MGE detailed information
MGE type: Prophage MGE length: 65368 bp
Accession: NZ_CP010119 Location: 5283142..5348509 Organism: Escherichia coli strain C3 Replicon: chromosome
Accession: NZ_CP010119 Location: 5283142..5348509 Organism: Escherichia coli strain C3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG26_RS28415 () | 5278532..5279230 | + | 699 | WP_000577184.1 | GntR family transcriptional regulator | - |
| RG26_RS28420 () | 5279275..5280174 | - | 900 | WP_000087189.1 | O-acetylserine/cysteine exporter | - |
| RG26_RS28425 () | 5280369..5281556 | + | 1188 | WP_001054189.1 | efflux MFS transporter YdeE | - |
| RG26_RS28430 () | 5281683..5281778 | + | 96 | WP_000901367.1 | protein MgtS | - |
| RG26_RS31055 () | 5281778..5281882 | + | 105 | WP_211180496.1 | protein MgtT | - |
| RG26_RS28435 () | 5281997..5282887 | - | 891 | WP_000592833.1 | diguanylate cyclase DgcZ | - |
| RG26_RS28440 () | 5283142..5283534 | - | 393 | WP_000671731.1 | YdeI family stress tolerance OB fold protein | - |
| RG26_RS28445 () | 5283810..5284328 | + | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| RG26_RS28450 () | 5284372..5286417 | - | 2046 | WP_001299003.1 | peptidyl-dipeptidase Dcp | - |
| RG26_RS28460 () | 5286554..5287300 | + | 747 | WP_000636571.1 | hypothetical protein | VF |
| RG26_RS28465 () | 5287389..5288075 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| RG26_RS28470 () | 5288253..5288456 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| RG26_RS28475 () | 5288492..5289952 | - | 1461 | WP_000527799.1 | mannitol dehydrogenase family protein | - |
| RG26_RS28480 () | 5290041..5291324 | - | 1284 | Protein_5120 | MHS family MFS transporter YdfJ | - |
| RG26_RS30640 () | 5291928..5292041 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| RG26_RS28485 () | 5292110..5292343 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| RG26_RS28490 () | 5292660..5293250 | + | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| RG26_RS28495 () | 5293348..5293923 | - | 576 | WP_000885621.1 | tail fiber assembly protein | - |
| RG26_RS28500 () | 5293923..5297276 | - | 3354 | WP_073519385.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RG26_RS28505 () | 5297341..5297940 | - | 600 | WP_069916437.1 | hypothetical protein | VF |
| RG26_RS28510 () | 5298007..5301405 | - | 3399 | WP_073519291.1 | host specificity protein J | - |
| RG26_RS28515 () | 5301465..5302112 | - | 648 | WP_000741589.1 | tail assembly protein | - |
| RG26_RS28520 () | 5302010..5302753 | - | 744 | WP_001317470.1 | C40 family peptidase | - |
| RG26_RS28525 () | 5302759..5303457 | - | 699 | WP_000884310.1 | phage minor tail protein L | - |
| RG26_RS28530 () | 5303467..5303796 | - | 330 | WP_000447253.1 | phage tail protein | - |
| RG26_RS28535 () | 5303796..5306862 | - | 3067 | Protein_5132 | phage tail tape measure protein | - |
| RG26_RS28540 () | 5306834..5307163 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| RG26_RS28545 () | 5307172..5307558 | - | 387 | WP_001341514.1 | phage minor tail protein G | - |
| RG26_RS28550 () | 5307619..5308362 | - | 744 | WP_000211132.1 | Ig domain-containing protein | - |
| RG26_RS28555 () | 5308373..5308774 | - | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| RG26_RS28560 () | 5308771..5309349 | - | 579 | WP_000677093.1 | phage tail protein | - |
| RG26_RS28565 () | 5309361..5309636 | - | 276 | WP_001283154.1 | DNA breaking-rejoining protein | - |
| RG26_RS28570 () | 5309629..5309952 | - | 324 | WP_001097039.1 | DUF2190 family protein | - |
| RG26_RS28575 () | 5310039..5312066 | - | 2028 | WP_001136588.1 | hypothetical protein | VF |
| RG26_RS28580 () | 5312011..5313519 | - | 1509 | WP_000985958.1 | phage portal protein | - |
| RG26_RS28585 () | 5313519..5313731 | - | 213 | WP_001072975.1 | hypothetical protein | - |
| RG26_RS28590 () | 5313728..5315830 | - | 2103 | WP_000934123.1 | phage terminase large subunit family protein | - |
| RG26_RS28595 () | 5315830..5316324 | - | 495 | WP_000373425.1 | DUF1441 family protein | - |
| RG26_RS28610 () | 5316887..5317093 | - | 207 | WP_001031433.1 | hypothetical protein | - |
| RG26_RS28620 () | 5317394..5317825 | + | 432 | WP_000035576.1 | DUF1398 domain-containing protein | - |
| RG26_RS28625 () | 5317977..5318150 | - | 174 | WP_001019139.1 | addiction module toxin, GnsA/GnsB family | - |
| RG26_RS28630 () | 5318322..5318477 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| RG26_RS30650 () | 5318557..5318622 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| RG26_RS28635 () | 5318625..5318813 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| RG26_RS28640 () | 5318824..5319036 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| RG26_RS28645 () | 5319398..5319895 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| RG26_RS28650 () | 5319892..5320425 | - | 534 | WP_001092971.1 | lysozyme | - |
| RG26_RS28655 () | 5320422..5320733 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| RG26_RS28660 () | 5320738..5320953 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| RG26_RS31060 () | 5321173..5321343 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| RG26_RS28665 () | 5321707..5321922 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| RG26_RS28670 () | 5322222..5322434 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| RG26_RS30655 () | 5322489..5322578 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| RG26_RS28675 () | 5322846..5323598 | - | 753 | WP_001047135.1 | antitermination protein | - |
| RG26_RS28680 () | 5323612..5324661 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| RG26_RS28685 () | 5324663..5324941 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| RG26_RS28690 () | 5325008..5325259 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| RG26_RS28695 () | 5325476..5325631 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RG26_RS28700 () | 5325703..5325990 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| RG26_RS28705 () | 5325990..5326229 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| RG26_RS28710 () | 5326254..5326559 | + | 306 | WP_071527819.1 | hypothetical protein | - |
| RG26_RS28720 () | 5326762..5327094 | + | 333 | WP_001317460.1 | FlxA-like family protein | - |
| RG26_RS28725 () | 5327531..5328871 | - | 1341 | WP_000589015.1 | ISNCY family transposase ISCARN112 | Transposase |
| RG26_RS28730 () | 5328905..5329324 | - | 420 | WP_001151196.1 | DUF977 family protein | - |
| RG26_RS28735 () | 5329365..5330330 | - | 966 | WP_000054504.1 | hypothetical protein | - |
| RG26_RS28740 () | 5330311..5330832 | - | 522 | WP_000705349.1 | hypothetical protein | - |
| RG26_RS28745 () | 5330816..5331043 | - | 228 | WP_000476993.1 | transcriptional regulator | - |
| RG26_RS28750 () | 5331121..5331528 | + | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| RG26_RS28755 () | 5331721..5331876 | + | 156 | WP_000379589.1 | DUF1391 family protein | - |
| RG26_RS28760 () | 5331878..5332453 | + | 576 | WP_000344954.1 | hypothetical protein | - |
| RG26_RS28765 () | 5332940..5333128 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| RG26_RS28770 () | 5333125..5333316 | + | 192 | WP_001083280.1 | lysis protein YdfD | - |
| RG26_RS28775 () | 5333409..5333813 | + | 405 | Protein_5179 | exonuclease VIII | - |
| RG26_RS28780 () | 5333814..5334218 | - | 405 | Protein_5180 | exonuclease VIII | - |
| RG26_RS30665 () | 5334311..5334502 | - | 192 | Protein_5181 | lysis protein YdfD | - |
| RG26_RS28790 () | 5334499..5334687 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| RG26_RS28795 () | 5335088..5335252 | + | 165 | WP_001340038.1 | hypothetical protein | - |
| RG26_RS28800 () | 5335256..5335474 | - | 219 | WP_001171943.1 | hypothetical protein | - |
| RG26_RS28810 () | 5335634..5335789 | - | 156 | WP_000379593.1 | DUF1391 family protein | - |
| RG26_RS28815 () | 5335956..5336363 | - | 408 | WP_000448563.1 | DNA-binding transcriptional dual regulator DicA | - |
| RG26_RS28820 () | 5336447..5336677 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| RG26_RS28825 () | 5336661..5337182 | + | 522 | WP_000705353.1 | hypothetical protein | - |
| RG26_RS28830 () | 5337163..5338128 | + | 966 | WP_000054501.1 | hypothetical protein | - |
| RG26_RS28835 () | 5338169..5338591 | + | 423 | WP_001151251.1 | DUF977 family protein | - |
| RG26_RS28840 () | 5338844..5339743 | + | 900 | WP_000566848.1 | SMEK domain-containing protein | - |
| RG26_RS28845 () | 5340058..5340711 | - | 654 | WP_001373963.1 | class I SAM-dependent methyltransferase | - |
| RG26_RS28850 () | 5340724..5341419 | - | 696 | WP_000892866.1 | hypothetical protein | - |
| RG26_RS28855 () | 5342162..5342317 | + | 156 | WP_000813255.1 | type I toxin-antitoxin system toxin HokD | - |
| RG26_RS28860 () | 5342535..5342798 | + | 264 | WP_000975572.1 | hypothetical protein | - |
| RG26_RS28865 () | 5342865..5343143 | + | 279 | WP_001360223.1 | hypothetical protein | - |
| RG26_RS28870 () | 5343145..5344194 | + | 1050 | WP_001265301.1 | DUF968 domain-containing protein | - |
| RG26_RS28875 () | 5344207..5344566 | + | 360 | WP_001217464.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RG26_RS28880 () | 5344563..5345252 | + | 690 | WP_001064889.1 | antiterminator | - |
| RG26_RS28905 () | 5345886..5346314 | + | 429 | Protein_5200 | tellurite resistance TerB family protein | - |
| RG26_RS28910 () | 5346311..5346566 | + | 256 | Protein_5201 | DUF3927 family protein | - |
| RG26_RS28925 () | 5346793..5348166 | + | 1374 | WP_073519386.1 | SASA family carbohydrate esterase | - |
| RG26_RS30675 () | 5348178..5348419 | - | 242 | Protein_5203 | hypothetical protein | - |
| RG26_RS28930 () | 5348396..5348491 | + | 96 | Protein_5204 | DUF1737 domain-containing protein | - |
| RG26_RS28935 () | 5348526..5348684 | - | 159 | WP_000499454.1 | DUF3927 family protein | - |
| RG26_RS28940 () | 5348770..5349512 | - | 743 | Protein_5206 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|