 () | 60137..60289 | - | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| - () | 60339..60401 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 60339..60401 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 60339..60401 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 60339..60401 | + | 63 | NuclAT_0 | - | Antitoxin Detail |
| RG31_RS24675 () | 60604..61695 | + | 1092 | WP_000426061.1 | hypothetical protein | - |
| - () | 61762..61822 | + | 61 | NuclAT_1 | - | - |
| - () | 61762..61822 | + | 61 | NuclAT_1 | - | - |
| - () | 61762..61822 | + | 61 | NuclAT_1 | - | - |
| - () | 61762..61822 | + | 61 | NuclAT_1 | - | - |
| RG31_RS24680 () | 62002..63210 | + | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| RG31_RS24685 () | 63229..64299 | + | 1071 | WP_000151582.1 | IncI1-type conjugal transfer protein TrbB | - |
| RG31_RS24690 () | 64292..66583 | + | 2292 | WP_001289276.1 | hypothetical protein | - |
| RG31_RS24695 () | 66620..69319 | - | 2700 | WP_001405892.1 | Protein TraI | Relaxase |
| RG31_RS24700 () | 69330..69662 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| RG31_RS24705 () | 69896..70231 | + | 336 | WP_000157098.1 | hypothetical protein | - |
| RG31_RS24710 () | 70317..71165 | - | 849 | WP_001077023.1 | DUF4942 domain-containing protein | - |
| RG31_RS24720 () | 71514..71711 | + | 198 | WP_001161115.1 | hypothetical protein | - |
| RG31_RS24725 () | 71745..71996 | + | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| RG31_RS25970 () | 72027..72224 | - | 198 | WP_001348086.1 | hypothetical protein | - |
| RG31_RS24730 () | 72247..73173 | - | 927 | WP_000038402.1 | Recombination-promoting nuclease RpnA | VF |
| RG31_RS24735 () | 73238..73504 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| RG31_RS24740 () | 73598..74032 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| RG31_RS24750 () | 74761..75261 | - | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| RG31_RS24760 () | 75861..76319 | - | 459 | WP_001579745.1 | hypothetical protein | - |
| RG31_RS24765 () | 76316..77035 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| RG31_RS24770 () | 77032..77466 | - | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| RG31_RS24775 () | 77521..79479 | - | 1959 | WP_001145485.1 | ParB/RepB/Spo0J family partition protein | - |
| RG31_RS24780 () | 79538..79771 | - | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| RG31_RS24785 () | 79829..80356 | - | 528 | WP_001276107.1 | single-stranded DNA-binding protein | - |
| RG31_RS26610 () | 80740..81054 | - | 315 | WP_001434357.1 | hypothetical protein | - |
| RG31_RS24805 () | 81125..81316 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| RG31_RS24810 () | 81313..81735 | - | 423 | WP_000271744.1 | DUF1380 family protein | - |
| RG31_RS24815 () | 81782..82084 | - | 303 | WP_077249901.1 | antirestriction protein | - |
| RG31_RS26615 () | 82619..83395 | - | 777 | WP_001005023.1 | hypothetical protein | - |
| RG31_RS24830 () | 83441..83875 | - | 435 | WP_000274500.1 | DUF1380 family protein | - |
| RG31_RS24835 () | 83889..84110 | - | 222 | WP_001104881.1 | hypothetical protein | - |
| RG31_RS24840 () | 84111..84794 | - | 684 | WP_000086147.1 | DNA methylase | - |
| RG31_RS24845 () | 84871..85182 | - | 312 | WP_032072582.1 | hypothetical protein | - |
| RG31_RS24850 () | 85179..86081 | - | 903 | WP_072748701.1 | DUF1281 domain-containing protein | - |
| RG31_RS24860 () | 86499..86747 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| RG31_RS24865 () | 86744..87181 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| RG31_RS24870 () | 87181..88452 | + | 1272 | WP_000457523.1 | Y-family DNA polymerase | - |
| RG31_RS24875 () | 88457..88849 | - | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| RG31_RS24880 () | 88854..89825 | - | 972 | WP_001103690.1 | hypothetical protein | - |
| RG31_RS24885 () | 90054..90698 | + | 645 | WP_000633913.1 | AAA family ATPase | - |
| RG31_RS24890 () | 90692..90967 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| RG31_RS24895 () | 91105..91887 | - | 783 | WP_001372173.1 | site-specific integrase | - |
| RG31_RS24900 () | 91955..92242 | - | 288 | Protein_104 | hypothetical protein | - |
| RG31_RS24905 () | 92306..93010 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|