MGE detailed information
MGE type: Conjugative plasmid MGE length: 51156 bp
Accession: NZ_CP009791 Location: 1..51156 Organism: Xylella fastidiosa strain U24d Replicon: plasmid pXF51ud
Accession: NZ_CP009791 Location: 1..51156 Organism: Xylella fastidiosa strain U24d Replicon: plasmid pXF51ud
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XFUD_RS12940 () | 47..301 | + | 255 | WP_042464021.1 | helix-turn-helix domain-containing protein | - |
| XFUD_RS12945 () | 435..1010 | + | 576 | WP_010895199.1 | Type IV secretion system protein virB1 | VF |
| XFUD_RS12950 () | 1012..2994 | + | 1983 | WP_010895200.1 | type I DNA topoisomerase | - |
| XFUD_RS12955 () | 3065..3328 | + | 264 | WP_010895201.1 | hypothetical protein | - |
| XFUD_RS12960 () | 3353..3709 | + | 357 | WP_069106970.1 | TrbC/VirB2 family protein | - |
| XFUD_RS12965 () | 3712..4080 | + | 369 | WP_010895203.1 | Type IV secretion system protein virB3 | VF |
| XFUD_RS12970 () | 4094..6541 | + | 2448 | WP_010895204.1 | Type IV secretion system protein virB4 | VF |
| XFUD_RS12975 () | 6538..7218 | + | 681 | WP_010895205.1 | Type IV secretion system protein virB5 | VF |
| XFUD_RS12985 () | 7551..7790 | + | 240 | WP_143707257.1 | hypothetical protein | - |
| XFUD_RS12990 () | 7794..8840 | + | 1047 | WP_010895208.1 | type IV secretion system protein | - |
| XFUD_RS13000 () | 9150..9971 | + | 822 | WP_010895209.1 | Type IV secretion system protein virB8 | VF |
| XFUD_RS13005 () | 9982..10818 | + | 837 | WP_010895210.1 | Type IV secretion system protein virB9 | VF |
| XFUD_RS13010 () | 10887..12161 | + | 1275 | WP_042464078.1 | Type IV secretion system protein virB10 | VF |
| XFUD_RS13015 () | 12158..13189 | + | 1032 | WP_042464027.1 | Type IV secretion system protein VirB11 | VF |
| XFUD_RS13020 () | 13155..15164 | + | 2010 | WP_042464030.1 | Protein VirD4 | VF |
| XFUD_RS13025 () | 15175..17466 | + | 2292 | WP_010895214.1 | hypothetical protein | - |
| XFUD_RS13030 () | 17463..17660 | + | 198 | WP_042464033.1 | hypothetical protein | - |
| XFUD_RS13035 () | 17741..17983 | + | 243 | WP_042464081.1 | hypothetical protein | - |
| XFUD_RS13045 () | 18343..18900 | - | 558 | WP_042464084.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| XFUD_RS13050 () | 18959..19243 | - | 285 | WP_143707262.1 | hypothetical protein | - |
| XFUD_RS13055 () | 19412..19831 | - | 420 | WP_010895219.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| XFUD_RS13060 () | 19831..20070 | - | 240 | WP_004085761.1 | ribbon-helix-helix domain-containing protein | - |
| XFUD_RS13065 () | 20466..20738 | + | 273 | WP_010895220.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| XFUD_RS13070 () | 20735..21220 | + | 486 | WP_010895221.1 | GNAT family N-acetyltransferase | Toxin Detail |
| XFUD_RS13075 () | 21694..21966 | - | 273 | WP_010895222.1 | DUF4190 domain-containing protein | - |
| XFUD_RS13080 () | 22031..22357 | - | 327 | WP_010895223.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| XFUD_RS13085 () | 22344..22574 | - | 231 | WP_042464041.1 | hypothetical protein | - |
| XFUD_RS13090 () | 22854..23099 | - | 246 | Protein_27 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XFUD_RS13095 () | 23143..23310 | - | 168 | WP_042464043.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XFUD_RS13100 () | 23298..23551 | - | 254 | Protein_29 | CopG family ribbon-helix-helix protein | - |
| XFUD_RS13105 () | 23811..24830 | - | 1020 | WP_010895227.1 | hypothetical protein | - |
| XFUD_RS13110 () | 25191..25946 | - | 756 | WP_010895228.1 | alpha/beta hydrolase | - |
| XFUD_RS13115 () | 26074..26238 | - | 165 | Protein_32 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| XFUD_RS13120 () | 26349..26735 | + | 387 | WP_042464090.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| XFUD_RS13125 () | 26716..27051 | + | 336 | WP_023908247.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| XFUD_RS13130 () | 27206..27805 | - | 600 | WP_010895232.1 | hypothetical protein | VF |
| XFUD_RS13135 () | 27811..29187 | - | 1377 | WP_042463301.1 | P-type conjugative transfer protein TrbL | - |
| XFUD_RS13140 () | 29209..29445 | - | 237 | WP_010894503.1 | EexN family lipoprotein | - |
| XFUD_RS13145 () | 29462..30235 | - | 774 | WP_042464049.1 | P-type conjugative transfer protein TrbJ | - |
| XFUD_RS13150 () | 30254..31657 | - | 1404 | WP_042464052.1 | TrbI/VirB10 family protein | - |
| XFUD_RS13155 () | 31663..32139 | - | 477 | WP_010895235.1 | conjugal transfer protein TrbH | - |
| XFUD_RS13160 () | 32142..33032 | - | 891 | WP_010895236.1 | P-type conjugative transfer protein TrbG | - |
| XFUD_RS13165 () | 33049..33765 | - | 717 | WP_010895237.1 | conjugal transfer protein TrbF | - |
| XFUD_RS13170 () | 33762..36131 | - | 2370 | Protein_43 | conjugal transfer protein TrbE | - |
| XFUD_RS13175 () | 36273..36593 | + | 321 | WP_004091397.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XFUD_RS13180 () | 36723..37049 | + | 327 | WP_010895238.1 | DNA-binding protein | - |
| XFUD_RS13190 () | 37585..38961 | - | 1377 | WP_052262879.1 | T-DNA border endonuclease VirD2 | Relaxase |
| XFUD_RS13195 () | 38961..39536 | - | 576 | WP_010895240.1 | hypothetical protein | Relaxase |
| XFUD_RS13200 () | 39737..40126 | + | 390 | WP_010895241.1 | hypothetical protein | - |
| XFUD_RS13205 () | 40123..40830 | + | 708 | WP_010895242.1 | hypothetical protein | - |
| XFUD_RS13210 () | 40840..41313 | + | 474 | WP_010895243.1 | hypothetical protein | - |
| XFUD_RS13215 () | 41317..41769 | + | 453 | WP_042464096.1 | virulence factor | - |
| XFUD_RS13650 () | 42004..42372 | - | 369 | WP_042464065.1 | hypothetical protein | - |
| XFUD_RS13225 () | 42609..43193 | - | 585 | WP_010895246.1 | hypothetical protein | - |
| XFUD_RS13230 () | 43281..44117 | - | 837 | WP_042464068.1 | DUF4942 domain-containing protein | - |
| XFUD_RS13240 () | 44933..45163 | - | 231 | WP_157291842.1 | transcriptional regulator | - |
| XFUD_RS13245 () | 45190..45639 | - | 450 | WP_042464071.1 | hypothetical protein | - |
| XFUD_RS13250 () | 45704..46909 | - | 1206 | WP_010895251.1 | ParB/RepB/Spo0J family partition protein | - |
| XFUD_RS13255 () | 46906..47670 | - | 765 | WP_010895252.1 | ParA family protein | - |
| XFUD_RS13260 () | 47833..48243 | - | 411 | WP_010895253.1 | single-stranded DNA-binding protein | - |
| XFUD_RS13265 () | 48317..49108 | - | 792 | WP_042464099.1 | DUF3560 domain-containing protein | - |
| XFUD_RS13275 () | 50137..50835 | - | 699 | WP_155115012.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|