Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4764291..4764375 | Replicon | chromosome |
| Accession | NZ_CP009801 | ||
| Organism | Yersinia intermedia strain Y228 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4764292..4764375 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4764291..4764375 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH53_RS21310 | 4759527..4760177 | - | 651 | WP_042569933.1 | hypothetical protein | - |
| CH53_RS23535 | 4760346..4760495 | + | 150 | WP_154295109.1 | hypothetical protein | - |
| CH53_RS21315 | 4760548..4760913 | + | 366 | Protein_4195 | recombinase RecT | - |
| CH53_RS23055 | 4760986..4761222 | + | 237 | WP_042570196.1 | hypothetical protein | - |
| CH53_RS21325 | 4761250..4761453 | + | 204 | WP_042569934.1 | hypothetical protein | - |
| CH53_RS21330 | 4761453..4761989 | + | 537 | WP_042569935.1 | hypothetical protein | - |
| CH53_RS21335 | 4762863..4763132 | + | 270 | WP_042569936.1 | excisionase | - |
| CH53_RS21340 | 4763107..4764216 | + | 1110 | WP_042569937.1 | tyrosine-type recombinase/integrase | - |
| - | 4764291..4764375 | + | 85 | - | - | Antitoxin |
| - | 4764292..4764375 | - | 84 | - | - | Toxin |
| CH53_RS21345 | 4764561..4764902 | - | 342 | WP_042569938.1 | YebY family protein | - |
| CH53_RS21350 | 4764999..4765883 | - | 885 | WP_042569939.1 | copper homeostasis membrane protein CopD | - |
| CH53_RS21355 | 4765885..4766271 | - | 387 | WP_005183010.1 | CopC domain-containing protein YobA | - |
| CH53_RS21360 | 4766660..4767163 | - | 504 | WP_005183013.1 | non-heme ferritin | - |
| CH53_RS21365 | 4767554..4767784 | + | 231 | WP_005183015.1 | DNA polymerase III subunit theta | - |
| CH53_RS21370 | 4767838..4768794 | - | 957 | WP_032905818.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4735287..4769976 | 34689 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 84 bp
>T49864 NZ_CP009801:c4764375-4764292 [Yersinia intermedia]
ATTAATGCCAACTTTTAGCGCACGGCTCTGTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTT
TTTT
ATTAATGCCAACTTTTAGCGCACGGCTCTGTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCGGTCTTT
TTTT
Antitoxin
Download Length: 85 bp
>AT49864 NZ_CP009801:4764291-4764375 [Yersinia intermedia]
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGACAGAGCCGTGCGCTAAAAGTTGGCA
TTAAT
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGACAGAGCCGTGCGCTAAAAGTTGGCA
TTAAT
