MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 94725 bp
Accession: NZ_CP009566 Location: 1..94725 Organism: Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 Replicon: plasmid pCVM22462
Accession: NZ_CP009566 Location: 1..94725 Organism: Salmonella enterica subsp. enterica serovar Newport str. CVM 22462 Replicon: plasmid pCVM22462
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SEEN462_RS00010 () | 59..475 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| SEEN462_RS00015 () | 468..1448 | - | 981 | WP_000688519.1 | plasmid segregation protein ParM | - |
| SEEN462_RS00020 () | 1862..2170 | - | 309 | WP_000048808.1 | hypothetical protein | - |
| SEEN462_RS00025 () | 2257..2901 | - | 645 | WP_001144036.1 | ParA family protein | - |
| SEEN462_RS00030 () | 3081..3869 | - | 789 | WP_000016498.1 | site-specific integrase | - |
| SEEN462_RS00035 () | 3866..4555 | - | 690 | WP_000796232.1 | hypothetical protein | - |
| SEEN462_RS00040 () | 4548..4832 | - | 285 | WP_001331078.1 | hypothetical protein | - |
| SEEN462_RS00045 () | 5490..5747 | + | 258 | WP_000371885.1 | hypothetical protein | - |
| SEEN462_RS00050 () | 5747..6337 | + | 591 | WP_000194573.1 | hypothetical protein | - |
| SEEN462_RS00055 () | 6355..6702 | - | 348 | WP_000142441.1 | hypothetical protein | - |
| SEEN462_RS00060 () | 6831..7166 | + | 336 | WP_001080730.1 | colicin 1A immunity protein | - |
| SEEN462_RS00065 () | 7183..8286 | - | 1104 | WP_040028050.1 | colicin transporter | - |
| SEEN462_RS00070 () | 9146..9463 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| SEEN462_RS00075 () | 9460..9993 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| SEEN462_RS00080 () | 10087..11232 | - | 1146 | WP_000976514.1 | class C beta-lactamase CMY-2 | - |
| SEEN462_RS27010 () | 11629..11817 | + | 189 | WP_000957857.1 | hypothetical protein | - |
| SEEN462_RS00090 () | 11827..13026 | + | 1200 | WP_000948429.1 | IS91 family transposase | - |
| SEEN462_RS00095 () | 13190..13894 | - | 705 | WP_076149007.1 | colicin-Ia domain protein | - |
| SEEN462_RS00100 () | 14173..15519 | - | 1347 | WP_001132021.1 | hypothetical protein | - |
| SEEN462_RS00105 () | 15873..16475 | + | 603 | WP_000517689.1 | hypothetical protein | - |
| SEEN462_RS00110 () | 16531..17025 | + | 495 | WP_023278058.1 | hypothetical protein | - |
| SEEN462_RS00115 () | 17768..18241 | - | 474 | WP_001334658.1 | hypothetical protein | - |
| SEEN462_RS00120 () | 18358..19206 | - | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| SEEN462_RS00125 () | 19246..19527 | - | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SEEN462_RS00130 () | 19524..19793 | - | 270 | WP_000079928.1 | hypothetical protein | Antitoxin Detail |
| SEEN462_RS00135 () | 20702..21733 | - | 1032 | WP_000907874.1 | replication initiation protein | - |
| SEEN462_RS25365 () | 22706..22969 | + | 264 | WP_001324596.1 | ash family protein | - |
| SEEN462_RS00150 () | 22887..23174 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| SEEN462_RS00155 () | 23616..24149 | + | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| SEEN462_RS00160 () | 24403..25086 | + | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| SEEN462_RS00165 () | 25100..25666 | + | 567 | WP_000776428.1 | hypothetical protein | - |
| SEEN462_RS00170 () | 25934..26188 | + | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| SEEN462_RS00175 () | 26231..26683 | + | 453 | WP_000008892.1 | hypothetical protein | - |
| SEEN462_RS00180 () | 27357..28424 | + | 1068 | WP_000742600.1 | type IV pilus biogenesis lipoprotein PilL | - |
| SEEN462_RS00185 () | 28424..28861 | + | 438 | WP_000539807.1 | type IV pilus biogenesis protein PilM | - |
| SEEN462_RS00190 () | 28875..30557 | + | 1683 | WP_032311054.1 | PilN family type IVB pilus formation outer membrane protein | - |
| SEEN462_RS00195 () | 30550..31845 | + | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| SEEN462_RS00200 () | 31832..32284 | + | 453 | WP_001247336.1 | type IV pilus biogenesis protein PilP | - |
| SEEN462_RS00205 () | 32295..33848 | + | 1554 | WP_000362202.1 | Flp pilus assembly complex ATPase component TadA | - |
| SEEN462_RS00210 () | 33861..34958 | + | 1098 | WP_001208805.1 | type II secretion system F family protein | - |
| SEEN462_RS00215 () | 34976..35590 | + | 615 | WP_044436008.1 | pilus assembly protein PilX | - |
| SEEN462_RS00220 () | 35600..36160 | + | 561 | WP_000014116.1 | lytic transglycosylase domain-containing protein | - |
| SEEN462_RS25385 () | 36145..36801 | + | 657 | WP_001193553.1 | prepilin peptidase | - |
| SEEN462_RS00225 () | 36801..38092 | + | 1292 | Protein_44 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| SEEN462_RS27490 () | 38089..38337 | - | 249 | WP_001349157.1 | hypothetical protein | - |
| SEEN462_RS00235 () | 39857..41011 | + | 1155 | WP_001139957.1 | integrase | - |
| SEEN462_RS00240 () | 41162..41986 | + | 825 | WP_001238939.1 | hypothetical protein | - |
| SEEN462_RS00245 () | 42071..43273 | + | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| SEEN462_RS00250 () | 43333..43917 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| SEEN462_RS00255 () | 44312..44770 | + | 459 | WP_001079808.1 | IncI1-type conjugal transfer lipoprotein TraH | - |
| SEEN462_RS00260 () | 44767..45585 | + | 819 | WP_000646098.1 | IncI1-type conjugal transfer lipoprotein TraI | - |
| SEEN462_RS00265 () | 45582..46730 | + | 1149 | WP_001024972.1 | plasmid transfer ATPase TraJ | - |
| SEEN462_RS25415 () | 46727..47017 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| SEEN462_RS00270 () | 47032..47583 | + | 552 | WP_000014583.1 | phospholipase D family protein | - |
| SEEN462_RS00275 () | 47673..51440 | + | 3768 | WP_001141527.1 | DNA primase | - |
| SEEN462_RS00280 () | 51458..51805 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| SEEN462_RS00285 () | 51802..52494 | + | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| SEEN462_RS00290 () | 52505..53488 | + | 984 | WP_001191877.1 | IncI1-type conjugal transfer protein TraN | - |
| SEEN462_RS00295 () | 53491..54780 | + | 1290 | WP_001272003.1 | conjugal transfer protein TraO | - |
| SEEN462_RS00300 () | 54780..55484 | + | 705 | WP_000801919.1 | IncI1-type conjugal transfer protein TraP | - |
| SEEN462_RS00305 () | 55484..56011 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| SEEN462_RS00310 () | 56062..56466 | + | 405 | WP_000086959.1 | IncI1-type conjugal transfer protein TraR | - |
| SEEN462_RS00315 () | 56530..56718 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| SEEN462_RS00320 () | 56702..57502 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| SEEN462_RS00325 () | 57592..60636 | + | 3045 | WP_001024782.1 | IncI1-type conjugal transfer protein TraU | - |
| SEEN462_RS00330 () | 60636..61250 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| SEEN462_RS00335 () | 61217..62419 | + | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| SEEN462_RS00340 () | 62448..63032 | + | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| SEEN462_RS00345 () | 63129..65297 | + | 2169 | WP_000698357.1 | DotA/TraY family protein | - |
| SEEN462_RS00350 () | 65371..66021 | + | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| SEEN462_RS00355 () | 66093..66302 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| SEEN462_RS28030 () | 66694..66870 | + | 177 | WP_001054897.1 | hypothetical protein | - |
| SEEN462_RS00365 () | 67529..67780 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| SEEN462_RS00370 () | 67852..68004 | - | 153 | WP_001331364.1 | Hok/Gef family protein | - |
| SEEN462_RS00375 () | 68296..69504 | + | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| SEEN462_RS00380 () | 69523..70593 | + | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| SEEN462_RS00385 () | 70586..72877 | + | 2292 | WP_001289276.1 | hypothetical protein | - |
| SEEN462_RS00390 () | 72914..75613 | - | 2700 | WP_010891268.1 | IncI1-type relaxase NikB | - |
| SEEN462_RS00395 () | 75624..75956 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| SEEN462_RS00400 () | 76190..76525 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| SEEN462_RS00405 () | 76611..77459 | - | 849 | WP_001077021.1 | DUF4942 domain-containing protein | - |
| SEEN462_RS00410 () | 78040..78291 | + | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| SEEN462_RS00415 () | 78322..78567 | - | 246 | WP_001260884.1 | hypothetical protein | - |
| SEEN462_RS00420 () | 78567..79457 | - | 891 | WP_000038332.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SEEN462_RS00425 () | 79522..79788 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| SEEN462_RS00430 () | 79882..80316 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| SEEN462_RS00435 () | 81045..81545 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| SEEN462_RS00445 () | 82008..82604 | - | 597 | WP_000978012.1 | hypothetical protein | - |
| SEEN462_RS00450 () | 82601..83320 | - | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| SEEN462_RS00455 () | 83317..83751 | - | 435 | WP_000845904.1 | conjugation system SOS inhibitor PsiB | - |
| SEEN462_RS00460 () | 83806..85764 | - | 1959 | WP_001145462.1 | ParB/RepB/Spo0J family partition protein | - |
| SEEN462_RS00465 () | 85823..86056 | - | 234 | WP_000005985.1 | DUF905 family protein | - |
| SEEN462_RS00470 () | 86114..86641 | - | 528 | WP_001276114.1 | single-stranded DNA-binding protein | - |
| SEEN462_RS28035 () | 87010..87078 | + | 69 | Protein_94 | pilus protein | - |
| SEEN462_RS27510 () | 87412..87603 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| SEEN462_RS00485 () | 87600..88022 | - | 423 | WP_000271763.1 | DUF1380 family protein | - |
| SEEN462_RS00490 () | 88069..88494 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| SEEN462_RS28040 () | 88912..89688 | - | 777 | WP_024135924.1 | hypothetical protein | - |
| SEEN462_RS00505 () | 89739..90173 | - | 435 | WP_000274493.1 | DUF1380 family protein | - |
| SEEN462_RS00510 () | 90187..90408 | - | 222 | WP_001104893.1 | hypothetical protein | - |
| SEEN462_RS00515 () | 90409..91092 | - | 684 | WP_000086121.1 | DNA methylase | - |
| SEEN462_RS27520 () | 91168..91479 | - | 312 | WP_014640311.1 | hypothetical protein | - |
| SEEN462_RS00520 () | 91476..92378 | - | 903 | WP_000273912.1 | DUF1281 domain-containing protein | - |
| SEEN462_RS00525 () | 92796..93044 | + | 249 | WP_000618111.1 | DinI-like family protein | - |
| SEEN462_RS00530 () | 93041..93478 | + | 438 | WP_000109072.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|