MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 171312 bp
Accession: NZ_CP009935 Location: 402952..574263 Organism: Yersinia pestis Angola Replicon: chromosome
Accession: NZ_CP009935 Location: 402952..574263 Organism: Yersinia pestis Angola Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH56_RS02490 () | 398113..398694 | - | 582 | WP_012230099.1 | peptidylprolyl isomerase | - |
| CH56_RS02495 () | 398789..399010 | - | 222 | WP_002212315.1 | YheV family putative metal-binding protein | - |
| CH56_RS02500 () | 399026..400834 | - | 1809 | WP_002212314.1 | glutathione-regulated potassium-efflux system protein KefB | - |
| CH56_RS02505 () | 400838..401386 | - | 549 | WP_002215966.1 | glutathione-regulated potassium-efflux system ancillary protein KefG | - |
| CH56_RS02510 () | 401637..403559 | + | 1923 | WP_002230378.1 | ABC transporter ATP-binding protein | - |
| CH56_RS02515 () | 403694..404683 | + | 990 | WP_002212312.1 | putative glycosyltransferase EpsJ | VF |
| CH56_RS02520 () | 404776..405756 | + | 981 | WP_002212311.1 | glycosyltransferase family 9 protein | - |
| CH56_RS02525 () | 405769..406617 | - | 849 | WP_002212310.1 | taurine dioxygenase | - |
| CH56_RS02530 () | 406614..407468 | - | 855 | WP_002212309.1 | taurine ABC transporter permease TauC | - |
| CH56_RS02535 () | 407465..408232 | - | 768 | WP_002212307.1 | Taurine import ATP-binding protein TauB | VF |
| CH56_RS02540 () | 408241..409224 | - | 984 | WP_012230100.1 | taurine ABC transporter substrate-binding protein | - |
| CH56_RS02545 () | 409427..410029 | - | 603 | WP_002212303.1 | LysE family translocator | - |
| CH56_RS02550 () | 410131..411111 | + | 981 | WP_002212302.1 | hydrolase | - |
| CH56_RS02555 () | 411108..411344 | + | 237 | WP_002212301.1 | YheU family protein | - |
| CH56_RS02560 () | 411493..412362 | + | 870 | WP_002212300.1 | phosphoribulokinase | - |
| CH56_RS02565 () | 412540..412971 | - | 432 | WP_002228139.1 | DUF1240 domain-containing protein | - |
| CH56_RS02570 () | 413043..413450 | - | 408 | WP_011906133.1 | OsmC family protein | - |
| CH56_RS02575 () | 413786..414418 | + | 633 | WP_002212297.1 | cAMP-activated global transcriptional regulator CRP | - |
| CH56_RS02580 () | 414504..416624 | + | 2121 | WP_002212296.1 | FUSC family protein | - |
| CH56_RS02585 () | 416850..418067 | - | 1218 | WP_002212295.1 | aspartate aminotransferase family protein | - |
| CH56_RS02590 () | 418200..418775 | - | 576 | WP_002223842.1 | aminodeoxychorismate synthase component II | - |
| CH56_RS02595 () | 419018..420559 | - | 1542 | WP_002215686.1 | DUF853 family protein | - |
| CH56_RS02600 () | 420885..421454 | - | 570 | WP_002208878.1 | Peptidyl-prolyl cis-trans isomerase A | VF |
| CH56_RS02605 () | 421970..423290 | + | 1321 | Protein_383 | 6-phospho-beta-glucosidase | - |
| CH56_RS02610 () | 423539..424525 | + | 987 | WP_002208881.1 | LacI family transcriptional regulator | - |
| CH56_RS02615 () | 424614..426674 | - | 2061 | WP_002208882.1 | TonB-dependent copper receptor | - |
| CH56_RS02620 () | 427160..428344 | + | 1185 | WP_002215690.1 | MFS transporter TsgA | - |
| CH56_RS02625 () | 428429..429727 | - | 1299 | WP_002228747.1 | cytosine deaminase | - |
| CH56_RS02630 () | 430049..432594 | + | 2546 | Protein_388 | nitrite reductase large subunit | - |
| CH56_RS02635 () | 432591..432917 | + | 327 | WP_002208887.1 | nitrite reductase small subunit NirD | - |
| CH56_RS02640 () | 433120..433926 | + | 807 | WP_002208888.1 | nitrite transporter NirC | - |
| CH56_RS02645 () | 434014..435426 | + | 1413 | WP_002208890.1 | siroheme synthase CysG | - |
| CH56_RS02650 () | 435617..436657 | - | 1041 | WP_002208891.1 | tryptophan--tRNA ligase | - |
| CH56_RS02655 () | 436659..437357 | - | 699 | WP_002208892.1 | phosphoglycolate phosphatase | - |
| CH56_RS02660 () | 437350..438027 | - | 678 | WP_002215694.1 | Ribulose-phosphate 3-epimerase | VF |
| CH56_RS02665 () | 438330..439145 | - | 816 | WP_002208895.1 | adenine-specific DNA-methyltransferase | - |
| CH56_RS02670 () | 439229..440218 | - | 990 | WP_002208897.1 | SPOR domain-containing protein | - |
| CH56_RS02675 () | 440472..441560 | - | 1089 | WP_002208898.1 | 3-dehydroquinate synthase | - |
| CH56_RS02680 () | 441617..442138 | - | 522 | WP_002208899.1 | shikimate kinase AroK | - |
| CH56_RS02685 () | 442487..443989 | - | 1503 | WP_002208900.1 | Type IV pilus biogenesis and competence protein PilQ | VF |
| CH56_RS02695 () | 444038..444397 | - | 360 | WP_002223837.1 | DUF2531 family protein | - |
| CH56_RS02700 () | 444417..444998 | - | 582 | WP_002217890.1 | hypothetical protein | - |
| CH56_RS02705 () | 444991..445596 | - | 606 | WP_002208904.1 | PilN domain-containing protein | - |
| CH56_RS02710 () | 445596..446492 | - | 897 | WP_002208905.1 | pilus assembly protein PilM | - |
| CH56_RS02715 () | 446612..449167 | + | 2556 | WP_002208906.1 | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | - |
| CH56_RS02720 () | 449302..449847 | - | 546 | WP_002208907.1 | ADP compounds hydrolase NudE | - |
| CH56_RS02730 () | 450434..452581 | + | 2148 | WP_002208908.1 | intracellular growth attenuator family protein | - |
| CH56_RS02735 () | 452725..453405 | + | 681 | WP_002208909.1 | GMP/IMP nucleotidase | - |
| CH56_RS02740 () | 453434..453841 | + | 408 | WP_012230110.1 | ribosome-associated heat shock protein Hsp15 | - |
| CH56_RS02745 () | 454004..454885 | + | 882 | WP_002208911.1 | Hsp33 family molecular chaperone HslO | - |
| CH56_RS02750 () | 455082..456701 | + | 1620 | WP_012230111.1 | phosphoenolpyruvate carboxykinase (ATP) | - |
| CH56_RS02755 () | 456816..458168 | - | 1353 | WP_002208913.1 | two-component system sensor histidine kinase EnvZ | - |
| CH56_RS02760 () | 458165..458884 | - | 720 | WP_002208914.1 | Transcriptional regulatory protein OmpR | VF |
| CH56_RS02765 () | 459020..459492 | - | 473 | Protein_413 | transcription elongation factor GreB | - |
| CH56_RS02770 () | 460026..462401 | + | 2376 | WP_002208916.1 | RNA-binding transcriptional accessory protein | - |
| CH56_RS02780 () | 462925..463152 | + | 228 | WP_002208918.1 | Fe(2+) transport protein A | VF |
| CH56_RS02785 () | 463244..465559 | + | 2316 | WP_002208919.1 | Fe(2+) transporter FeoB | VF |
| CH56_RS02790 () | 465886..466155 | - | 270 | WP_002208921.1 | DUF1471 domain-containing protein | - |
| CH56_RS02795 () | 466325..467101 | - | 777 | WP_002208922.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| CH56_RS02800 () | 467188..467889 | + | 702 | WP_002208923.1 | DNA utilization protein GntX | - |
| CH56_RS02805 () | 467949..468524 | + | 576 | WP_002208924.1 | Fe-S biogenesis protein NfuA | - |
| CH56_RS24370 () | 468853..470949 | - | 2097 | WP_012230116.1 | 4-alpha-glucanotransferase | - |
| CH56_RS24375 () | 470962..473034 | - | 2073 | WP_193334354.1 | maltodextrin phosphorylase | - |
| CH56_RS02820 () | 473016..473366 | - | 351 | WP_002215922.1 | hypothetical protein | - |
| CH56_RS02825 () | 473684..476394 | + | 2711 | Protein_424 | HTH-type transcriptional regulator MalT | - |
| CH56_RS02830 () | 476769..477098 | + | 330 | WP_002218928.1 | thiosulfate sulfurtransferase GlpE | - |
| CH56_RS02835 () | 477116..477952 | + | 837 | WP_002216348.1 | rhomboid family intramembrane serine protease GlpG | - |
| CH56_RS02840 () | 477987..478745 | + | 759 | WP_002208930.1 | DeoR/GlpR family transcriptional regulator | - |
| CH56_RS24380 () | 478938..480292 | + | 1355 | WP_100067904.1 | IS3 family transposase IS1661 | Transposase |
| CH56_RS02855 () | 480654..481883 | + | 1230 | WP_002215753.1 | MFS transporter | - |
| CH56_RS02860 () | 482032..482235 | - | 204 | WP_002209605.1 | hypothetical protein | - |
| CH56_RS25150 () | 482356..482514 | + | 159 | WP_002215752.1 | hypothetical protein | - |
| CH56_RS02870 () | 482593..483174 | + | 582 | WP_002215751.1 | DUF4225 domain-containing protein | - |
| CH56_RS02875 () | 483188..483520 | - | 333 | WP_002215750.1 | hypothetical protein | - |
| CH56_RS02880 () | 483788..484189 | + | 402 | Protein_434 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CH56_RS02885 () | 484280..486232 | - | 1953 | Protein_435 | Selenocysteine-specific elongation factor | VF |
| CH56_RS02890 () | 486229..487617 | - | 1389 | WP_012230118.1 | L-seryl-tRNA(Sec) selenium transferase | - |
| CH56_RS02895 () | 487801..488730 | - | 930 | WP_002209609.1 | formate dehydrogenase accessory protein FdhE | - |
| CH56_RS02900 () | 488730..489404 | - | 675 | WP_002209610.1 | formate dehydrogenase cytochrome b556 subunit | - |
| CH56_RS02905 () | 489401..490372 | - | 972 | WP_002209611.1 | formate dehydrogenase subunit beta | - |
| CH56_RS02910 () | 490385..493432 | - | 3048 | WP_002228725.1 | formate dehydrogenase-N subunit alpha | - |
| CH56_RS02920 () | 493629..494453 | + | 825 | WP_002209612.1 | formate dehydrogenase accessory sulfurtransferase FdhD | - |
| CH56_RS02925 () | 494889..495512 | + | 624 | WP_002209614.1 | Superoxide dismutase [Mn] | VF |
| CH56_RS02930 () | 495856..497805 | + | 1950 | WP_002209615.1 | Methyl-accepting chemotaxis protein III | VF |
| CH56_RS02935 () | 497995..498327 | + | 333 | WP_002217114.1 | hypothetical protein | - |
| CH56_RS02940 () | 498859..499335 | + | 477 | WP_002209617.1 | DM13 domain-containing protein | - |
| CH56_RS02945 () | 499504..499860 | - | 357 | WP_002209618.1 | YibL family ribosome-associated protein | - |
| CH56_RS02950 () | 500109..500663 | - | 555 | WP_002209619.1 | MltR family transcriptional regulator | - |
| CH56_RS02955 () | 500870..502033 | - | 1164 | WP_002209620.1 | mannitol-1-phosphate 5-dehydrogenase | - |
| CH56_RS02960 () | 502170..504101 | - | 1932 | WP_002209621.1 | PTS mannitol transporter subunit IICBA | - |
| CH56_RS02965 () | 504751..505470 | - | 720 | WP_002209622.1 | DUF3053 domain-containing protein | - |
| CH56_RS24385 () | 505565..505795 | - | 231 | WP_012303322.1 | hypothetical protein | - |
| CH56_RS02970 () | 505943..508012 | - | 2070 | WP_002209623.1 | glycine--tRNA ligase subunit beta | - |
| CH56_RS02975 () | 508022..508936 | - | 915 | WP_002209624.1 | glycine--tRNA ligase subunit alpha | - |
| CH56_RS02980 () | 509264..509836 | + | 573 | WP_002209626.1 | DNA-3-methyladenine glycosylase I | - |
| CH56_RS02985 () | 509833..510288 | + | 456 | WP_002209627.1 | N-acetyltransferase | - |
| CH56_RS02990 () | 510646..511305 | + | 660 | WP_002209628.1 | putative lipoprotein YiaD | VF |
| CH56_RS02995 () | 511436..512080 | - | 645 | WP_002209629.1 | transcriptional regulator | - |
| CH56_RS03000 () | 512580..513560 | + | 981 | WP_002209630.1 | glyoxylate/hydroxypyruvate reductase GhrB | - |
| CH56_RS03005 () | 513830..515893 | + | 2064 | WP_012230123.1 | alpha-amylase | - |
| CH56_RS03010 () | 516308..516751 | + | 444 | WP_002209632.1 | hypothetical protein | - |
| CH56_RS03015 () | 517206..518471 | + | 1266 | WP_002228155.1 | valine--pyruvate transaminase | - |
| CH56_RS03020 () | 518584..520242 | - | 1659 | WP_002209634.1 | putative transporter | - |
| CH56_RS03025 () | 520615..521079 | - | 465 | WP_002209635.1 | heat shock chaperone IbpB | - |
| CH56_RS03030 () | 521360..521773 | - | 414 | WP_002209636.1 | heat shock chaperone IbpA | - |
| CH56_RS03035 () | 522141..522479 | + | 339 | WP_002209637.1 | YceK/YidQ family lipoprotein | - |
| CH56_RS24390 () | 522519..523134 | - | 616 | Protein_466 | PD40 domain-containing protein | - |
| CH56_RS03050 () | 523342..524304 | + | 963 | WP_002209638.1 | threonine/serine dehydratase | - |
| CH56_RS03055 () | 524298..524981 | + | 684 | Protein_468 | ornithine cyclodeaminase family protein | - |
| CH56_RS03060 () | 525068..526090 | + | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| CH56_RS03065 () | 526090..526869 | + | 780 | WP_001297096.1 | IS21 family transposase IS100kyp | Transposase |
| CH56_RS03070 () | 526920..527210 | + | 291 | Protein_471 | ornithine cyclodeaminase family protein | - |
| CH56_RS24400 () | 527409..528761 | + | 1353 | Protein_472 | IS3-like element IS1661 family transposase | - |
| CH56_RS03090 () | 528923..529807 | - | 885 | WP_002208933.1 | methylenetetrahydrofolate reductase | - |
| CH56_RS03095 () | 530040..532475 | - | 2436 | WP_002208934.1 | bifunctional aspartate kinase/homoserine dehydrogenase II | - |
| CH56_RS03100 () | 532478..533638 | - | 1161 | WP_012230127.1 | cystathionine gamma-synthase | - |
| CH56_RS03105 () | 534016..534333 | + | 318 | WP_002208935.1 | met regulon transcriptional regulator MetJ | - |
| CH56_RS03115 () | 534682..535137 | + | 456 | WP_002208936.1 | YiaA/YiaB family protein | - |
| CH56_RS03120 () | 535743..536201 | - | 459 | WP_042666681.1 | IS200-IS605 family transposase IS200G | Transposase |
| CH56_RS03130 () | 536390..536605 | - | 216 | WP_002216737.1 | 50S ribosomal protein L31 | - |
| CH56_RS03135 () | 536858..539056 | + | 2199 | WP_012230129.1 | primosomal protein N' | - |
| CH56_RS03145 () | 539409..539756 | + | 348 | Protein_481 | HTH-type transcriptional repressor CytR | VF |
| CH56_RS03150 () | 539900..540358 | + | 459 | WP_042666681.1 | IS200-IS605 family transposase IS200G | Transposase |
| CH56_RS03155 () | 540699..541715 | + | 1017 | WP_002209964.1 | erythrose-4-phosphate dehydrogenase | - |
| CH56_RS03160 () | 541824..542987 | + | 1164 | WP_002209963.1 | phosphoglycerate kinase | - |
| CH56_RS03165 () | 543107..544186 | + | 1080 | WP_002209962.1 | class II fructose-bisphosphate aldolase | - |
| CH56_RS24410 () | 544231..544299 | - | 69 | Protein_486 | gluconate 5-dehydrogenase | - |
| CH56_RS03175 () | 544624..545493 | + | 870 | WP_002209961.1 | small-conductance mechanosensitive channel MscS | - |
| CH56_RS03180 () | 545756..546373 | + | 618 | WP_002209960.1 | arginine exporter ArgO | - |
| CH56_RS03185 () | 546563..547342 | + | 780 | WP_002209959.1 | oxidative stress defense protein | - |
| CH56_RS03190 () | 547353..548261 | - | 909 | WP_002209958.1 | LysR family transcriptional regulator ArgP | - |
| CH56_RS03195 () | 548603..549259 | + | 657 | WP_002209957.1 | ribose-5-phosphate isomerase RpiA | - |
| CH56_RS03200 () | 549566..550807 | + | 1242 | WP_002209956.1 | phosphoglycerate dehydrogenase | - |
| CH56_RS25155 () | 550820..550921 | - | 102 | WP_190984442.1 | gluconate 5-dehydrogenase | - |
| CH56_RS03205 () | 551072..551668 | - | 597 | WP_002209955.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| CH56_RS03210 () | 552032..552361 | - | 330 | WP_002209954.1 | cell division protein ZapA | - |
| CH56_RS03215 () | 552698..553276 | + | 579 | WP_002209953.1 | YecA family protein | - |
| CH56_RS03220 () | 553364..554677 | + | 1314 | WP_002209952.1 | Xaa-Pro aminopeptidase | - |
| CH56_RS03225 () | 554763..555941 | + | 1179 | WP_002209951.1 | 2-octaprenyl-6-methoxyphenyl hydroxylase | - |
| CH56_RS03230 () | 556114..557334 | + | 1221 | WP_002209950.1 | FAD-dependent 2-octaprenylphenol hydroxylase | - |
| CH56_RS03235 () | 558031..559128 | + | 1098 | WP_002209949.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| CH56_RS03240 () | 559197..559583 | + | 387 | WP_002209948.1 | glycine cleavage system protein GcvH | - |
| CH56_RS03245 () | 559795..562674 | + | 2880 | WP_002209947.1 | aminomethyl-transferring glycine dehydrogenase | - |
| CH56_RS25160 () | 562645..562782 | - | 138 | WP_155237770.1 | hypothetical protein | - |
| CH56_RS03250 () | 563052..563489 | + | 438 | WP_012230133.1 | lipocalin-like domain-containing protein | - |
| CH56_RS22545 () | 563505..563600 | + | 96 | Protein_505 | SDR family NAD(P)-dependent oxidoreductase | - |
| CH56_RS03260 () | 564550..566675 | + | 2126 | Protein_506 | Autotransporter adhesin EhaG | VF |
| CH56_RS03265 () | 566779..567883 | + | 1105 | Protein_507 | hypothetical protein | - |
| CH56_RS03270 () | 568085..568786 | + | 702 | WP_002209942.1 | hypothetical protein | VF |
| CH56_RS03275 () | 569044..569541 | + | 498 | WP_002209941.1 | DUF2165 family protein | - |
| CH56_RS03280 () | 569614..570606 | - | 993 | WP_002209940.1 | tRNA-modifying protein YgfZ | - |
| CH56_RS03285 () | 570923..571189 | + | 267 | WP_002209939.1 | FAD assembly factor SdhE | Antitoxin Detail |
| CH56_RS03290 () | 571170..571595 | + | 426 | WP_002215144.1 | protein YgfX | Toxin Detail |
| CH56_RS03295 () | 571595..572293 | + | 699 | WP_012230137.1 | Transcriptional regulatory protein CreB | VF |
| CH56_RS03300 () | 572304..573722 | + | 1419 | WP_002209936.1 | Sensor protein CreC | VF |
| CH56_RS03305 () | 573822..575279 | + | 1458 | WP_002220113.1 | cell envelope integrity protein CreD | - |
| CH56_RS03310 () | 575369..575887 | - | 519 | WP_002209934.1 | flavodoxin FldB | - |
| CH56_RS03315 () | 575994..576893 | + | 900 | WP_002209933.1 | site-specific tyrosine recombinase XerD | - |
| CH56_RS03320 () | 576924..577640 | + | 717 | WP_002209932.1 | bifunctional protein-disulfide isomerase/oxidoreductase DsbC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|