Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3212231..3212502 | Replicon | chromosome |
| Accession | NZ_CP010116 | ||
| Organism | Escherichia coli strain C1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3212269..3212372 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3212231..3212502 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RC72_RS16325 | 3209388..3210827 | + | 1440 | WP_049068043.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RC72_RS16330 | 3210945..3211181 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RC72_RS16335 | 3211286..3211477 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RC72_RS16340 | 3211478..3212134 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 3212231..3212502 | + | 272 | - | - | Antitoxin |
| - | 3212269..3212372 | - | 104 | - | - | Toxin |
| RC72_RS16355 | 3212530..3212871 | - | 342 | WP_000976472.1 | YebY family protein | - |
| RC72_RS16360 | 3212884..3213756 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| RC72_RS16365 | 3213760..3214134 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RC72_RS16370 | 3214273..3214503 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RC72_RS16375 | 3214605..3215261 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| RC72_RS16380 | 3215285..3215947 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3196391..3236287 | 39896 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50375 NZ_CP010116:c3212372-3212269 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50375 NZ_CP010116:3212231-3212502 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
