MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70305 bp
Accession: NZ_CP009842 Location: 1..70305 Organism: Yersinia pestis strain Dodson Replicon: plasmid pCD
Accession: NZ_CP009842 Location: 1..70305 Organism: Yersinia pestis strain Dodson Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH61_RS00010 () | 884..1231 | - | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| CH61_RS00015 () | 1456..2121 | - | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| CH61_RS00020 () | 2067..2696 | - | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| CH61_RS00025 () | 2696..3430 | - | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| CH61_RS00030 () | 3437..3784 | - | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| CH61_RS00035 () | 3785..4282 | - | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| CH61_RS00040 () | 4279..4626 | - | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| CH61_RS00045 () | 4628..4891 | - | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| CH61_RS00050 () | 4892..5092 | - | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| CH61_RS00055 () | 5089..6348 | - | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| CH61_RS00060 () | 6345..8168 | - | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| CH61_RS00065 () | 8174..8587 | - | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| CH61_RS00070 () | 8813..8911 | - | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| CH61_RS00075 () | 8990..9805 | - | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| CH61_RS00080 () | 9929..10324 | - | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| CH61_RS00085 () | 10900..11964 | - | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| CH61_RS00090 () | 11964..12749 | - | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| CH61_RS00095 () | 12746..13012 | - | 267 | WP_002212945.1 | hypothetical protein | VF |
| CH61_RS00100 () | 13014..13667 | - | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| CH61_RS00105 () | 13664..14587 | - | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| CH61_RS00110 () | 14584..15951 | - | 1368 | WP_002212950.1 | hypothetical protein | VF |
| CH61_RS00115 () | 15951..16415 | - | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| CH61_RS00120 () | 16412..17731 | - | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| CH61_RS00125 () | 17929..18810 | + | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| CH61_RS00130 () | 18791..19069 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| CH61_RS00135 () | 19056..19427 | + | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| CH61_RS00140 () | 19424..19792 | + | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| CH61_RS00145 () | 19789..20133 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| CH61_RS00150 () | 20120..22234 | + | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| CH61_RS00155 () | 22231..22671 | + | 441 | WP_002220918.1 | hypothetical protein | VF |
| CH61_RS00160 () | 22713..23000 | + | 288 | WP_002212973.1 | hypothetical protein | VF |
| CH61_RS00165 () | 23002..23982 | + | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| CH61_RS00170 () | 23995..24501 | + | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| CH61_RS00175 () | 24479..25684 | + | 1206 | WP_002212985.1 | Protein YopB | VF |
| CH61_RS00180 () | 25703..26623 | + | 921 | WP_002212987.1 | Protein YopD | VF |
| CH61_RS23990 () | 27091..27728 | - | 638 | Protein_36 | IS6 family transposase | - |
| CH61_RS00190 () | 27749..27958 | + | 210 | WP_002229781.1 | hypothetical protein | - |
| CH61_RS00195 () | 28352..29581 | + | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| CH61_RS00200 () | 29624..29941 | - | 318 | Protein_39 | IS256 family transposase ISSod4 | Transposase |
| CH61_RS24400 () | 29823..30068 | - | 246 | WP_116442925.1 | transposase | - |
| CH61_RS22445 () | 30071..30289 | + | 219 | Protein_41 | IS6 family transposase | - |
| CH61_RS00205 () | 30817..31236 | - | 420 | WP_002222515.1 | hypothetical protein | - |
| CH61_RS22450 () | 31254..31535 | - | 282 | Protein_43 | DDE-type integrase/transposase/recombinase | - |
| CH61_RS00215 () | 31941..32339 | - | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| CH61_RS00220 () | 32339..33307 | - | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| CH61_RS00225 () | 33807..34355 | + | 549 | WP_002213007.1 | hypothetical protein | VF |
| CH61_RS23995 () | 34514..34807 | + | 294 | Protein_47 | IS3 family transposase | - |
| CH61_RS00230 () | 34953..35582 | + | 630 | WP_002229770.1 | hypothetical protein | - |
| CH61_RS24405 () | 35689..36834 | + | 1146 | Protein_49 | IS3 family transposase | - |
| CH61_RS00250 () | 37594..38760 | + | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| CH61_RS00255 () | 38757..39722 | + | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CH61_RS24970 () | 39882..40118 | + | 237 | WP_154020274.1 | hypothetical protein | - |
| CH61_RS25135 () | 40267..40440 | - | 174 | WP_002213357.1 | hypothetical protein | - |
| CH61_RS24005 () | 40526..40818 | + | 293 | Protein_54 | IS6 family transposase ISEas1 | Transposase |
| CH61_RS00265 () | 40984..41226 | + | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| CH61_RS00270 () | 41219..41518 | + | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CH61_RS00275 () | 41658..42317 | - | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| CH61_RS00280 () | 42511..42903 | + | 393 | WP_002213403.1 | YopE regulator | VF |
| CH61_RS00285 () | 42966..43610 | - | 645 | Protein_59 | IS3 family transposase ISYen3 | Transposase |
| CH61_RS24410 () | 43713..43961 | + | 249 | Protein_60 | IS21 family transposase IS21 | Transposase |
| CH61_RS00300 () | 44028..44810 | - | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| CH61_RS00305 () | 44807..45829 | - | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| CH61_RS00310 () | 45918..46844 | + | 927 | Protein_63 | IS21 family transposase IS21 | Transposase |
| CH61_RS00315 () | 46844..47242 | + | 399 | Protein_64 | IS21 family transposase IS21 | Transposase |
| CH61_RS00320 () | 47618..48043 | + | 426 | WP_002213267.1 | hypothetical protein | VF |
| CH61_RS00335 () | 49390..49719 | - | 330 | WP_002229829.1 | hypothetical protein | - |
| CH61_RS00340 () | 49858..50322 | - | 465 | WP_002224338.1 | hypothetical protein | - |
| CH61_RS00345 () | 50341..50892 | - | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CH61_RS00350 () | 51056..53371 | + | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| CH61_RS00355 () | 53404..53754 | - | 351 | Protein_71 | IS3 family transposase IS1351 | Transposase |
| CH61_RS22490 () | 54354..55657 | + | 1304 | Protein_72 | Adhesin YadA | VF |
| CH61_RS25140 () | 55727..55885 | + | 159 | Protein_73 | EamA family transporter | - |
| CH61_RS00375 () | 55983..56252 | - | 270 | WP_042469136.1 | transposase | - |
| CH61_RS00380 () | 56321..56779 | + | 459 | WP_002213246.1 | hypothetical protein | - |
| CH61_RS00385 () | 56951..57268 | + | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| CH61_RS24420 () | 57292..57699 | + | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| CH61_RS22500 () | 57682..57990 | - | 309 | Protein_78 | DDE-type integrase/transposase/recombinase | - |
| CH61_RS00395 () | 58116..58364 | + | 249 | WP_002233137.1 | Phospholipase D | VF |
| CH61_RS00400 () | 58502..58756 | + | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| CH61_RS00405 () | 58998..59072 | + | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| CH61_RS00410 () | 59053..59931 | + | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| CH61_RS22510 () | 61109..61348 | + | 240 | WP_002213291.1 | hypothetical protein | - |
| CH61_RS24020 () | 61526..61838 | + | 313 | Protein_84 | IS3 family transposase ISKpn37 | Transposase |
| CH61_RS00420 () | 62094..62543 | + | 450 | WP_002229809.1 | hypothetical protein | VF |
| CH61_RS00425 () | 62551..64749 | + | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| CH61_RS00430 () | 65145..66011 | + | 867 | WP_002213287.1 | Effector protein YopJ | VF |
| CH61_RS00435 () | 66597..67175 | - | 579 | Protein_88 | IS3 family transposase ISYpe1 | Transposase |
| CH61_RS00440 () | 67178..67411 | + | 234 | Protein_89 | transposase domain-containing protein | - |
| CH61_RS00445 () | 67694..69100 | + | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| CH61_RS22525 () | 69321..69593 | - | 273 | Protein_91 | transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|