MGE detailed information
MGE type: Prophage MGE length: 34690 bp
Accession: NZ_CP009801 Location: 4735287..4769976 Organism: Yersinia intermedia strain Y228 Replicon: chromosome
Accession: NZ_CP009801 Location: 4735287..4769976 Organism: Yersinia intermedia strain Y228 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH53_RS21165 () | 4731079..4731951 | - | 873 | WP_042569913.1 | 23S rRNA pseudouridine(2604) synthase RluF | - |
| CH53_RS21170 () | 4732274..4733533 | + | 1260 | WP_042569914.1 | mechanosensitive ion channel | - |
| CH53_RS21175 () | 4733880..4734056 | + | 177 | WP_042569915.1 | GhoT/OrtT family toxin | - |
| CH53_RS21180 () | 4734486..4734923 | + | 438 | WP_005183002.1 | universal stress protein UspF | - |
| CH53_RS23655 () | 4735033..4735149 | + | 117 | WP_161597802.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| CH53_RS21185 () | 4735443..4735922 | - | 480 | Protein_4167 | hypothetical protein | - |
| CH53_RS21190 () | 4736290..4736937 | + | 648 | WP_042569917.1 | hypothetical protein | - |
| CH53_RS23415 () | 4737195..4737380 | - | 186 | Protein_4169 | tail fiber assembly protein | - |
| CH53_RS21200 () | 4737513..4737923 | + | 411 | WP_042570189.1 | hypothetical protein | - |
| CH53_RS21205 () | 4738172..4739731 | - | 1560 | WP_042569919.1 | putative cyclic di-GMP phosphodiesterase PdeB | VF |
| CH53_RS21210 () | 4740158..4740427 | + | 270 | WP_042569920.1 | excisionase | - |
| CH53_RS22795 () | 4740435..4740557 | + | 123 | Protein_4173 | phage integrase Arm DNA-binding domain-containing protein | - |
| CH53_RS21215 () | 4740636..4741525 | - | 890 | Protein_4174 | IS110 family transposase ISCps4 | Transposase |
| CH53_RS21220 () | 4742038..4742562 | + | 525 | WP_042569921.1 | hypothetical protein | - |
| CH53_RS21225 () | 4742762..4743220 | - | 459 | WP_042569922.1 | IS200-IS605 family transposase IS1541B | Transposase |
| CH53_RS21230 () | 4743617..4744258 | + | 642 | WP_042569923.1 | hypothetical protein | - |
| CH53_RS21235 () | 4744239..4744457 | + | 219 | WP_042569924.1 | hypothetical protein | - |
| CH53_RS23420 () | 4744533..4744706 | - | 174 | Protein_4179 | tail fiber assembly protein | - |
| CH53_RS21240 () | 4744839..4745279 | + | 441 | WP_042569925.1 | hypothetical protein | - |
| CH53_RS21245 () | 4746114..4747052 | + | 939 | WP_042569926.1 | hypothetical protein | - |
| CH53_RS21965 () | 4748236..4750200 | + | 1965 | WP_050288915.1 | O-acetyltransferase OatA | VF |
| CH53_RS21970 () | 4750236..4750724 | - | 489 | WP_080774728.1 | tail fiber assembly protein | - |
| CH53_RS21265 () | 4751375..4751944 | - | 570 | Protein_4184 | hypothetical protein | - |
| CH53_RS21270 () | 4752226..4752684 | + | 459 | WP_042569928.1 | hypothetical protein | - |
| CH53_RS21275 () | 4752678..4753004 | + | 327 | WP_042569929.1 | DUF1493 family protein | - |
| CH53_RS21280 () | 4753039..4753452 | - | 414 | WP_071843570.1 | tail fiber assembly protein | - |
| CH53_RS21285 () | 4753525..4754333 | - | 809 | Protein_4188 | hypothetical protein | - |
| CH53_RS21290 () | 4754398..4757196 | - | 2799 | WP_080774729.1 | ATP-binding protein | - |
| CH53_RS23660 () | 4757193..4757735 | - | 543 | WP_050288920.1 | HNH endonuclease | - |
| CH53_RS21300 () | 4758358..4758795 | - | 438 | WP_052491303.1 | VRR-NUC domain-containing protein | - |
| CH53_RS21305 () | 4758940..4759245 | + | 306 | WP_042569932.1 | hypothetical protein | - |
| CH53_RS21310 () | 4759527..4760177 | - | 651 | WP_042569933.1 | hypothetical protein | - |
| CH53_RS23535 () | 4760346..4760495 | + | 150 | WP_154295109.1 | hypothetical protein | - |
| CH53_RS21315 () | 4760548..4760913 | + | 366 | Protein_4195 | recombinase RecT | - |
| CH53_RS23055 () | 4760986..4761222 | + | 237 | WP_042570196.1 | hypothetical protein | - |
| CH53_RS21325 () | 4761250..4761453 | + | 204 | WP_042569934.1 | hypothetical protein | - |
| CH53_RS21330 () | 4761453..4761989 | + | 537 | WP_042569935.1 | hypothetical protein | - |
| CH53_RS21335 () | 4762863..4763132 | + | 270 | WP_042569936.1 | excisionase | - |
| CH53_RS21340 () | 4763107..4764216 | + | 1110 | WP_042569937.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| - () | 4764291..4764375 | + | 85 | - | - | Antitoxin Detail |
| - () | 4764292..4764375 | - | 84 | - | - | Toxin Detail |
| CH53_RS21345 () | 4764561..4764902 | - | 342 | WP_042569938.1 | YebY family protein | - |
| CH53_RS21350 () | 4764999..4765883 | - | 885 | WP_042569939.1 | copper homeostasis membrane protein CopD | - |
| CH53_RS21355 () | 4765885..4766271 | - | 387 | WP_005183010.1 | CopC domain-containing protein YobA | - |
| CH53_RS21360 () | 4766660..4767163 | - | 504 | WP_005183013.1 | non-heme ferritin | - |
| CH53_RS21365 () | 4767554..4767784 | + | 231 | WP_005183015.1 | DNA polymerase III subunit theta | - |
| CH53_RS21370 () | 4767838..4768794 | - | 957 | WP_032905818.1 | prolyl aminopeptidase | - |
| CH53_RS21375 () | 4769317..4769976 | + | 660 | WP_005183018.1 | exodeoxyribonuclease X | - |
| CH53_RS21380 () | 4769991..4772045 | - | 2055 | WP_042569940.1 | prolyl oligopeptidase family serine peptidase | - |
| CH53_RS21385 () | 4772280..4772651 | - | 372 | WP_200889157.1 | protein YebF | - |
| CH53_RS21390 () | 4772741..4773049 | - | 309 | WP_042569942.1 | N(4)-acetylcytidine aminohydrolase | - |
| CH53_RS21395 () | 4773089..4773409 | - | 321 | WP_042569943.1 | YebG family protein | - |
| CH53_RS21400 () | 4773516..4774898 | - | 1383 | WP_005183025.1 | ATP-dependent RNA helicase DbpA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|