MGE detailed information
MGE type: Prophage MGE length: 54759 bp
Accession: NZ_CP010116 Location: 2666251..2721009 Organism: Escherichia coli strain C1 Replicon: chromosome
Accession: NZ_CP010116 Location: 2666251..2721009 Organism: Escherichia coli strain C1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RC72_RS26120 () | 2662240..2662287 | + | 48 | WP_211180494.1 | protein YnaN | - |
| RC72_RS13520 () | 2662301..2663284 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| RC72_RS13530 () | 2663762..2665135 | + | 1374 | WP_001551034.1 | ATP-dependent RNA helicase DbpA | - |
| RC72_RS13535 () | 2665264..2666199 | - | 936 | WP_001157407.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| RC72_RS13540 () | 2666251..2667486 | - | 1236 | WP_072617251.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| RC72_RS13545 () | 2667488..2667703 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| RC72_RS13550 () | 2667782..2667991 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 2667807..2667985 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2667807..2667985 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2667807..2667985 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2667807..2667985 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| RC72_RS13555 () | 2667984..2668178 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| RC72_RS13560 () | 2668234..2669043 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| RC72_RS13565 () | 2669036..2671636 | - | 2601 | WP_072617252.1 | exodeoxyribonuclease VIII | - |
| RC72_RS13570 () | 2671736..2672011 | - | 276 | WP_001372690.1 | hypothetical protein | - |
| RC72_RS13575 () | 2672086..2672256 | - | 171 | WP_065336296.1 | hypothetical protein | - |
| RC72_RS13580 () | 2672256..2672477 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| RC72_RS13585 () | 2672899..2673051 | - | 153 | WP_000379561.1 | DUF1391 family protein | - |
| RC72_RS25705 () | 2673344..2673682 | - | 339 | WP_001420344.1 | peptidase S24 | - |
| RC72_RS13600 () | 2674074..2674316 | + | 243 | WP_000747951.1 | hypothetical protein | - |
| RC72_RS13605 () | 2674300..2674725 | + | 426 | WP_000693850.1 | Rha family transcriptional regulator | - |
| RC72_RS13610 () | 2674797..2675867 | + | 1071 | WP_001262390.1 | hypothetical protein | - |
| RC72_RS13615 () | 2675908..2676330 | + | 423 | WP_001151150.1 | DUF977 family protein | - |
| RC72_RS13620 () | 2676388..2676744 | + | 357 | WP_000403785.1 | hypothetical protein | - |
| RC72_RS13625 () | 2676838..2677020 | + | 183 | WP_001224662.1 | hypothetical protein | - |
| RC72_RS25970 () | 2677013..2677189 | + | 177 | WP_000753058.1 | hypothetical protein | - |
| RC72_RS26125 () | 2677186..2677475 | + | 290 | Protein_2451 | hypothetical protein | - |
| RC72_RS13645 () | 2678167..2678322 | + | 156 | WP_000813256.1 | type I toxin-antitoxin system toxin HokD | - |
| RC72_RS13650 () | 2678781..2679059 | + | 279 | WP_001429486.1 | hypothetical protein | - |
| RC72_RS13655 () | 2679061..2680110 | + | 1050 | WP_069903893.1 | DUF968 domain-containing protein | - |
| RC72_RS13660 () | 2680123..2680479 | + | 357 | WP_069903894.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RC72_RS13665 () | 2680494..2681315 | + | 822 | WP_001545909.1 | antitermination protein | - |
| RC72_RS25710 () | 2682211..2682342 | + | 132 | WP_000562553.1 | DUF3927 family protein | - |
| RC72_RS13685 () | 2682623..2682958 | - | 336 | WP_001333560.1 | anti-adapter protein IraM | - |
| RC72_RS13690 () | 2683204..2683407 | + | 204 | WP_072147991.1 | DUF1737 domain-containing protein | - |
| RC72_RS25975 () | 2683404..2683565 | + | 162 | WP_072617254.1 | hypothetical protein | - |
| RC72_RS13700 () | 2683715..2683930 | + | 216 | WP_000372595.1 | class II holin family protein | - |
| RC72_RS13705 () | 2683935..2684279 | + | 345 | WP_000193293.1 | YdfR family protein | - |
| RC72_RS13710 () | 2684245..2684517 | - | 273 | WP_000370546.1 | hypothetical protein | - |
| RC72_RS13715 () | 2684623..2685156 | + | 534 | WP_000992105.1 | lysozyme | - |
| RC72_RS25225 () | 2685373..2685558 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| RC72_RS13725 () | 2685755..2687212 | + | 1458 | WP_001097893.1 | Trk system potassium transporter TrkG | - |
| RC72_RS13735 () | 2687350..2688138 | + | 789 | WP_001291102.1 | ParB/Srx family N-terminal domain-containing protein | - |
| RC72_RS13740 () | 2688131..2689063 | + | 933 | WP_001204032.1 | hypothetical protein | - |
| RC72_RS13745 () | 2688999..2689250 | + | 252 | WP_000613571.1 | hypothetical protein | - |
| RC72_RS13750 () | 2689254..2690348 | + | 1095 | WP_072617256.1 | terminase small subunit | - |
| RC72_RS13755 () | 2690329..2691630 | + | 1302 | WP_072617257.1 | terminase family protein | - |
| RC72_RS13760 () | 2691633..2693039 | + | 1407 | WP_000763709.1 | DUF4055 domain-containing protein | - |
| RC72_RS13765 () | 2693023..2694135 | + | 1113 | WP_001317036.1 | hypothetical protein | - |
| RC72_RS13770 () | 2694240..2695004 | + | 765 | WP_072617258.1 | hypothetical protein | - |
| RC72_RS13775 () | 2695103..2696242 | + | 1140 | WP_000918483.1 | hypothetical protein | - |
| RC72_RS25980 () | 2696285..2696461 | + | 177 | WP_000908084.1 | hypothetical protein | - |
| RC72_RS13780 () | 2696465..2696860 | + | 396 | WP_072617259.1 | protein singed | - |
| RC72_RS13785 () | 2696860..2697243 | + | 384 | WP_000524259.1 | hypothetical protein | - |
| RC72_RS13790 () | 2697244..2697624 | + | 381 | WP_072617260.1 | hypothetical protein | - |
| RC72_RS13795 () | 2697621..2698013 | + | 393 | WP_000144678.1 | hypothetical protein | - |
| RC72_RS13800 () | 2698040..2699002 | + | 963 | WP_000094292.1 | hypothetical protein | - |
| RC72_RS13805 () | 2699153..2699512 | + | 360 | WP_012565075.1 | hypothetical protein | - |
| RC72_RS13815 () | 2699986..2703219 | + | 3234 | WP_072617261.1 | phage tail tape measure protein | - |
| RC72_RS13820 () | 2703212..2703550 | + | 339 | WP_000024051.1 | phage tail protein | - |
| RC72_RS13825 () | 2703550..2704248 | + | 699 | WP_073473208.1 | phage minor tail protein L | - |
| RC72_RS13830 () | 2704254..2704997 | + | 744 | WP_073473212.1 | C40 family peptidase | - |
| RC72_RS13835 () | 2704895..2705542 | + | 648 | WP_072617264.1 | tail assembly protein | - |
| RC72_RS13840 () | 2705603..2709082 | + | 3480 | WP_072617265.1 | host specificity protein J | - |
| RC72_RS13845 () | 2709150..2709749 | + | 600 | WP_072617266.1 | hypothetical protein | VF |
| RC72_RS13850 () | 2709814..2712216 | + | 2403 | WP_077893274.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RC72_RS13855 () | 2712213..2712494 | + | 282 | WP_061158085.1 | hypothetical protein | - |
| RC72_RS13860 () | 2712504..2713193 | + | 690 | WP_072617268.1 | tail fiber domain-containing protein | - |
| RC72_RS13865 () | 2713219..2713512 | + | 294 | WP_000355609.1 | hypothetical protein | - |
| RC72_RS13870 () | 2713532..2713651 | + | 120 | Protein_2494 | tail fiber assembly protein | - |
| RC72_RS25715 () | 2713725..2715054 | - | 1330 | Protein_2495 | GGDEF domain-containing protein | - |
| RC72_RS26130 () | 2715298..2715414 | + | 117 | Protein_2496 | capsid protein | - |
| RC72_RS13895 () | 2715418..2716008 | + | 591 | WP_012477564.1 | plasmid pRiA4b ORF-3 family protein | - |
| RC72_RS13900 () | 2716145..2716717 | + | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| RC72_RS13905 () | 2716754..2718145 | + | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| RC72_RS13910 () | 2718178..2718606 | + | 429 | Protein_2500 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| RC72_RS13915 () | 2718925..2719581 | - | 657 | WP_001516695.1 | hypothetical protein | ARG |
| RC72_RS13925 () | 2719976..2720991 | + | 1016 | Protein_2502 | IS3 family transposase ISEc36 | Transposase |
| RC72_RS13930 () | 2721034..2723829 | - | 2796 | Protein_2503 | Tn3-like element Tn3 family transposase | - |
| RC72_RS13935 () | 2723843..2724175 | + | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| RC72_RS13940 () | 2724222..2725097 | - | 876 | WP_000239590.1 | class A extended-spectrum beta-lactamase CTX-M-15 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|