MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 68552 bp
Accession: NZ_CP009990 Location: 1..68552 Organism: Yersinia pestis strain Nicholisk 41 Replicon: plasmid 2
Accession: NZ_CP009990 Location: 1..68552 Organism: Yersinia pestis strain Nicholisk 41 Replicon: plasmid 2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH63_RS00625 () | 163..462 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CH63_RS00630 () | 455..697 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| CH63_RS23615 () | 863..1155 | - | 293 | Protein_3 | IS6 family transposase ISEas1 | Transposase |
| CH63_RS24745 () | 1241..1414 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| CH63_RS24620 () | 1563..1799 | - | 237 | WP_154020274.1 | hypothetical protein | - |
| CH63_RS00640 () | 1959..2924 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CH63_RS00645 () | 2921..4087 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| CH63_RS24050 () | 4847..5992 | - | 1146 | Protein_8 | IS3 family transposase | - |
| CH63_RS00665 () | 6099..6728 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| CH63_RS23625 () | 6874..7167 | - | 294 | Protein_10 | IS3 family transposase | - |
| CH63_RS00670 () | 7326..7874 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| CH63_RS00675 () | 8374..9342 | + | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| CH63_RS00680 () | 9342..9740 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| CH63_RS22130 () | 10146..10427 | + | 282 | Protein_14 | DDE-type integrase/transposase/recombinase | - |
| CH63_RS00690 () | 10445..10864 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| CH63_RS24055 () | 11392..11610 | - | 219 | Protein_16 | IS6 family transposase | - |
| CH63_RS24060 () | 11613..11858 | + | 246 | WP_116442925.1 | transposase | - |
| CH63_RS00695 () | 11740..12057 | + | 318 | Protein_18 | IS256 family transposase ISSod4 | Transposase |
| CH63_RS00700 () | 12100..13329 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| CH63_RS00705 () | 13723..13932 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| CH63_RS23630 () | 13953..14590 | + | 638 | Protein_21 | IS6 family transposase | - |
| CH63_RS23635 () | 14690..14833 | + | 144 | Protein_22 | IS256 family transposase IS285 | Transposase |
| CH63_RS00715 () | 15270..16190 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| CH63_RS00720 () | 16209..17414 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| CH63_RS00725 () | 17392..17898 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| CH63_RS00730 () | 17911..18891 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| CH63_RS00735 () | 18893..19180 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| CH63_RS00740 () | 19222..19662 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| CH63_RS00745 () | 19659..21773 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| CH63_RS00750 () | 21760..22104 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| CH63_RS00755 () | 22101..22469 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| CH63_RS00760 () | 22466..22837 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| CH63_RS00765 () | 22824..23102 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| CH63_RS00770 () | 23083..23964 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| CH63_RS00775 () | 24162..25481 | + | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| CH63_RS00780 () | 25478..25942 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| CH63_RS00785 () | 25942..27309 | + | 1368 | WP_002212950.1 | hypothetical protein | VF |
| CH63_RS00790 () | 27306..28229 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| CH63_RS00795 () | 28226..28879 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| CH63_RS00800 () | 28881..29147 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| CH63_RS00805 () | 29144..29929 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| CH63_RS00810 () | 29929..30993 | + | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| CH63_RS00815 () | 31569..31964 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| CH63_RS00820 () | 32088..32903 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| CH63_RS00825 () | 32982..33080 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| CH63_RS00830 () | 33306..33719 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| CH63_RS00835 () | 33725..35547 | + | 1823 | Protein_47 | Yop proteins translocation protein C | VF |
| CH63_RS00840 () | 35544..36803 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| CH63_RS00845 () | 36800..37000 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| CH63_RS00850 () | 37001..37264 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| CH63_RS00855 () | 37266..37613 | + | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| CH63_RS00860 () | 37610..38107 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| CH63_RS00865 () | 38108..38455 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| CH63_RS00870 () | 38462..39196 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| CH63_RS00875 () | 39196..39825 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| CH63_RS00880 () | 39771..40436 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| CH63_RS00885 () | 40661..41008 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| CH63_RS23640 () | 41556..42585 | + | 1030 | Protein_58 | IS3 family transposase | - |
| CH63_RS22160 () | 42604..42876 | + | 273 | Protein_59 | transposase | - |
| CH63_RS00905 () | 43097..44503 | - | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| CH63_RS00910 () | 44786..45019 | - | 234 | Protein_61 | transposase domain-containing protein | - |
| CH63_RS00915 () | 45022..45600 | + | 579 | Protein_62 | IS3 family transposase ISYpe1 | Transposase |
| CH63_RS00920 () | 46186..47052 | - | 867 | WP_002225474.1 | Effector protein YopJ | VF |
| CH63_RS00925 () | 47448..49645 | - | 2198 | Protein_64 | Protein kinase YpkA | VF |
| CH63_RS00930 () | 49653..50102 | - | 450 | WP_002229809.1 | hypothetical protein | VF |
| CH63_RS23645 () | 50358..50670 | - | 313 | Protein_66 | IS3 family transposase ISKpn37 | Transposase |
| CH63_RS22175 () | 50848..51087 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| CH63_RS00940 () | 52260..53138 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| CH63_RS00945 () | 53119..53193 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| CH63_RS00950 () | 53435..53689 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| CH63_RS00955 () | 53827..54075 | - | 249 | WP_002233137.1 | Phospholipase D | VF |
| CH63_RS22185 () | 54201..54509 | + | 309 | Protein_72 | DDE-type integrase/transposase/recombinase | - |
| CH63_RS24075 () | 54492..54899 | - | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| CH63_RS00965 () | 54923..55240 | - | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| CH63_RS00970 () | 55412..55870 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| CH63_RS00975 () | 55939..56208 | + | 270 | WP_042469136.1 | transposase | - |
| CH63_RS24750 () | 56306..56464 | - | 159 | Protein_77 | EamA family transporter | - |
| CH63_RS22195 () | 56534..57837 | - | 1304 | Protein_78 | Adhesin YadA | VF |
| CH63_RS00995 () | 58437..58787 | + | 351 | Protein_79 | IS3 family transposase IS1351 | Transposase |
| CH63_RS01000 () | 58820..61135 | - | 2316 | WP_014501242.1 | Tn3 family transposase ISEc63 | Transposase |
| CH63_RS01005 () | 61299..61850 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CH63_RS01010 () | 61869..62333 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| CH63_RS01015 () | 62472..62801 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| CH63_RS01025 () | 62901..64000 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| CH63_RS01030 () | 64148..64573 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| CH63_RS01035 () | 64950..65348 | - | 399 | Protein_86 | IS21 family transposase IS21 | Transposase |
| CH63_RS01040 () | 65348..66520 | - | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| CH63_RS01050 () | 66623..67267 | + | 645 | Protein_88 | IS3 family transposase ISYen3 | Transposase |
| CH63_RS01055 () | 67330..67722 | - | 393 | WP_002213403.1 | YopE regulator | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|