MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70290 bp
Accession: NZ_CP009905 Location: 1..70290 Organism: Yersinia pestis Antiqua Replicon: plasmid pCD
Accession: NZ_CP009905 Location: 1..70290 Organism: Yersinia pestis Antiqua Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH58_RS00605 () | 166..560 | + | 395 | Protein_0 | hypothetical protein | VF |
| CH58_RS00610 () | 684..1498 | + | 815 | Protein_1 | Virulence regulon transcriptional activator VirF | VF |
| CH58_RS00615 () | 1577..1675 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| CH58_RS00620 () | 1901..2314 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| CH58_RS00625 () | 2320..4143 | + | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| CH58_RS00630 () | 4140..5399 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| CH58_RS00635 () | 5396..5596 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| CH58_RS00640 () | 5597..5860 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| CH58_RS00645 () | 5862..6209 | + | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| CH58_RS00650 () | 6206..6703 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| CH58_RS00655 () | 6704..7051 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| CH58_RS00660 () | 7058..7792 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| CH58_RS00665 () | 7792..8421 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| CH58_RS00670 () | 8367..9032 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| CH58_RS00675 () | 9257..9604 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| CH58_RS00680 () | 10152..10364 | + | 213 | Protein_15 | IS3 family transposase ISEca11 | Transposase |
| CH58_RS00685 () | 10437..11216 | - | 780 | WP_001297096.1 | IS21 family transposase IS100kyp | Transposase |
| CH58_RS00695 () | 11216..12234 | - | 1019 | Protein_17 | IS21 family transposase IS100kyp | Transposase |
| CH58_RS24880 () | 12320..13136 | + | 817 | Protein_18 | transposase family protein | - |
| CH58_RS23235 () | 13155..13427 | + | 273 | Protein_19 | transposase | - |
| CH58_RS00710 () | 13648..15054 | - | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| CH58_RS00715 () | 15337..15570 | - | 234 | Protein_21 | transposase domain-containing protein | - |
| CH58_RS00720 () | 15573..16151 | + | 579 | Protein_22 | IS3 family transposase ISYpe1 | Transposase |
| CH58_RS00725 () | 16737..17602 | - | 866 | Protein_23 | Effector protein YopJ | VF |
| CH58_RS00730 () | 17998..20196 | - | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| CH58_RS00735 () | 20204..20653 | - | 450 | WP_002229809.1 | hypothetical protein | VF |
| CH58_RS24885 () | 20909..21221 | - | 313 | Protein_26 | IS3 family transposase ISKpn37 | Transposase |
| CH58_RS23250 () | 21399..21638 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| CH58_RS00745 () | 22811..23689 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| CH58_RS00750 () | 23670..23744 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| CH58_RS00755 () | 23986..24240 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| CH58_RS00760 () | 24378..24626 | - | 249 | WP_002233137.1 | Phospholipase D | VF |
| CH58_RS23260 () | 24752..25060 | + | 309 | Protein_32 | DDE-type integrase/transposase/recombinase | - |
| CH58_RS25315 () | 25043..25450 | - | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| CH58_RS00770 () | 25474..25791 | - | 318 | WP_042669180.1 | IS3 family transposase ISKpn37 | Transposase |
| CH58_RS00775 () | 25963..26421 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| CH58_RS00780 () | 26490..26708 | + | 219 | WP_144405798.1 | transposase | - |
| CH58_RS26060 () | 26856..27014 | - | 159 | Protein_37 | EamA family transporter | - |
| CH58_RS23270 () | 27084..28387 | - | 1304 | Protein_38 | Adhesin YadA | VF |
| CH58_RS00800 () | 28986..29336 | + | 351 | Protein_39 | IS3 family transposase IS1351 | Transposase |
| CH58_RS00805 () | 29369..31684 | - | 2316 | WP_002220934.1 | Tn3 family transposase ISEc63 | Transposase |
| CH58_RS00810 () | 31848..32399 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CH58_RS00815 () | 32418..32882 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| CH58_RS00820 () | 33021..33350 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| CH58_RS00830 () | 33450..34549 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| CH58_RS00835 () | 34697..35122 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| CH58_RS00840 () | 35498..35896 | - | 399 | Protein_46 | IS21 family transposase IS21 | Transposase |
| CH58_RS00845 () | 35896..37068 | - | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| CH58_RS00855 () | 37171..37815 | + | 645 | Protein_48 | IS3 family transposase ISYen3 | Transposase |
| CH58_RS00860 () | 37878..38270 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| CH58_RS00865 () | 38464..39123 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| CH58_RS00870 () | 39263..39562 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CH58_RS00875 () | 39555..39797 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| CH58_RS24895 () | 39963..40255 | - | 293 | Protein_53 | IS6 family transposase ISEas1 | Transposase |
| CH58_RS26065 () | 40340..40513 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| CH58_RS25875 () | 40662..40898 | - | 237 | WP_154020274.1 | hypothetical protein | - |
| CH58_RS00885 () | 41058..42023 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CH58_RS00890 () | 42020..43186 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| CH58_RS25325 () | 43946..45091 | - | 1146 | Protein_58 | IS3 family transposase | - |
| CH58_RS00910 () | 45198..45827 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| CH58_RS24905 () | 45973..46266 | - | 294 | Protein_60 | IS3 family transposase | - |
| CH58_RS00915 () | 46425..46973 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| CH58_RS00920 () | 47473..48441 | + | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| CH58_RS00925 () | 48441..48839 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| CH58_RS23310 () | 49245..49526 | + | 282 | Protein_64 | DDE-type integrase/transposase/recombinase | - |
| CH58_RS00935 () | 49544..49963 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| CH58_RS25330 () | 50491..50709 | - | 219 | Protein_66 | IS6 family transposase | - |
| CH58_RS25335 () | 50712..50957 | + | 246 | WP_116442925.1 | transposase | - |
| CH58_RS00940 () | 50839..51156 | + | 318 | Protein_68 | IS256 family transposase ISSod4 | Transposase |
| CH58_RS00945 () | 51199..52428 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| CH58_RS00950 () | 52822..53031 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| CH58_RS24910 () | 53052..53689 | + | 638 | Protein_71 | IS6 family transposase | - |
| CH58_RS00955 () | 54157..55077 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| CH58_RS00960 () | 55096..56301 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| CH58_RS00965 () | 56279..56785 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| CH58_RS00970 () | 56798..57778 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| CH58_RS00975 () | 57780..58067 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| CH58_RS00980 () | 58109..58549 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| CH58_RS00985 () | 58546..60660 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| CH58_RS00990 () | 60647..60991 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| CH58_RS00995 () | 60988..61356 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| CH58_RS01000 () | 61353..61724 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| CH58_RS01005 () | 61711..61989 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| CH58_RS01010 () | 61970..62851 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| CH58_RS01015 () | 63049..64368 | + | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| CH58_RS01020 () | 64365..64829 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| CH58_RS01025 () | 64829..66196 | + | 1368 | WP_002212950.1 | hypothetical protein | VF |
| CH58_RS01030 () | 66193..67116 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| CH58_RS01035 () | 67113..67766 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| CH58_RS01040 () | 67768..68034 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| CH58_RS01045 () | 68031..68816 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| CH58_RS01050 () | 68816..69880 | + | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|