MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70288 bp
Accession: NZ_CP009491 Location: 1..70288 Organism: Yersinia pestis strain PBM19 Replicon: plasmid pCD1
Accession: NZ_CP009491 Location: 1..70288 Organism: Yersinia pestis strain PBM19 Replicon: plasmid pCD1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH59_RS00620 () | 581..847 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| CH59_RS00625 () | 844..1629 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| CH59_RS00630 () | 1629..2693 | + | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| CH59_RS00635 () | 3269..3664 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| CH59_RS00640 () | 3788..4603 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| CH59_RS00645 () | 4682..4780 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| CH59_RS00650 () | 5006..5419 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| CH59_RS00655 () | 5425..7248 | + | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| CH59_RS00660 () | 7245..8504 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| CH59_RS00665 () | 8501..8701 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| CH59_RS00670 () | 8702..8965 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| CH59_RS00675 () | 8967..9314 | + | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| CH59_RS00680 () | 9311..9808 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| CH59_RS00685 () | 9809..10156 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| CH59_RS00690 () | 10163..10897 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| CH59_RS00695 () | 10897..11526 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| CH59_RS00700 () | 11472..12137 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| CH59_RS00705 () | 12362..12709 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| CH59_RS24725 () | 13257..14286 | + | 1030 | Protein_19 | IS3 family transposase | - |
| CH59_RS23040 () | 14305..14577 | + | 273 | Protein_20 | transposase | - |
| CH59_RS00725 () | 14798..16204 | - | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| CH59_RS00730 () | 16487..16720 | - | 234 | Protein_22 | transposase domain-containing protein | - |
| CH59_RS00735 () | 16723..17301 | + | 579 | Protein_23 | IS3 family transposase ISYpe1 | Transposase |
| CH59_RS00740 () | 17887..18753 | - | 867 | WP_002213287.1 | Effector protein YopJ | VF |
| CH59_RS00745 () | 19149..21347 | - | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| CH59_RS00750 () | 21355..21804 | - | 450 | WP_002229809.1 | hypothetical protein | VF |
| CH59_RS24730 () | 22060..22372 | - | 313 | Protein_27 | IS3 family transposase ISKpn37 | Transposase |
| CH59_RS23055 () | 22550..22789 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| CH59_RS00760 () | 23962..24840 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| CH59_RS00765 () | 24821..24895 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| CH59_RS00770 () | 25137..25391 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| CH59_RS00775 () | 25529..25777 | - | 249 | WP_002233137.1 | Phospholipase D | VF |
| CH59_RS23065 () | 25903..26211 | + | 309 | Protein_33 | DDE-type integrase/transposase/recombinase | - |
| CH59_RS25265 () | 26194..26601 | - | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| CH59_RS00785 () | 26625..26942 | - | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| CH59_RS00790 () | 27114..27572 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| CH59_RS00795 () | 27641..27910 | + | 270 | WP_042469136.1 | transposase | - |
| CH59_RS26050 () | 28007..28165 | - | 159 | Protein_38 | EamA family transporter | - |
| CH59_RS23080 () | 28235..29538 | - | 1304 | Protein_39 | Adhesin YadA | VF |
| CH59_RS00815 () | 30138..30488 | + | 351 | Protein_40 | IS3 family transposase IS1351 | Transposase |
| CH59_RS00820 () | 30521..32836 | - | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| CH59_RS00825 () | 33000..33551 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CH59_RS00830 () | 33570..34034 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| CH59_RS00835 () | 34173..34502 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| CH59_RS00845 () | 34602..35701 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| CH59_RS00850 () | 35849..36274 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| CH59_RS00855 () | 36650..37048 | - | 399 | Protein_47 | IS21 family transposase IS21 | Transposase |
| CH59_RS00860 () | 37048..37974 | - | 927 | Protein_48 | IS21 family transposase IS21 | Transposase |
| CH59_RS00865 () | 38063..39082 | + | 1020 | Protein_49 | IS21 family transposase IS100kyp | Transposase |
| CH59_RS00870 () | 39082..39858 | + | 777 | Protein_50 | IS21 family transposase IS100kyp | Transposase |
| CH59_RS25275 () | 39925..40173 | - | 249 | Protein_51 | IS21 family transposase IS21 | Transposase |
| CH59_RS00885 () | 40276..40920 | + | 645 | Protein_52 | IS3 family transposase ISYen3 | Transposase |
| CH59_RS00890 () | 40983..41375 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| CH59_RS00895 () | 41569..42228 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| CH59_RS00900 () | 42368..42667 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CH59_RS00905 () | 42660..42902 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| CH59_RS24745 () | 43068..43360 | - | 293 | Protein_57 | IS6 family transposase ISEas1 | Transposase |
| CH59_RS26055 () | 43447..43620 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| CH59_RS25855 () | 43769..44005 | - | 237 | WP_154020274.1 | hypothetical protein | - |
| CH59_RS00915 () | 44165..45130 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CH59_RS00920 () | 45127..46293 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| CH59_RS25280 () | 47053..48198 | - | 1146 | Protein_62 | IS3 family transposase | - |
| CH59_RS00940 () | 48305..48934 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| CH59_RS24755 () | 49080..49373 | - | 294 | Protein_64 | IS3 family transposase | - |
| CH59_RS00945 () | 49532..50080 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| CH59_RS00950 () | 50580..51548 | + | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| CH59_RS00955 () | 51548..51946 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| CH59_RS23120 () | 52351..52632 | + | 282 | Protein_68 | DDE-type integrase/transposase/recombinase | - |
| CH59_RS00960 () | 52649..53068 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| CH59_RS25285 () | 53593..53811 | - | 219 | Protein_70 | IS6 family transposase | - |
| CH59_RS25290 () | 53814..54059 | + | 246 | WP_116442925.1 | transposase | - |
| CH59_RS00965 () | 53941..54258 | + | 318 | Protein_72 | IS256 family transposase ISSod4 | Transposase |
| CH59_RS00970 () | 54301..55530 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| CH59_RS00975 () | 55924..56133 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| CH59_RS24760 () | 56154..56791 | + | 638 | Protein_75 | IS6 family transposase | - |
| CH59_RS00980 () | 57259..58179 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| CH59_RS00985 () | 58198..59403 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| CH59_RS00990 () | 59381..59887 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| CH59_RS00995 () | 59900..60880 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| CH59_RS01000 () | 60882..61169 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| CH59_RS01005 () | 61211..61651 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| CH59_RS01010 () | 61648..63762 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| CH59_RS01015 () | 63749..64093 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| CH59_RS01020 () | 64090..64458 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| CH59_RS01025 () | 64455..64826 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| CH59_RS01030 () | 64813..65091 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| CH59_RS01035 () | 65072..65953 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| CH59_RS01040 () | 66151..67469 | + | 1319 | Protein_88 | putative ATP synthase YscN | VF |
| CH59_RS01045 () | 67466..67930 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| CH59_RS01050 () | 67930..69297 | + | 1368 | WP_002212950.1 | hypothetical protein | VF |
| CH59_RS01055 () | 69294..70217 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|