MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 112443 bp
Accession: NZ_CP009460 Location: 1874819..1987261 Organism: Dickeya fangzhongdai strain ND14b Replicon: chromosome
Accession: NZ_CP009460 Location: 1874819..1987261 Organism: Dickeya fangzhongdai strain ND14b Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH89_RS07910 () | 1871447..1871791 | + | 345 | WP_038661909.1 | outer membrane protein assembly factor BamE | - |
| LH89_RS07915 () | 1871848..1872141 | - | 294 | WP_038661912.1 | RnfH family protein | - |
| LH89_RS07920 () | 1872134..1872568 | - | 435 | WP_038661915.1 | type II toxin-antitoxin system RatA family toxin | - |
| LH89_RS07925 () | 1872724..1873206 | + | 483 | WP_016942314.1 | SsrA-binding protein SmpB | - |
| LH89_RS07930 () | 1873801..1874988 | + | 1188 | WP_038661920.1 | tyrosine-type recombinase/integrase | - |
| LH89_RS07935 () | 1875023..1876771 | - | 1749 | WP_038661923.1 | AAA family ATPase | - |
| LH89_RS07940 () | 1877316..1878083 | - | 768 | WP_038661926.1 | phage capsid size determination protein | - |
| LH89_RS22150 () | 1878612..1878872 | + | 261 | WP_038661928.1 | AlpA family transcriptional regulator | - |
| LH89_RS23490 () | 1878869..1879015 | + | 147 | WP_024104727.1 | hypothetical protein | - |
| LH89_RS22155 () | 1879023..1879379 | + | 357 | Protein_1594 | ash family protein | - |
| LH89_RS23225 () | 1879370..1879567 | + | 198 | WP_024104726.1 | host cell division inhibitor Icd-like protein | - |
| LH89_RS07960 () | 1879560..1879772 | + | 213 | WP_038668887.1 | hypothetical protein | - |
| LH89_RS07965 () | 1879783..1882107 | + | 2325 | WP_038661932.1 | toprim domain-containing protein | - |
| LH89_RS07970 () | 1882353..1882946 | + | 594 | WP_038661935.1 | hypothetical protein | - |
| LH89_RS07975 () | 1883182..1884099 | - | 918 | WP_024104723.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| LH89_RS07980 () | 1884083..1884628 | - | 546 | WP_033569052.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| LH89_RS22160 () | 1885232..1885354 | - | 123 | Protein_1601 | integrase | - |
| LH89_RS07985 () | 1885471..1886916 | - | 1446 | WP_071842471.1 | TolC family protein | - |
| LH89_RS07990 () | 1886916..1888331 | - | 1416 | WP_205621444.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| LH89_RS07995 () | 1888347..1890509 | - | 2163 | WP_038661945.1 | type I secretion system permease/ATPase | - |
| LH89_RS08000 () | 1890624..1898303 | - | 7680 | WP_123961373.1 | hypothetical protein | - |
| LH89_RS23230 () | 1898356..1898982 | - | 627 | WP_123961374.1 | hypothetical protein | - |
| LH89_RS08005 () | 1899689..1900927 | - | 1239 | WP_038661951.1 | TrbI/VirB10 family protein | - |
| LH89_RS08010 () | 1900930..1901811 | - | 882 | WP_038661954.1 | P-type conjugative transfer protein TrbG | - |
| LH89_RS08015 () | 1901808..1902512 | - | 705 | WP_038661957.1 | conjugal transfer protein TrbF | - |
| LH89_RS08020 () | 1902515..1903678 | - | 1164 | WP_038661959.1 | P-type conjugative transfer protein TrbL | - |
| LH89_RS08025 () | 1903678..1904409 | - | 732 | WP_205621446.1 | P-type conjugative transfer protein TrbJ | - |
| LH89_RS08030 () | 1904409..1906859 | - | 2451 | WP_038661965.1 | conjugal transfer protein TrbE | - |
| LH89_RS08035 () | 1906870..1907142 | - | 273 | WP_038661967.1 | VirB3 family type IV secretion system protein | - |
| LH89_RS08040 () | 1907139..1907489 | - | 351 | WP_038661970.1 | TrbC/VirB2 family protein | - |
| LH89_RS08045 () | 1907486..1908496 | - | 1011 | WP_038661974.1 | P-type conjugative transfer ATPase TrbB | - |
| LH89_RS08050 () | 1908493..1908933 | - | 441 | WP_038661977.1 | ribbon-helix-helix protein, CopG family | - |
| LH89_RS08055 () | 1908930..1910885 | - | 1956 | WP_038661980.1 | conjugal transfer protein TraG | - |
| LH89_RS08060 () | 1911103..1911363 | - | 261 | WP_049869970.1 | hypothetical protein | - |
| LH89_RS08065 () | 1911385..1912299 | - | 915 | WP_038661984.1 | LysR family transcriptional regulator | - |
| LH89_RS08070 () | 1912484..1912753 | - | 270 | WP_038661988.1 | helix-turn-helix domain-containing protein | - |
| LH89_RS08075 () | 1912857..1913111 | + | 255 | WP_038661990.1 | helix-turn-helix domain-containing protein | - |
| LH89_RS08080 () | 1913198..1913446 | + | 249 | WP_038661993.1 | helix-turn-helix domain-containing protein | - |
| LH89_RS08085 () | 1913774..1916590 | - | 2817 | WP_038661996.1 | DEAD/DEAH box helicase | - |
| LH89_RS08090 () | 1916590..1918236 | - | 1647 | WP_038662000.1 | tetratricopeptide repeat protein | - |
| LH89_RS22165 () | 1919254..1920159 | - | 906 | WP_071842475.1 | hypothetical protein | - |
| LH89_RS22170 () | 1920156..1921184 | - | 1029 | WP_071842477.1 | DNA cytosine methyltransferase | - |
| LH89_RS22175 () | 1921575..1922093 | + | 519 | WP_071842478.1 | DNA mismatch endonuclease Vsr | - |
| LH89_RS08095 () | 1922515..1924455 | - | 1941 | WP_038662003.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| LH89_RS08100 () | 1924656..1925201 | - | 546 | WP_049869971.1 | S26 family signal peptidase | - |
| LH89_RS08105 () | 1925512..1926324 | - | 813 | WP_049870085.1 | replication initiator protein A | - |
| LH89_RS08110 () | 1926351..1926647 | - | 297 | WP_038662009.1 | helix-turn-helix domain-containing protein | - |
| LH89_RS08115 () | 1926731..1927528 | - | 798 | WP_038662012.1 | DUF2285 domain-containing protein | - |
| LH89_RS08120 () | 1927881..1928459 | - | 579 | WP_123961375.1 | hypothetical protein | - |
| LH89_RS08125 () | 1928645..1928953 | - | 309 | WP_038662017.1 | CcdB family protein | Toxin Detail |
| LH89_RS08130 () | 1928956..1929195 | - | 240 | WP_027711205.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| LH89_RS23010 () | 1929394..1929483 | - | 90 | Protein_1636 | DUF736 domain-containing protein | - |
| LH89_RS08135 () | 1929565..1929681 | + | 117 | Protein_1637 | transposase | - |
| LH89_RS08140 () | 1929907..1930923 | - | 1017 | WP_038662027.1 | IS110 family transposase | - |
| LH89_RS08150 () | 1930990..1931984 | + | 995 | Protein_1639 | IS3 family transposase | - |
| LH89_RS08155 () | 1932316..1932702 | + | 387 | WP_038662036.1 | acyl-CoA thioesterase | - |
| LH89_RS08160 () | 1933468..1934250 | + | 783 | WP_038662039.1 | transporter substrate-binding domain-containing protein | - |
| LH89_RS08165 () | 1934482..1935510 | - | 1029 | WP_038662042.1 | alpha/beta hydrolase | - |
| LH89_RS08170 () | 1935700..1936914 | - | 1215 | WP_038662045.1 | MFS transporter | - |
| LH89_RS08175 () | 1937298..1938188 | + | 891 | WP_205621445.1 | LysR family transcriptional regulator | - |
| LH89_RS22180 () | 1938392..1938733 | + | 342 | WP_205621443.1 | zinc ribbon domain-containing protein | - |
| LH89_RS08185 () | 1938770..1939702 | - | 933 | WP_038662052.1 | nucleoside recognition family protein | - |
| LH89_RS08190 () | 1940121..1941233 | - | 1113 | WP_038662055.1 | o-succinylbenzoate synthase | - |
| LH89_RS08195 () | 1941262..1942476 | - | 1215 | WP_038662058.1 | MFS transporter | - |
| LH89_RS08200 () | 1942659..1943582 | + | 924 | WP_038662061.1 | LysR family transcriptional regulator | - |
| LH89_RS08205 () | 1943684..1944787 | + | 1104 | WP_038668906.1 | lytic murein transglycosylase B | - |
| LH89_RS08215 () | 1945262..1946089 | - | 828 | WP_038662068.1 | 5-deoxy-glucuronate isomerase | - |
| LH89_RS08220 () | 1946114..1947004 | - | 891 | WP_038662071.1 | myo-inosose-2 dehydratase | - |
| LH89_RS08225 () | 1947033..1948997 | - | 1965 | WP_038662074.1 | 5-dehydro-2-deoxygluconokinase | - |
| LH89_RS08230 () | 1949052..1950200 | - | 1149 | WP_038662077.1 | Gfo/Idh/MocA family oxidoreductase | - |
| LH89_RS08235 () | 1950218..1951252 | - | 1035 | WP_038668909.1 | ABC transporter permease | - |
| LH89_RS08240 () | 1951269..1952816 | - | 1548 | WP_038662080.1 | sugar ABC transporter ATP-binding protein | - |
| LH89_RS08245 () | 1952873..1953811 | - | 939 | WP_038662082.1 | substrate-binding domain-containing protein | - |
| LH89_RS08250 () | 1953907..1954893 | - | 987 | WP_038662085.1 | inositol 2-dehydrogenase | - |
| LH89_RS08255 () | 1955599..1956348 | + | 750 | WP_038662088.1 | AAA family ATPase | - |
| LH89_RS23240 () | 1956529..1956888 | + | 360 | WP_123961376.1 | hypothetical protein | - |
| LH89_RS08260 () | 1956924..1957175 | + | 252 | WP_038662091.1 | hypothetical protein | - |
| LH89_RS22185 () | 1957175..1957468 | + | 294 | WP_071842479.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| LH89_RS08265 () | 1957477..1958142 | + | 666 | WP_123961377.1 | hypothetical protein | - |
| LH89_RS08270 () | 1958787..1960085 | + | 1299 | WP_038668912.1 | PAS domain-containing methyl-accepting chemotaxis protein | - |
| LH89_RS08275 () | 1960263..1960784 | - | 522 | WP_049842630.1 | NUDIX domain-containing protein | - |
| LH89_RS08280 () | 1960915..1961376 | + | 462 | WP_038662097.1 | DNA gyrase inhibitor SbmC | - |
| LH89_RS08285 () | 1961612..1963543 | - | 1932 | WP_038662100.1 | 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | - |
| LH89_RS08290 () | 1963570..1965081 | - | 1512 | WP_038662103.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| LH89_RS08295 () | 1965394..1966251 | + | 858 | WP_038662106.1 | MurR/RpiR family transcriptional regulator | - |
| LH89_RS08300 () | 1966474..1967280 | + | 807 | WP_038662109.1 | 2,5-didehydrogluconate reductase DkgB | - |
| LH89_RS08305 () | 1967347..1968234 | - | 888 | WP_038662113.1 | LysR family transcriptional regulator | - |
| LH89_RS08310 () | 1968341..1969516 | + | 1176 | WP_038662116.1 | MFS transporter | - |
| LH89_RS08315 () | 1969563..1970984 | - | 1422 | WP_038662119.1 | APC family permease | - |
| LH89_RS08320 () | 1971079..1972233 | - | 1155 | WP_038662122.1 | iron-containing alcohol dehydrogenase | - |
| LH89_RS08325 () | 1972245..1973615 | - | 1371 | WP_038662126.1 | aspartate aminotransferase family protein | - |
| LH89_RS08330 () | 1973783..1974607 | - | 825 | WP_038662130.1 | AraC family transcriptional regulator | - |
| LH89_RS08335 () | 1974790..1975890 | + | 1101 | WP_038662133.1 | D-alanine--D-alanine ligase | - |
| LH89_RS08340 () | 1975936..1976220 | - | 285 | WP_038662136.1 | hypothetical protein | - |
| LH89_RS08345 () | 1976235..1976630 | - | 396 | WP_038662139.1 | VOC family protein | - |
| LH89_RS08350 () | 1976774..1977013 | + | 240 | WP_013316433.1 | DinI family protein | - |
| LH89_RS08355 () | 1977412..1978848 | + | 1437 | WP_038662142.1 | glycoside-pentoside-hexuronide (GPH):cation symporter | - |
| LH89_RS08360 () | 1978884..1980434 | + | 1551 | WP_038662145.1 | glycoside hydrolase 43 family protein | - |
| LH89_RS08365 () | 1980628..1981353 | - | 726 | WP_038662149.1 | YnfC family lipoprotein | - |
| LH89_RS08370 () | 1981532..1982155 | + | 624 | WP_038662152.1 | LysE family translocator | - |
| LH89_RS08375 () | 1982165..1982710 | - | 546 | WP_038662155.1 | GNAT family N-acetyltransferase | - |
| LH89_RS08380 () | 1982863..1983285 | - | 423 | WP_038662157.1 | hypothetical protein | - |
| LH89_RS08385 () | 1983837..1987370 | + | 3534 | WP_038662160.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| LH89_RS08390 () | 1987620..1988708 | + | 1089 | WP_038668917.1 | L,D-transpeptidase family protein | - |
| LH89_RS08395 () | 1989008..1989463 | + | 456 | WP_038662164.1 | MarR family transcriptional regulator | - |
| LH89_RS08400 () | 1989460..1990581 | + | 1122 | WP_038662167.1 | HlyD family secretion protein | - |
| LH89_RS08405 () | 1990568..1992172 | + | 1605 | WP_038662169.1 | DHA2 family efflux MFS transporter permease subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|