MGE detailed information
MGE type: Genomic_island MGE length: 15189 bp
Accession: NZ_CP010129 Location: 2399074..2414262 Organism: Escherichia coli strain C9 Replicon: chromosome
Accession: NZ_CP010129 Location: 2399074..2414262 Organism: Escherichia coli strain C9 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG31_RS12865 () | 2399074..2399340 | + | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| RG31_RS12870 () | 2399340..2400662 | + | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| RG31_RS12880 () | 2400971..2401179 | + | 209 | Protein_2283 | helix-turn-helix transcriptional regulator | - |
| RG31_RS12885 () | 2401434..2402660 | + | 1227 | Protein_2284 | Outer membrane usher protein FimD | VF |
| RG31_RS12890 () | 2402674..2403204 | + | 531 | WP_000876763.1 | Protein FimF | VF |
| RG31_RS12895 () | 2403217..2403720 | + | 504 | WP_000825452.1 | Protein FimG | VF |
| RG31_RS12900 () | 2403779..2404693 | + | 915 | WP_000520676.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| RG31_RS12905 () | 2405027..2407306 | + | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| RG31_RS12910 () | 2407554..2407751 | + | 198 | WP_000543384.1 | two-component system connector SafA | - |
| RG31_RS12915 () | 2407826..2408587 | + | 762 | WP_000060492.1 | acid stress response transcriptional regulator YdeO | - |
| RG31_RS12920 () | 2408989..2410671 | + | 1683 | WP_001295684.1 | sulfatase | - |
| RG31_RS12925 () | 2410723..2411880 | + | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| RG31_RS26240 () | 2411846..2411968 | - | 123 | WP_120795387.1 | protein YneP | - |
| RG31_RS12930 () | 2412171..2413040 | + | 870 | Protein_2294 | ABC transporter ATP-binding protein/permease | - |
| RG31_RS12935 () | 2413055..2414262 | - | 1208 | Protein_2295 | IS4 family transposase IS10R | Transposase |
| RG31_RS12940 () | 2414368..2415048 | + | 681 | Protein_2296 | ABC transporter ATP-binding protein/permease | - |
| RG31_RS12945 () | 2415105..2416074 | - | 970 | Protein_2297 | IS5 family transposase | - |
| RG31_RS12955 () | 2416297..2418669 | + | 2373 | Protein_2298 | TonB-dependent receptor plug domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.008 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.008 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.01 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.008 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.008 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.008 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.008 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.008 |