MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 188477 bp
Accession: NZ_CP009294 Location: 1..188477 Organism: Novosphingobium pentaromativorans US6-1 Replicon: plasmid pLA1
Accession: NZ_CP009294 Location: 1..188477 Organism: Novosphingobium pentaromativorans US6-1 Replicon: plasmid pLA1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JI59_RS23545 () | 73..1161 | + | 1089 | WP_039859089.1 | replication initiation protein | - |
| JI59_RS23550 () | 1328..2530 | + | 1203 | WP_007015945.1 | Iron-sulfur cluster carrier protein | VF |
| JI59_RS23555 () | 2621..3634 | + | 1014 | WP_039859043.1 | ParB/RepB/Spo0J family partition protein | - |
| JI59_RS23560 () | 3747..4385 | - | 639 | Protein_3 | MarR family transcriptional regulator | - |
| JI59_RS23565 () | 4760..6217 | + | 1458 | WP_138921586.1 | Mu transposase C-terminal domain-containing protein | - |
| JI59_RS26950 () | 6205..6930 | + | 726 | Protein_5 | TniB family NTP-binding protein | - |
| JI59_RS23575 () | 7560..8528 | - | 969 | WP_041565072.1 | hypothetical protein | - |
| JI59_RS23580 () | 8861..9940 | + | 1080 | WP_051585614.1 | tyrosine-type recombinase/integrase | - |
| JI59_RS23585 () | 10009..10338 | + | 330 | WP_007015952.1 | hypothetical protein | - |
| JI59_RS23590 () | 10401..11639 | + | 1239 | WP_007015953.1 | TolC family protein | - |
| JI59_RS23595 () | 11654..12880 | + | 1227 | WP_037485835.1 | hypothetical protein | VF |
| JI59_RS23600 () | 12902..16066 | + | 3165 | WP_007015955.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| JI59_RS23605 () | 16158..17105 | + | 948 | Protein_12 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| JI59_RS23615 () | 17546..18310 | + | 765 | WP_007015959.1 | IS6 family transposase IS6100 | Transposase |
| JI59_RS23620 () | 18418..19245 | + | 828 | WP_047824528.1 | IclR family transcriptional regulator | - |
| JI59_RS23625 () | 19421..20575 | + | 1155 | WP_007015961.1 | MFS transporter | - |
| JI59_RS23635 () | 20805..22174 | + | 1370 | WP_085997527.1 | IS3 family transposase ISPko4 | Transposase |
| JI59_RS23640 () | 22250..23749 | - | 1500 | WP_007015965.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| JI59_RS23645 () | 23873..26347 | - | 2475 | WP_007015966.1 | TonB-dependent receptor | - |
| JI59_RS23650 () | 26360..26947 | - | 588 | WP_007015967.1 | 2-hydroxychromene-2-carboxylate isomerase | - |
| JI59_RS23655 () | 26944..28206 | - | 1263 | WP_007015968.1 | Rieske 2Fe-2S domain-containing protein | - |
| JI59_RS23660 () | 28229..28717 | - | 489 | WP_007015969.1 | aromatic-ring-hydroxylating dioxygenase subunit beta | - |
| JI59_RS23665 () | 28718..29044 | - | 327 | WP_037485736.1 | non-heme iron oxygenase ferredoxin subunit | - |
| JI59_RS23670 () | 29095..29994 | - | 900 | WP_007015971.1 | biphenyl-2,3-diol 1,2-dioxygenase | - |
| JI59_RS23675 () | 30284..31696 | + | 1413 | WP_007015972.1 | Rieske 2Fe-2S domain-containing protein | - |
| JI59_RS23680 () | 31693..32187 | + | 495 | WP_007015973.1 | aromatic-ring-hydroxylating dioxygenase subunit beta | - |
| JI59_RS23685 () | 32171..33187 | + | 1017 | WP_047824522.1 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | - |
| JI59_RS23690 () | 33184..34458 | + | 1275 | WP_007015975.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| JI59_RS23695 () | 34455..34934 | + | 480 | WP_007015976.1 | aromatic-ring-hydroxylating dioxygenase subunit beta | - |
| JI59_RS23700 () | 34984..35589 | + | 606 | WP_007015977.1 | glutathione transferase GstA | - |
| JI59_RS23705 () | 35768..36619 | + | 852 | WP_007015978.1 | alpha/beta fold hydrolase | - |
| JI59_RS23710 () | 36639..37562 | + | 924 | WP_007015979.1 | catechol 2,3-dioxygenase | - |
| JI59_RS23715 () | 37565..37996 | + | 432 | WP_007015980.1 | heme-binding protein | - |
| JI59_RS23720 () | 38050..39534 | + | 1485 | WP_037485729.1 | 2-hydroxymuconic semialdehyde dehydrogenase | - |
| JI59_RS23725 () | 39539..40351 | + | 813 | WP_007015982.1 | fumarylacetoacetate hydrolase family protein | - |
| JI59_RS23730 () | 40377..41315 | + | 939 | WP_007015983.1 | acetaldehyde dehydrogenase (acetylating) | - |
| JI59_RS23735 () | 41312..42343 | + | 1032 | WP_007015984.1 | 4-hydroxy-2-oxovalerate aldolase | - |
| JI59_RS23740 () | 42354..43124 | + | 771 | WP_007015985.1 | fumarylacetoacetate hydrolase family protein | - |
| JI59_RS23745 () | 43125..43337 | + | 213 | WP_007015986.1 | 2-hydroxymuconate tautomerase family protein | - |
| JI59_RS23750 () | 43330..43620 | + | 291 | WP_047824518.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| JI59_RS23755 () | 43640..45139 | + | 1500 | WP_007015988.1 | aldehyde dehydrogenase family protein | - |
| JI59_RS23760 () | 45182..45982 | + | 801 | WP_007015989.1 | 3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase | - |
| JI59_RS23765 () | 46055..46435 | + | 381 | WP_007015990.1 | hypothetical protein | - |
| JI59_RS23770 () | 46660..47217 | + | 558 | WP_138921581.1 | Serine recombinase PinR | VF |
| JI59_RS23775 () | 47334..48560 | + | 1227 | WP_007015992.1 | FAD-dependent oxidoreductase | - |
| JI59_RS23780 () | 48576..49355 | - | 780 | WP_037485824.1 | 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 | VF |
| JI59_RS23785 () | 49541..50542 | + | 1002 | WP_007015994.1 | dihydrodipicolinate synthase family protein | - |
| JI59_RS23790 () | 50553..51728 | + | 1176 | WP_007015995.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| JI59_RS23795 () | 51725..52222 | + | 498 | WP_007015996.1 | aromatic-ring-hydroxylating dioxygenase subunit beta | - |
| JI59_RS23800 () | 52289..53299 | + | 1011 | WP_007015997.1 | amidohydrolase | - |
| JI59_RS23805 () | 53375..53770 | + | 396 | WP_037485723.1 | RidA family protein | - |
| JI59_RS26495 () | 53763..54440 | + | 678 | WP_007015999.1 | RraA family protein | - |
| JI59_RS23815 () | 54453..55109 | + | 657 | WP_007016000.1 | diguanylate cyclase | - |
| JI59_RS23820 () | 55239..56342 | - | 1104 | WP_007016001.1 | IS630 family transposase ISBj5 | Transposase |
| JI59_RS23825 () | 56399..57301 | - | 903 | Protein_54 | IS3 family transposase ISSusp1 | Transposase |
| JI59_RS27245 () | 57245..57439 | + | 195 | WP_162473516.1 | IS110 family transposase ISMmg1 | Transposase |
| JI59_RS23830 () | 57369..58401 | + | 1033 | Protein_56 | IS110 family transposase ISMmg1 | Transposase |
| JI59_RS23835 () | 58648..58881 | - | 234 | Protein_57 | IS3 family transposase ISOgr1 | Transposase |
| JI59_RS23840 () | 59076..60644 | - | 1569 | Protein_58 | AMP-binding protein | - |
| JI59_RS23845 () | 60648..61607 | - | 960 | WP_047824562.1 | DMT family transporter | - |
| JI59_RS23850 () | 61735..63099 | + | 1365 | WP_039859049.1 | aromatic ring-hydroxylating dioxygenase subunit alpha | - |
| JI59_RS23855 () | 63141..63665 | + | 525 | WP_037485814.1 | aromatic-ring-hydroxylating dioxygenase subunit beta | - |
| JI59_RS23860 () | 63702..63914 | + | 213 | Protein_62 | alcohol dehydrogenase catalytic domain-containing protein | - |
| JI59_RS23865 () | 64047..65009 | + | 963 | WP_007016013.1 | dihydrodipicolinate synthase family protein | - |
| JI59_RS23870 () | 65030..66043 | + | 1014 | WP_007016014.1 | ketopantoate reductase family protein | - |
| JI59_RS23875 () | 66066..67133 | + | 1068 | WP_007016015.1 | tartrate dehydrogenase | - |
| JI59_RS23880 () | 67172..68494 | + | 1323 | WP_037485717.1 | LLM class flavin-dependent oxidoreductase | - |
| JI59_RS23885 () | 68549..68836 | + | 288 | WP_007016018.1 | DUF1330 domain-containing protein | - |
| JI59_RS23890 () | 68863..69282 | + | 420 | WP_007016019.1 | BphX family protein | - |
| JI59_RS26500 () | 69321..69647 | - | 327 | WP_081474106.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| JI59_RS23900 () | 69676..70953 | - | 1278 | WP_007016021.1 | cytochrome P450 | - |
| JI59_RS23905 () | 71108..71893 | + | 786 | WP_052118054.1 | FadR family transcriptional regulator | - |
| JI59_RS23910 () | 71908..73023 | + | 1116 | WP_007016023.1 | nitronate monooxygenase | - |
| JI59_RS23915 () | 73506..74063 | - | 558 | WP_031290454.1 | Tn3 family transposase ISPsy42 | Transposase |
| JI59_RS23920 () | 74203..77160 | + | 2958 | WP_039859054.1 | Tn3 family transposase TnpA_ISAzs17 | Transposase |
| JI59_RS23925 () | 77217..77738 | - | 522 | Protein_75 | IS21 family transposase ISPve1 | Transposase |
| JI59_RS23930 () | 77735..79231 | - | 1497 | WP_039859056.1 | IS21 family transposase ISSsp5 | Transposase |
| JI59_RS23935 () | 79280..79606 | + | 327 | WP_138921582.1 | hypothetical protein | - |
| JI59_RS23940 () | 80256..80648 | - | 393 | WP_138921583.1 | hypothetical protein | - |
| JI59_RS23945 () | 80890..81165 | + | 276 | WP_039859059.1 | hypothetical protein | - |
| JI59_RS23950 () | 81314..81928 | + | 615 | WP_007016032.1 | hypothetical protein | - |
| JI59_RS23955 () | 82140..83129 | + | 990 | WP_007016033.1 | 5'/3'-nucleotidase SurE | - |
| JI59_RS23960 () | 83164..84588 | - | 1425 | WP_039859099.1 | Outer membrane protein OprM | VF |
| JI59_RS23965 () | 84591..87776 | - | 3186 | WP_007016035.1 | Multidrug efflux pump subunit AcrB | VF |
| JI59_RS23970 () | 87780..88925 | - | 1146 | WP_007016036.1 | Multidrug resistance protein MexA | VF |
| JI59_RS23975 () | 89041..89625 | + | 585 | WP_007016037.1 | TetR/AcrR family transcriptional regulator | - |
| JI59_RS23980 () | 90091..90939 | + | 849 | WP_007016038.1 | Soluble lytic murein transglycosylase | VF |
| JI59_RS23985 () | 90998..91519 | - | 522 | WP_007016039.1 | hypothetical protein | - |
| JI59_RS23990 () | 91612..91971 | - | 360 | WP_039859104.1 | hypothetical protein | - |
| JI59_RS23995 () | 92320..92646 | + | 327 | WP_039859106.1 | hypothetical protein | - |
| JI59_RS24000 () | 92722..93006 | + | 285 | WP_007016042.1 | type IV conjugative transfer system protein TraL | - |
| JI59_RS24005 () | 93008..93580 | + | 573 | WP_007016043.1 | type IV conjugative transfer system protein TraE | - |
| JI59_RS24010 () | 93577..94386 | + | 810 | WP_007016044.1 | type-F conjugative transfer system secretin TraK | - |
| JI59_RS24015 () | 94386..95762 | + | 1377 | WP_007016045.1 | TraB/VirB10 family protein | - |
| JI59_RS24020 () | 95771..96634 | + | 864 | WP_007016046.1 | DsbC family protein | - |
| JI59_RS24025 () | 96631..97806 | + | 1176 | WP_007016047.1 | hypothetical protein | - |
| JI59_RS24030 () | 97812..100433 | + | 2622 | WP_007016048.1 | type IV secretion system protein TraC | - |
| JI59_RS24035 () | 100430..100798 | + | 369 | WP_039859061.1 | hypothetical protein | - |
| JI59_RS24040 () | 100770..101342 | + | 573 | WP_007016050.1 | type-F conjugative transfer system protein TrbI | - |
| JI59_RS24045 () | 101326..101844 | + | 519 | WP_007016051.1 | S26 family signal peptidase | - |
| JI59_RS24050 () | 101871..102497 | + | 627 | WP_007016052.1 | type-F conjugative transfer system protein TraW | - |
| JI59_RS24055 () | 102494..102772 | + | 279 | WP_007016053.1 | hypothetical protein | - |
| JI59_RS24060 () | 102772..103785 | + | 1014 | WP_085997528.1 | TraU family protein | - |
| JI59_RS24065 () | 104407..106011 | + | 1605 | WP_138921578.1 | group II intron reverse transcriptase/maturase | - |
| JI59_RS24070 () | 106008..106796 | + | 789 | WP_007015857.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JI59_RS24075 () | 106798..108933 | + | 2136 | WP_007015858.1 | conjugal transfer protein TraN | - |
| JI59_RS24080 () | 108959..109786 | + | 828 | WP_007015859.1 | conjugal transfer protein TraF | - |
| JI59_RS24085 () | 109786..111225 | + | 1440 | WP_039859018.1 | conjugal transfer protein TraH | - |
| JI59_RS24090 () | 111241..114258 | + | 3018 | WP_007015861.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| JI59_RS24095 () | 114604..114828 | - | 225 | WP_039859071.1 | hypothetical protein | - |
| JI59_RS24100 () | 115088..115291 | - | 204 | WP_007015864.1 | hypothetical protein | - |
| JI59_RS24105 () | 115340..118384 | - | 3045 | WP_007015865.1 | Multifunctional conjugation protein TraI | Relaxase |
| JI59_RS24110 () | 118390..120732 | - | 2343 | WP_007015866.1 | type IV secretion system DNA-binding domain-containing protein | - |
| JI59_RS24115 () | 120719..121009 | - | 291 | WP_007015867.1 | ribbon-helix-helix protein, CopG family | - |
| JI59_RS24120 () | 121484..121711 | + | 228 | WP_007015868.1 | hypothetical protein | - |
| JI59_RS24125 () | 121839..122150 | - | 312 | WP_007015869.1 | hypothetical protein | - |
| JI59_RS27500 () | 122147..122335 | - | 189 | WP_007015870.1 | hypothetical protein | - |
| JI59_RS24135 () | 122617..123672 | - | 1056 | WP_037486491.1 | DUF2493 domain-containing protein | - |
| JI59_RS24140 () | 124236..124517 | + | 282 | WP_007015872.1 | hypothetical protein | - |
| JI59_RS24145 () | 124899..126140 | - | 1242 | WP_007015873.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| JI59_RS24150 () | 126137..126349 | - | 213 | WP_007015874.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| JI59_RS24155 () | 126647..127162 | - | 516 | WP_007015875.1 | MucR family transcriptional regulator | - |
| JI59_RS24160 () | 127281..127838 | - | 558 | WP_007015877.1 | hypothetical protein | - |
| JI59_RS24165 () | 128339..128674 | - | 336 | Protein_123 | single-stranded DNA-binding protein | - |
| JI59_RS26510 () | 129155..129498 | - | 344 | Protein_124 | thermonuclease family protein | - |
| JI59_RS24170 () | 129812..130000 | + | 189 | WP_138921579.1 | hypothetical protein | - |
| JI59_RS24175 () | 130018..130707 | - | 690 | WP_007015881.1 | Secreted effector protein PipB2 | VF |
| JI59_RS24180 () | 130933..132165 | + | 1233 | WP_007015882.1 | DUF1173 domain-containing protein | - |
| JI59_RS24185 () | 132172..132675 | - | 504 | WP_007015883.1 | hypothetical protein | - |
| JI59_RS24190 () | 132764..133276 | - | 513 | WP_007015884.1 | hypothetical protein | - |
| JI59_RS24195 () | 133322..133813 | - | 492 | WP_007015885.1 | hypothetical protein | - |
| JI59_RS24200 () | 133810..134151 | - | 342 | WP_007015886.1 | hypothetical protein | - |
| JI59_RS24205 () | 134138..134602 | - | 465 | WP_007015887.1 | hypothetical protein | - |
| JI59_RS24210 () | 134655..135275 | - | 621 | WP_007015888.1 | SOS response-associated peptidase family protein | - |
| JI59_RS24215 () | 135373..135564 | + | 192 | WP_007015889.1 | hypothetical protein | - |
| JI59_RS24220 () | 135576..135932 | - | 357 | WP_007015890.1 | hypothetical protein | - |
| JI59_RS24225 () | 136096..136629 | - | 534 | WP_007015891.1 | DUF736 domain-containing protein | - |
| JI59_RS24230 () | 137050..138045 | + | 996 | WP_007015892.1 | ATP-binding protein | - |
| JI59_RS24235 () | 138051..140552 | + | 2502 | WP_007015893.1 | S8 family peptidase | - |
| JI59_RS24240 () | 140569..141357 | + | 789 | WP_007015894.1 | HNH endonuclease | - |
| JI59_RS24245 () | 141398..141805 | - | 408 | WP_039859074.1 | DUF2513 domain-containing protein | - |
| JI59_RS24250 () | 142294..143247 | + | 954 | WP_138921584.1 | hypothetical protein | - |
| JI59_RS24255 () | 143241..144212 | + | 972 | WP_007015899.1 | hypothetical protein | - |
| JI59_RS24260 () | 144224..144805 | + | 582 | WP_007015900.1 | hypothetical protein | - |
| JI59_RS24265 () | 144802..145530 | + | 729 | WP_007015901.1 | hypothetical protein | - |
| JI59_RS24270 () | 145530..146843 | + | 1314 | WP_007015902.1 | hypothetical protein | - |
| JI59_RS24275 () | 146918..147664 | + | 747 | WP_007015903.1 | helix-turn-helix transcriptional regulator | - |
| JI59_RS24280 () | 147796..148968 | - | 1173 | WP_007015905.1 | DUF3800 domain-containing protein | - |
| JI59_RS24285 () | 149121..149369 | - | 249 | WP_039859023.1 | hypothetical protein | - |
| JI59_RS24290 () | 149371..149682 | - | 312 | WP_007015907.1 | hypothetical protein | - |
| JI59_RS24295 () | 149687..150094 | - | 408 | WP_007015908.1 | DUF3768 domain-containing protein | - |
| JI59_RS24300 () | 150203..150691 | + | 489 | WP_007015909.1 | hypothetical protein | - |
| JI59_RS24305 () | 150685..150945 | - | 261 | WP_138921580.1 | hypothetical protein | - |
| JI59_RS24310 () | 150942..151385 | - | 444 | WP_039859025.1 | hypothetical protein | - |
| JI59_RS24315 () | 151382..153223 | - | 1842 | WP_039859027.1 | DNA polymerase | - |
| JI59_RS24320 () | 153809..154096 | - | 288 | WP_007015913.1 | hypothetical protein | - |
| JI59_RS24325 () | 154107..154763 | - | 657 | WP_007015914.1 | hypothetical protein | - |
| JI59_RS24330 () | 154867..155151 | - | 285 | WP_039859029.1 | hypothetical protein | - |
| JI59_RS24335 () | 155148..156050 | - | 903 | WP_007015916.1 | DUF1738 domain-containing protein | - |
| JI59_RS24340 () | 156095..158320 | - | 2226 | WP_039859031.1 | integrase | - |
| JI59_RS24345 () | 158317..160104 | - | 1788 | WP_007015919.1 | hypothetical protein | - |
| JI59_RS24350 () | 160101..161414 | - | 1314 | WP_081976352.1 | IS91 family transposase ISAzo26 | Transposase |
| JI59_RS27210 () | 161647..161784 | - | 138 | Protein_162 | hypothetical protein | - |
| JI59_RS24355 () | 161921..163054 | + | 1134 | WP_007015922.1 | tyrosine-type recombinase/integrase | - |
| JI59_RS24360 () | 163054..164829 | + | 1776 | WP_007015923.1 | site-specific integrase | - |
| JI59_RS26960 () | 166146..166655 | + | 510 | WP_138921585.1 | hypothetical protein | - |
| JI59_RS24370 () | 166642..167085 | + | 444 | WP_007015925.1 | hypothetical protein | - |
| JI59_RS24375 () | 167069..167968 | - | 900 | WP_007015926.1 | DUF1738 domain-containing protein | - |
| JI59_RS24380 () | 168079..168681 | - | 603 | Protein_168 | DUF1738 domain-containing protein | - |
| JI59_RS24385 () | 168678..170342 | - | 1665 | WP_007015928.1 | ATP-binding protein | - |
| JI59_RS24390 () | 170419..172473 | - | 2055 | WP_041565074.1 | ParB/RepB/Spo0J family partition protein | - |
| JI59_RS24395 () | 172730..173188 | + | 459 | WP_007015931.1 | helix-turn-helix domain-containing protein | - |
| JI59_RS24400 () | 173201..173791 | + | 591 | WP_007015932.1 | PIN domain-containing protein | - |
| JI59_RS24405 () | 173815..175647 | - | 1833 | WP_039859035.1 | strawberry notch C-terminal domain-containing protein | - |
| JI59_RS24410 () | 175704..177251 | + | 1548 | WP_037485774.1 | tyrosine-type recombinase/integrase | - |
| JI59_RS24415 () | 177245..178159 | + | 915 | WP_007015935.1 | tyrosine-type recombinase/integrase | - |
| JI59_RS24420 () | 178156..179172 | + | 1017 | WP_007015936.1 | Tyrosine recombinase XerD | VF |
| JI59_RS24425 () | 179162..180715 | - | 1554 | WP_007015937.1 | hypothetical protein | - |
| JI59_RS27215 () | 180850..181191 | + | 342 | WP_007015938.1 | hypothetical protein | - |
| JI59_RS24435 () | 181172..182404 | + | 1233 | WP_004212848.1 | tyrosine-type recombinase/integrase | - |
| JI59_RS24440 () | 182401..183756 | + | 1356 | WP_007015939.1 | tyrosine-type recombinase/integrase | - |
| JI59_RS24445 () | 183753..184757 | + | 1005 | WP_007015940.1 | site-specific integrase | - |
| JI59_RS24450 () | 184803..187001 | - | 2199 | WP_007015941.1 | strawberry notch family protein | - |
| JI59_RS24455 () | 187060..187902 | - | 843 | WP_039859041.1 | toprim domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|