MGE detailed information
MGE type: Prophage MGE length: 39897 bp
Accession: NZ_CP010116 Location: 3196391..3236287 Organism: Escherichia coli strain C1 Replicon: chromosome
Accession: NZ_CP010116 Location: 3196391..3236287 Organism: Escherichia coli strain C1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RC72_RS16225 () | 3192246..3193046 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| RC72_RS16230 () | 3193059..3193910 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| RC72_RS16235 () | 3193966..3194424 | + | 459 | WP_000156255.1 | DUF986 family protein | - |
| RC72_RS16245 () | 3194853..3195419 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| RC72_RS16250 () | 3195416..3196225 | - | 810 | WP_000010120.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| RC72_RS16255 () | 3196391..3196600 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| RC72_RS16260 () | 3196613..3196756 | - | 144 | WP_001295496.1 | YobF family protein | - |
| RC72_RS16270 () | 3197426..3197713 | - | 288 | WP_001006855.1 | YebO family protein | - |
| RC72_RS16275 () | 3197788..3197931 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| RC72_RS16280 () | 3198090..3198329 | + | 240 | WP_001211011.1 | hypothetical protein | - |
| RC72_RS16285 () | 3198473..3199264 | - | 792 | WP_001262182.1 | DNA-binding transcriptional regulator KdgR | - |
| RC72_RS16290 () | 3199441..3200814 | + | 1374 | WP_001328842.1 | MFS transporter | - |
| RC72_RS16295 () | 3200860..3201741 | - | 882 | WP_000984517.1 | protease HtpX | - |
| RC72_RS16300 () | 3201933..3203981 | - | 2049 | WP_001055785.1 | carboxy terminal-processing peptidase | - |
| RC72_RS16305 () | 3204001..3204699 | - | 699 | WP_001595843.1 | RNA chaperone ProQ | - |
| RC72_RS16310 () | 3204796..3205293 | - | 498 | WP_001043884.1 | L-methionine (R)-S-oxide reductase | - |
| RC72_RS16315 () | 3205423..3206706 | + | 1284 | WP_001207282.1 | membrane integrity lipid transport subunit YebS | - |
| RC72_RS16320 () | 3206675..3209308 | + | 2634 | WP_001306757.1 | hypothetical protein | VF |
| RC72_RS16325 () | 3209388..3210827 | + | 1440 | WP_049068043.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RC72_RS16330 () | 3210945..3211181 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RC72_RS16335 () | 3211286..3211477 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RC72_RS16340 () | 3211478..3212134 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - () | 3212231..3212502 | + | 272 | - | - | Antitoxin Detail |
| - () | 3212269..3212372 | - | 104 | - | - | Toxin Detail |
| RC72_RS16355 () | 3212530..3212871 | - | 342 | WP_000976472.1 | YebY family protein | - |
| RC72_RS16360 () | 3212884..3213756 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| RC72_RS16365 () | 3213760..3214134 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RC72_RS16370 () | 3214273..3214503 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RC72_RS16375 () | 3214605..3215261 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| RC72_RS16380 () | 3215285..3215947 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RC72_RS16385 () | 3215944..3218004 | - | 2061 | WP_001551233.1 | oligopeptidase B | - |
| RC72_RS16390 () | 3218161..3218586 | - | 426 | WP_000064873.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| RC72_RS16395 () | 3218643..3219812 | + | 1170 | WP_001551234.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| RC72_RS16400 () | 3219976..3220635 | - | 660 | WP_073473246.1 | tellurite resistance TerB family protein | - |
| RC72_RS16415 () | 3220962..3221318 | - | 357 | WP_001295500.1 | protein YebF | - |
| RC72_RS16420 () | 3221385..3221675 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| RC72_RS16425 () | 3221809..3222987 | + | 1179 | WP_001551236.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| RC72_RS16430 () | 3223042..3223683 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| RC72_RS16435 () | 3223720..3225531 | - | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| RC72_RS16440 () | 3225766..3227241 | - | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| RC72_RS16455 () | 3227579..3228448 | + | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| RC72_RS16460 () | 3228576..3230018 | + | 1443 | WP_000091148.1 | pyruvate kinase | - |
| RC72_RS16465 () | 3230150..3231121 | - | 972 | WP_000448381.1 | Lipid A biosynthesis myristoyltransferase | VF |
| RC72_RS16470 () | 3231241..3232563 | - | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| RC72_RS16475 () | 3232579..3233511 | - | 933 | WP_011076428.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| RC72_RS16480 () | 3233590..3234345 | + | 756 | WP_000202996.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| RC72_RS16485 () | 3234342..3235127 | + | 786 | WP_000571479.1 | hypothetical protein | VF |
| RC72_RS16490 () | 3235277..3236287 | - | 1011 | WP_000568522.1 | Holliday junction branch migration DNA helicase RuvB | - |
| RC72_RS16495 () | 3236296..3236907 | - | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| RC72_RS16500 () | 3237046..3237111 | - | 66 | WP_010723105.1 | stress response small protein YobI | - |
| RC72_RS16505 () | 3237182..3237784 | + | 603 | WP_001024929.1 | YebB family permuted papain-like enzyme | - |
| RC72_RS16510 () | 3237786..3238307 | - | 522 | WP_001551239.1 | crossover junction endodeoxyribonuclease RuvC | - |
| RC72_RS16515 () | 3238342..3239082 | - | 741 | WP_000907234.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| RC72_RS16520 () | 3239111..3239563 | - | 453 | WP_001308712.1 | dihydroneopterin triphosphate diphosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|