MGE detailed information
MGE type: Prophage MGE length: 70853 bp
Accession: NZ_CP010122 Location: 1670549..1741401 Organism: Escherichia coli strain C5 Replicon: chromosome
Accession: NZ_CP010122 Location: 1670549..1741401 Organism: Escherichia coli strain C5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG28_RS08655 () | 1666496..1667776 | - | 1281 | WP_000097642.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| RG28_RS08660 () | 1667790..1669238 | - | 1449 | WP_021565382.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| RG28_RS08665 () | 1669261..1670529 | - | 1269 | WP_000271938.1 | L-2-hydroxyglutarate oxidase | - |
| RG28_RS08670 () | 1670549..1671526 | - | 978 | WP_000993087.1 | carbon starvation induced protein CsiD | - |
| RG28_RS31155 () | 1671862..1674114 | - | 2253 | Protein_1579 | hypothetical protein | - |
| RG28_RS31160 () | 1675505..1676876 | + | 1372 | Protein_1580 | DUF5507 domain-containing protein | - |
| RG28_RS08720 () | 1677339..1678501 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| RG28_RS30440 () | 1678866..1678985 | + | 120 | WP_000927517.1 | hypothetical protein | - |
| RG28_RS08740 () | 1679050..1679472 | + | 423 | Protein_1583 | Antigen 43 | VF |
| RG28_RS08755 () | 1680724..1680984 | - | 261 | WP_073520932.1 | 50S ribosome-binding GTPase | - |
| RG28_RS08760 () | 1681150..1681389 | - | 240 | WP_001367084.1 | AlpA family phage regulatory protein | - |
| RG28_RS08765 () | 1681503..1682384 | + | 882 | WP_000655916.1 | hypothetical protein | - |
| RG28_RS08770 () | 1682652..1682831 | - | 180 | WP_000925811.1 | hypothetical protein | - |
| RG28_RS08775 () | 1682818..1683564 | - | 747 | WP_044687237.1 | hypothetical protein | - |
| RG28_RS08780 () | 1683610..1687461 | - | 3852 | WP_000963924.1 | hypothetical protein | - |
| RG28_RS31775 () | 1688112..1689392 | + | 1281 | Protein_1591 | XRE family transcriptional regulator | - |
| RG28_RS31780 () | 1689423..1691675 | + | 2253 | WP_173672928.1 | hypothetical protein | - |
| RG28_RS08790 () | 1691814..1693055 | - | 1242 | WP_000113815.1 | Prophage integrase IntA ; Integrase | Integrase |
| RG28_RS08795 () | 1693420..1694592 | - | 1173 | WP_061351739.1 | Putative defective protein IntQ ; Integrase | Integrase |
| RG28_RS08805 () | 1694765..1694911 | - | 147 | WP_001030140.1 | hypothetical protein | - |
| RG28_RS08810 () | 1694915..1695157 | - | 243 | WP_000457714.1 | DUF4222 domain-containing protein | - |
| RG28_RS08815 () | 1695189..1695560 | - | 372 | WP_061351741.1 | DUF5406 family protein | - |
| RG28_RS08825 () | 1695840..1696859 | - | 1020 | WP_040080126.1 | IS110 family transposase ISEc66 | Transposase |
| RG28_RS08830 () | 1697029..1697856 | - | 828 | WP_042973948.1 | serine protease | - |
| RG28_RS08840 () | 1698219..1698800 | - | 582 | WP_061352044.1 | hypothetical protein | - |
| RG28_RS08845 () | 1699185..1699391 | - | 207 | WP_057698620.1 | hypothetical protein | - |
| RG28_RS08850 () | 1699547..1700008 | - | 462 | WP_072301616.1 | helix-turn-helix transcriptional regulator | - |
| RG28_RS08855 () | 1700154..1700843 | - | 690 | WP_057697516.1 | LexA family transcriptional regulator | - |
| RG28_RS08860 () | 1700977..1701249 | + | 273 | WP_057697517.1 | helix-turn-helix domain-containing protein | - |
| RG28_RS08865 () | 1701371..1701598 | - | 228 | WP_000132761.1 | hypothetical protein | - |
| RG28_RS08870 () | 1701687..1702007 | + | 321 | WP_000186943.1 | hypothetical protein | - |
| RG28_RS08875 () | 1702083..1702394 | + | 312 | WP_000932280.1 | hypothetical protein | - |
| RG28_RS08880 () | 1702394..1703101 | + | 708 | WP_061352046.1 | Rha family transcriptional regulator | - |
| RG28_RS08885 () | 1703121..1703297 | + | 177 | WP_001197746.1 | DUF4222 domain-containing protein | - |
| RG28_RS08890 () | 1703316..1703624 | - | 309 | WP_000147080.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| RG28_RS08895 () | 1703614..1703943 | - | 330 | WP_072301615.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RG28_RS08900 () | 1704058..1704348 | - | 291 | WP_157916595.1 | SWIM zinc finger family protein | - |
| RG28_RS08905 () | 1704433..1705299 | + | 867 | WP_171840557.1 | Rha family phage regulatory protein | - |
| RG28_RS08910 () | 1705296..1705520 | + | 225 | WP_047089426.1 | hypothetical protein | - |
| RG28_RS08915 () | 1705652..1706494 | + | 843 | WP_052773596.1 | hypothetical protein | - |
| RG28_RS08920 () | 1706505..1707383 | + | 879 | WP_000988199.1 | ATP-binding protein | - |
| RG28_RS08925 () | 1707380..1708780 | + | 1401 | WP_061351023.1 | replicative DNA helicase | - |
| RG28_RS08930 () | 1708777..1709034 | + | 258 | WP_001064803.1 | hypothetical protein | - |
| RG28_RS08935 () | 1709034..1709417 | + | 384 | WP_057780576.1 | antitermination protein | - |
| RG28_RS08940 () | 1709598..1710701 | - | 1104 | WP_057697525.1 | porin OmpC | - |
| RG28_RS08945 () | 1711212..1711409 | + | 198 | WP_000917767.1 | hypothetical protein | - |
| RG28_RS08950 () | 1711560..1712606 | + | 1047 | WP_061352042.1 | site-specific DNA-methyltransferase | - |
| RG28_RS08960 () | 1713376..1713765 | + | 390 | WP_032215181.1 | holin | - |
| RG28_RS08965 () | 1713755..1714033 | + | 279 | WP_000950579.1 | phage holin family protein | - |
| RG28_RS08970 () | 1714035..1714580 | + | 546 | WP_047088412.1 | glycoside hydrolase family 108 protein | - |
| RG28_RS08980 () | 1715027..1715236 | + | 210 | WP_073520934.1 | hypothetical protein | - |
| RG28_RS08985 () | 1715308..1715490 | + | 183 | WP_061352116.1 | hypothetical protein | - |
| RG28_RS08990 () | 1715844..1716065 | + | 222 | WP_032084561.1 | hypothetical protein | - |
| RG28_RS08995 () | 1716309..1716857 | + | 549 | WP_000867509.1 | terminase small subunit | - |
| RG28_RS09000 () | 1716829..1718745 | + | 1917 | WP_061352117.1 | phage terminase large subunit family protein | - |
| RG28_RS09005 () | 1718749..1718958 | + | 210 | WP_000640654.1 | gpW family protein | - |
| RG28_RS09010 () | 1719003..1720526 | + | 1524 | WP_050552957.1 | phage portal protein | - |
| RG28_RS09015 () | 1720516..1722132 | + | 1617 | WP_073520935.1 | S49 family peptidase | - |
| RG28_RS09020 () | 1722173..1722508 | + | 336 | WP_073520936.1 | head decoration protein | - |
| RG28_RS09025 () | 1722579..1723607 | + | 1029 | WP_000522659.1 | major capsid protein | - |
| RG28_RS09030 () | 1723658..1724038 | + | 381 | WP_032192457.1 | DNA packaging protein | - |
| RG28_RS09035 () | 1724052..1724426 | + | 375 | WP_040073331.1 | tail attachment protein | - |
| RG28_RS09040 () | 1724413..1724991 | + | 579 | WP_061351886.1 | phage tail protein | - |
| RG28_RS09045 () | 1724988..1725389 | + | 402 | WP_040073329.1 | phage minor tail U family protein | - |
| RG28_RS09050 () | 1725404..1726144 | + | 741 | WP_040073328.1 | Ig domain-containing protein | - |
| RG28_RS09055 () | 1726205..1726594 | + | 390 | WP_040073327.1 | phage minor tail protein G | - |
| RG28_RS09060 () | 1726603..1726917 | + | 315 | WP_001161001.1 | phage tail assembly protein T | - |
| RG28_RS09065 () | 1726901..1729924 | + | 3024 | WP_061351885.1 | phage tail tape measure protein | - |
| RG28_RS09070 () | 1729924..1730253 | + | 330 | WP_000402323.1 | phage tail protein | - |
| RG28_RS09075 () | 1730263..1730961 | + | 699 | WP_001152670.1 | phage minor tail protein L | - |
| RG28_RS09080 () | 1730966..1731709 | + | 744 | WP_061351884.1 | C40 family peptidase | - |
| RG28_RS09085 () | 1731607..1732254 | + | 648 | WP_047656448.1 | tail assembly protein | - |
| RG28_RS09090 () | 1732315..1735713 | + | 3399 | WP_061351883.1 | host specificity protein J | - |
| RG28_RS09095 () | 1735775..1736395 | + | 621 | WP_040073323.1 | Attachment invasion locus protein | VF |
| RG28_RS09100 () | 1736460..1738784 | + | 2325 | WP_072301589.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RG28_RS09105 () | 1738784..1739365 | + | 582 | WP_061351882.1 | tail fiber assembly protein | - |
| RG28_RS09110 () | 1739406..1740830 | + | 1425 | WP_073521232.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RG28_RS09115 () | 1740838..1741401 | + | 564 | WP_061351881.1 | DUF4376 domain-containing protein | - |
| RG28_RS09125 () | 1742178..1742660 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| RG28_RS09130 () | 1742831..1743268 | + | 438 | WP_001341638.1 | type II toxin-antitoxin system toxin RatA | - |
| RG28_RS09135 () | 1743258..1743548 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| RG28_RS09140 () | 1743610..1743951 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| RG28_RS09145 () | 1744100..1745761 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|