MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 36120 bp
Accession: NZ_CP009460 Location: 4524450..4560569 Organism: Dickeya fangzhongdai strain ND14b Replicon: chromosome
Accession: NZ_CP009460 Location: 4524450..4560569 Organism: Dickeya fangzhongdai strain ND14b Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH89_RS19615 () | 4520738..4522438 | + | 1701 | WP_038667600.1 | assimilatory sulfite reductase (NADPH) hemoprotein subunit | - |
| LH89_RS19620 () | 4522574..4523821 | - | 1248 | WP_038667603.1 | glycosyltransferase | - |
| LH89_RS23395 () | 4524719..4525432 | - | 714 | WP_038667606.1 | hypothetical protein | - |
| LH89_RS22520 () | 4525714..4526925 | + | 1212 | WP_039519596.1 | DNA cytosine methyltransferase | - |
| LH89_RS19635 () | 4526922..4529891 | + | 2970 | WP_038667611.1 | ATP-binding protein | - |
| LH89_RS19640 () | 4529884..4531683 | + | 1800 | WP_038667613.1 | hypothetical protein | - |
| LH89_RS19645 () | 4531965..4532143 | + | 179 | Protein_3896 | helix-turn-helix domain-containing protein | - |
| LH89_RS19665 () | 4533983..4534678 | + | 696 | WP_047642943.1 | hypothetical protein | - |
| LH89_RS19670 () | 4535479..4536426 | + | 948 | WP_038667623.1 | DUF1738 domain-containing protein | - |
| LH89_RS19675 () | 4536745..4536981 | + | 237 | WP_038667626.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| LH89_RS19680 () | 4536984..4537298 | + | 315 | WP_038667629.1 | CcdB family protein | Toxin Detail |
| LH89_RS19685 () | 4537332..4538084 | - | 753 | WP_038667631.1 | hypothetical protein | - |
| LH89_RS19690 () | 4538093..4539829 | - | 1737 | WP_038667634.1 | type IV secretory system conjugative DNA transfer family protein | - |
| LH89_RS19695 () | 4540621..4540923 | - | 303 | WP_038667638.1 | conjugal transfer protein | - |
| LH89_RS19700 () | 4540966..4541982 | - | 1017 | WP_038667641.1 | P-type DNA transfer ATPase VirB11 | - |
| LH89_RS19705 () | 4541972..4543204 | - | 1233 | WP_038667644.1 | TrbI/VirB10 family protein | - |
| LH89_RS19710 () | 4543201..4544094 | - | 894 | WP_038667646.1 | P-type conjugative transfer protein VirB9 | - |
| LH89_RS19715 () | 4544091..4544774 | - | 684 | WP_038667649.1 | type IV secretion system protein | - |
| LH89_RS19725 () | 4544995..4546035 | - | 1041 | WP_038667654.1 | type IV secretion system protein | - |
| LH89_RS22530 () | 4546048..4546272 | - | 225 | WP_039551199.1 | EexN family lipoprotein | - |
| LH89_RS19730 () | 4546283..4546999 | - | 717 | WP_038667657.1 | type IV secretion system protein | - |
| LH89_RS19735 () | 4547023..4549770 | - | 2748 | WP_038667660.1 | VirB3 family type IV secretion system protein | - |
| LH89_RS19740 () | 4549780..4550061 | - | 282 | WP_087881280.1 | TrbC/VirB2 family protein | - |
| LH89_RS19745 () | 4550058..4550723 | - | 666 | WP_038667665.1 | lytic transglycosylase domain-containing protein | - |
| LH89_RS19750 () | 4550802..4551023 | - | 222 | WP_038667668.1 | hypothetical protein | - |
| LH89_RS22535 () | 4551520..4553670 | + | 2151 | WP_123961386.1 | AAA family ATPase | - |
| LH89_RS23400 () | 4553667..4554575 | + | 909 | WP_123961387.1 | HNH endonuclease | - |
| LH89_RS22540 () | 4555253..4555462 | - | 210 | WP_015730135.1 | TraR/DksA family transcriptional regulator | - |
| LH89_RS19770 () | 4555452..4556036 | - | 585 | WP_038667679.1 | DUF2857 domain-containing protein | - |
| LH89_RS19775 () | 4556053..4556247 | - | 195 | WP_038667681.1 | AlpA family transcriptional regulator | - |
| LH89_RS19780 () | 4556401..4557315 | - | 915 | WP_049870036.1 | hypothetical protein | - |
| LH89_RS19785 () | 4557729..4558028 | - | 300 | WP_049870037.1 | helix-turn-helix domain-containing protein | - |
| LH89_RS19790 () | 4558175..4558489 | + | 315 | WP_038667684.1 | helix-turn-helix domain-containing protein | - |
| LH89_RS22545 () | 4558674..4558988 | + | 315 | WP_025918867.1 | helix-turn-helix domain-containing protein | - |
| LH89_RS19795 () | 4559121..4560392 | - | 1272 | WP_038667687.1 | integrase arm-type DNA-binding domain-containing protein | - |
| LH89_RS19805 () | 4561014..4561280 | + | 267 | Protein_3926 | LysR family transcriptional regulator | - |
| LH89_RS19810 () | 4561356..4562759 | - | 1404 | WP_038667691.1 | D-serine/D-alanine/glycine transporter | - |
| LH89_RS19820 () | 4563467..4563691 | - | 225 | WP_022634132.1 | DUF2594 family protein | - |
| LH89_RS19825 () | 4564341..4564997 | + | 657 | WP_022634131.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|