MGE detailed information
MGE type: Genomic_island MGE length: 8681 bp
Accession: NZ_CP009789 Location: 1564191..1572871 Organism: Escherichia coli K-12 strain K-12 ER3413 Replicon: chromosome
Accession: NZ_CP009789 Location: 1564191..1572871 Organism: Escherichia coli K-12 strain K-12 ER3413 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ER3413_RS25290 () | 1559974..1560096 | + | 123 | WP_120795387.1 | protein YneP | - |
| ER3413_RS07745 () | 1560062..1561219 | - | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| ER3413_RS07750 () | 1561271..1562953 | - | 1683 | WP_001295684.1 | sulfatase | - |
| ER3413_RS07755 () | 1563355..1564116 | - | 762 | WP_000060495.1 | acid stress response transcriptional regulator YdeO | - |
| ER3413_RS07760 () | 1564191..1564388 | - | 198 | WP_000543384.1 | two-component system connector SafA | - |
| ER3413_RS07765 () | 1564636..1566915 | - | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| ER3413_RS07770 () | 1567249..1568163 | - | 915 | WP_000520676.1 | 5'-3' exoribonuclease | VF |
| ER3413_RS07775 () | 1568222..1568725 | - | 504 | WP_000825452.1 | Tryptophan--tRNA ligase 2 | VF |
| ER3413_RS07780 () | 1568738..1569268 | - | 531 | WP_000876763.1 | ATP-dependent RNA helicase CshA | VF |
| ER3413_RS07785 () | 1569282..1570508 | - | 1227 | Protein_1478 | Outer membrane usher protein FimD | VF |
| ER3413_RS07790 () | 1570763..1570971 | - | 209 | Protein_1479 | helix-turn-helix transcriptional regulator | - |
| ER3413_RS07795 () | 1571283..1572605 | - | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| ER3413_RS07800 () | 1572605..1572871 | - | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| ER3413_RS07805 () | 1573094..1574494 | - | 1401 | WP_001083595.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.007 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.009 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.007 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.007 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.007 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.007 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.007 |