MGE detailed information
MGE type: Prophage MGE length: 85758 bp
Accession: NZ_CP010129 Location: 3672167..3757924 Organism: Escherichia coli strain C9 Replicon: chromosome
Accession: NZ_CP010129 Location: 3672167..3757924 Organism: Escherichia coli strain C9 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG31_RS19655 () | 3667278..3668447 | - | 1170 | WP_001285927.1 | 2-methylcitrate synthase | - |
| RG31_RS19665 () | 3668887..3669777 | - | 891 | WP_000052206.1 | methylisocitrate lyase | - |
| RG31_RS19670 () | 3670016..3671602 | + | 1587 | WP_000941041.1 | propionate catabolism operon regulatory protein PrpR | - |
| RG31_RS19690 () | 3671739..3672433 | + | 695 | Protein_3468 | IS1 family transposase | - |
| RG31_RS19695 () | 3672536..3673225 | + | 690 | WP_000070700.1 | aldehyde dehydrogenase iron-sulfur subunit | - |
| RG31_RS19700 () | 3673222..3674178 | + | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| RG31_RS19705 () | 3674175..3676373 | + | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| RG31_RS19710 () | 3676383..3677339 | + | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| RG31_RS19715 () | 3677390..3677581 | + | 192 | Protein_3473 | LysR family transcriptional regulator | - |
| RG31_RS19720 () | 3677637..3678606 | - | 970 | Protein_3474 | IS5 family transposase IS903 | Transposase |
| RG31_RS19725 () | 3678777..3678974 | - | 198 | WP_000072422.1 | AlpA family transcriptional regulator | - |
| RG31_RS19730 () | 3679180..3679977 | - | 798 | WP_000565285.1 | hypothetical protein | - |
| RG31_RS19735 () | 3680106..3681320 | - | 1215 | WP_073511090.1 | Prophage integrase IntS ; Integrase | Integrase |
| RG31_RS19745 () | 3682106..3683137 | + | 1032 | WP_073511092.1 | IS630 family transposase ISEc33 | Transposase |
| RG31_RS19750 () | 3683310..3684458 | + | 1149 | WP_073511093.1 | acyltransferase | - |
| RG31_RS19755 () | 3684738..3685349 | - | 612 | WP_073511094.1 | tail fiber assembly protein | - |
| RG31_RS19760 () | 3685349..3686137 | - | 789 | WP_073511095.1 | phage tail protein | - |
| RG31_RS19765 () | 3686141..3686725 | - | 585 | WP_073511096.1 | YmfQ family protein | - |
| RG31_RS19770 () | 3686716..3687774 | - | 1059 | WP_073511097.1 | baseplate J/gp47 family protein | - |
| RG31_RS19775 () | 3687761..3688186 | - | 426 | WP_000424737.1 | phage GP46 family protein | - |
| RG31_RS19780 () | 3688186..3688734 | - | 549 | WP_000643722.1 | phage baseplate assembly protein V | - |
| RG31_RS19785 () | 3688734..3689813 | - | 1080 | WP_073511098.1 | baseplate protein | - |
| RG31_RS19790 () | 3689810..3691138 | - | 1329 | WP_149025920.1 | DNA circularization N-terminal domain-containing protein | - |
| RG31_RS19795 () | 3691199..3693034 | - | 1836 | WP_073511100.1 | phage tail tape measure protein | - |
| RG31_RS19805 () | 3693176..3693445 | - | 270 | WP_000661051.1 | phage tail assembly protein | - |
| RG31_RS19810 () | 3693445..3693801 | - | 357 | WP_000090998.1 | phage tail tube protein | - |
| RG31_RS19815 () | 3693801..3695297 | - | 1497 | WP_073511101.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| RG31_RS19820 () | 3695281..3695451 | - | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| RG31_RS19825 () | 3695460..3696020 | - | 561 | WP_000779294.1 | hypothetical protein | - |
| RG31_RS19830 () | 3696017..3696523 | - | 507 | WP_000224835.1 | hypothetical protein | - |
| RG31_RS19835 () | 3696498..3696908 | - | 411 | WP_000702392.1 | phage head closure protein | - |
| RG31_RS19840 () | 3696905..3697228 | - | 324 | WP_000924829.1 | head-tail connector protein | - |
| RG31_RS19845 () | 3697307..3698536 | - | 1230 | WP_000766098.1 | phage major capsid protein | - |
| RG31_RS19850 () | 3698547..3699149 | - | 603 | WP_064503058.1 | HK97 family phage prohead protease | - |
| RG31_RS19855 () | 3699142..3700368 | - | 1227 | WP_000923135.1 | phage portal protein | - |
| RG31_RS26565 () | 3700358..3700519 | - | 162 | WP_000838376.1 | hypothetical protein | - |
| RG31_RS19860 () | 3700516..3702012 | - | 1497 | WP_096859749.1 | terminase large subunit | - |
| RG31_RS19865 () | 3702246..3702740 | - | 495 | WP_000929184.1 | phage terminase small subunit P27 family | - |
| RG31_RS19870 () | 3702867..3703217 | - | 351 | WP_032257815.1 | HNH endonuclease | - |
| RG31_RS19880 () | 3703743..3704036 | + | 294 | WP_000738423.1 | increased serum survival lipoprotein Iss | - |
| RG31_RS25830 () | 3704127..3704309 | - | 183 | WP_001228695.1 | prophage lysis lipoprotein RzoD | - |
| RG31_RS19890 () | 3704526..3705002 | - | 477 | WP_001546526.1 | glycoside hydrolase family protein | - |
| RG31_RS19895 () | 3705006..3705332 | - | 327 | WP_001120497.1 | phage holin, lambda family | - |
| RG31_RS19900 () | 3705625..3705888 | + | 264 | WP_024225789.1 | hypothetical protein | - |
| RG31_RS19905 () | 3705885..3706625 | + | 741 | WP_024225790.1 | hypothetical protein | - |
| RG31_RS19910 () | 3706652..3706993 | - | 342 | WP_032141727.1 | antitermination protein | - |
| RG31_RS19915 () | 3707011..3708000 | - | 990 | WP_073511102.1 | DUF968 domain-containing protein | - |
| RG31_RS19920 () | 3708008..3708817 | - | 810 | WP_073511103.1 | KilA-N domain-containing protein | - |
| RG31_RS19925 () | 3708837..3709226 | - | 390 | WP_000767113.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RG31_RS19930 () | 3709223..3709549 | - | 327 | WP_000210171.1 | LexA family transcriptional regulator | - |
| RG31_RS19935 () | 3709546..3710199 | - | 654 | WP_001433188.1 | phage N-6-adenine-methyltransferase | - |
| RG31_RS19940 () | 3710199..3710693 | - | 495 | WP_073511104.1 | PerC family transcriptional regulator | - |
| RG31_RS19945 () | 3710690..3711631 | - | 942 | WP_000104954.1 | helix-turn-helix domain-containing protein | - |
| RG31_RS19950 () | 3711621..3711800 | - | 180 | WP_023148278.1 | DUF4222 domain-containing protein | - |
| RG31_RS19955 () | 3711976..3712527 | - | 552 | WP_000515830.1 | protein YmfL | - |
| RG31_RS19960 () | 3712571..3712771 | - | 201 | WP_000649477.1 | helix-turn-helix domain-containing protein | - |
| RG31_RS19965 () | 3712862..3713536 | + | 675 | WP_000848748.1 | LexA family transcriptional repressor | - |
| RG31_RS19970 () | 3713949..3714140 | - | 192 | WP_000159356.1 | hypothetical protein | - |
| RG31_RS26400 () | 3714254..3714564 | + | 311 | Protein_3523 | hypothetical protein | - |
| RG31_RS19985 () | 3714579..3714941 | + | 363 | WP_000135680.1 | hypothetical protein | - |
| RG31_RS19990 () | 3715007..3715831 | + | 825 | WP_073511105.1 | DUF2303 family protein | - |
| RG31_RS19995 () | 3715959..3716495 | + | 537 | WP_000008200.1 | 5'-deoxynucleotidase | - |
| RG31_RS20000 () | 3716486..3716848 | + | 363 | WP_001242749.1 | phage protein | - |
| RG31_RS20005 () | 3716848..3717153 | + | 306 | WP_021548941.1 | hypothetical protein | - |
| RG31_RS20015 () | 3717380..3718543 | + | 1164 | WP_073511106.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| RG31_RS20025 () | 3718748..3720001 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| RG31_RS20030 () | 3720013..3721116 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| RG31_RS20035 () | 3721404..3722459 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| RG31_RS20040 () | 3722498..3722899 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| RG31_RS20045 () | 3722957..3724201 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| - () | 3723617..3723697 | - | 81 | NuclAT_11 | - | - |
| - () | 3723617..3723697 | - | 81 | NuclAT_11 | - | - |
| - () | 3723617..3723697 | - | 81 | NuclAT_11 | - | - |
| - () | 3723617..3723697 | - | 81 | NuclAT_11 | - | - |
| RG31_RS20050 () | 3724293..3724751 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| RG31_RS20055 () | 3725012..3726469 | + | 1458 | WP_001293003.1 | cytosol nonspecific dipeptidase | - |
| RG31_RS20060 () | 3726526..3727047 | - | 522 | Protein_3537 | peptide chain release factor H | - |
| RG31_RS20065 () | 3727046..3727249 | - | 204 | Protein_3538 | RNA ligase RtcB family protein | - |
| RG31_RS20070 () | 3727495..3727947 | - | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
| RG31_RS20075 () | 3727957..3728355 | - | 399 | WP_001263493.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| RG31_RS20080 () | 3728358..3728651 | - | 294 | WP_000554757.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| RG31_RS20085 () | 3728703..3729758 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| RG31_RS20090 () | 3729829..3730614 | - | 786 | WP_000207549.1 | Chemotaxis protein LafU | VF |
| RG31_RS20095 () | 3730586..3732298 | + | 1713 | Protein_3544 | Flagellar biosynthesis protein FlhA | VF |
| RG31_RS20110 () | 3732514..3733011 | - | 498 | WP_000006261.1 | REP-associated tyrosine transposase RayT | - |
| RG31_RS20120 () | 3733187..3733960 | - | 774 | WP_001353765.1 | Murein DD-endopeptidase MepH | VF |
| RG31_RS20125 () | 3734146..3734406 | + | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| RG31_RS20130 () | 3734409..3734687 | + | 279 | WP_000615979.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| RG31_RS20135 () | 3734843..3735583 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| RG31_RS20140 () | 3735554..3736321 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| RG31_RS20145 () | 3736527..3737105 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| RG31_RS20150 () | 3737345..3739789 | + | 2445 | WP_072651928.1 | Acyl-coenzyme A dehydrogenase | VF |
| RG31_RS20155 () | 3739832..3740278 | - | 447 | WP_001601618.1 | Ivy family C-type lysozyme inhibitor | - |
| RG31_RS20160 () | 3740459..3741229 | + | 771 | WP_032170723.1 | 2-oxoglutaramate amidase | - |
| RG31_RS25845 () | 3741466..3742162 | - | 697 | Protein_3555 | IS1 family transposase | - |
| RG31_RS20185 () | 3742528..3743259 | - | 732 | WP_024185250.1 | DNA polymerase III subunit epsilon | - |
| RG31_RS20190 () | 3743324..3743791 | + | 468 | WP_001601045.1 | ribonuclease HI | - |
| RG31_RS20195 () | 3743788..3744510 | - | 723 | WP_001295200.1 | class I SAM-dependent methyltransferase | - |
| RG31_RS20200 () | 3744544..3745299 | + | 756 | WP_001601585.1 | hydroxyacylglutathione hydrolase | - |
| RG31_RS20205 () | 3745371..3746729 | + | 1359 | WP_073511107.1 | hypothetical protein | VF |
| RG31_RS20210 () | 3746777..3747547 | - | 771 | WP_054496244.1 | class I SAM-dependent methyltransferase | - |
| RG31_RS20215 () | 3747624..3748424 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| RG31_RS20220 () | 3748665..3749579 | + | 915 | WP_054496245.1 | HTH-type transcriptional regulator ArgP | VF |
| RG31_RS20225 () | 3749576..3750379 | - | 804 | WP_054496246.1 | 2,5-didehydrogluconate reductase DkgB | - |
| RG31_RS20255 () | 3756133..3756705 | - | 573 | WP_001140178.1 | Histidine biosynthesis bifunctional protein HisB | VF |
| RG31_RS20260 () | 3756893..3757924 | + | 1032 | WP_000593994.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| RG31_RS20265 () | 3757917..3758570 | + | 654 | WP_001294600.1 | methionine ABC transporter permease MetI | - |
| RG31_RS20270 () | 3758610..3759425 | + | 816 | WP_000874224.1 | methionine ABC transporter substrate-binding lipoprotein MetQ | - |
| RG31_RS20275 () | 3759543..3759947 | + | 405 | WP_001202329.1 | Rcs stress response system protein RcsF | - |
| RG31_RS20280 () | 3759944..3760651 | + | 708 | WP_054495609.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| RG31_RS20285 () | 3760762..3762480 | + | 1719 | WP_001260707.1 | proline--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|