MGE detailed information
MGE type: Genomic_island MGE length: 26521 bp
Accession: NZ_CP009028 Location: 2820486..2847006 Organism: Xanthomonas citri pv. citri strain 5208 Replicon: chromosome
Accession: NZ_CP009028 Location: 2820486..2847006 Organism: Xanthomonas citri pv. citri strain 5208 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMD17_RS12750 () | 2817408..2817584 | - | 177 | WP_011051567.1 | DUF3606 domain-containing protein | - |
| AMD17_RS12755 () | 2817804..2818205 | + | 402 | WP_003485983.1 | H-NS histone family protein | - |
| AMD17_RS12765 () | 2818494..2819585 | + | 1092 | WP_015463304.1 | site-specific integrase | - |
| AMD17_RS12775 () | 2820486..2822657 | + | 2172 | WP_011051569.1 | DotA/TraY family protein | - |
| AMD17_RS12780 () | 2822667..2823188 | + | 522 | WP_011051570.1 | hypothetical protein | - |
| AMD17_RS24910 () | 2823627..2823767 | - | 141 | WP_157860651.1 | hypothetical protein | - |
| AMD17_RS25265 () | 2824053..2825009 | - | 957 | WP_011051571.1 | hypothetical protein | - |
| AMD17_RS12790 () | 2825076..2826209 | - | 1134 | Protein_2414 | IS5 family transposase ISXo4 | Transposase |
| AMD17_RS12795 () | 2826249..2827336 | - | 1088 | Protein_2415 | IS3 family transposase ISXcd1 | Transposase |
| AMD17_RS12805 () | 2827549..2827728 | - | 180 | WP_015463309.1 | hypothetical protein | - |
| AMD17_RS12810 () | 2827999..2828313 | - | 315 | WP_015463310.1 | hypothetical protein | - |
| AMD17_RS12815 () | 2828316..2828606 | - | 291 | WP_011051576.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AMD17_RS12820 () | 2828594..2828872 | - | 279 | WP_004541313.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| AMD17_RS12825 () | 2829042..2830310 | - | 1269 | Protein_2420 | Tn3 family transposase ISPsy42 | Transposase |
| AMD17_RS12835 () | 2830359..2831584 | + | 1226 | Protein_2421 | IS3 family transposase ISJsp1 | Transposase |
| AMD17_RS12840 () | 2832202..2833158 | + | 957 | WP_197707729.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| AMD17_RS12845 () | 2833348..2835456 | + | 2109 | WP_011051581.1 | AAA family ATPase | - |
| AMD17_RS12850 () | 2835507..2835695 | + | 189 | WP_011051582.1 | hypothetical protein | - |
| AMD17_RS12855 () | 2835692..2837278 | + | 1587 | WP_011051583.1 | N-6 DNA methylase | - |
| AMD17_RS12860 () | 2837275..2838192 | + | 918 | WP_011051584.1 | XamI family restriction endonuclease | - |
| AMD17_RS12865 () | 2838201..2838530 | + | 330 | WP_015463316.1 | hypothetical protein | - |
| AMD17_RS12870 () | 2838634..2839044 | + | 411 | WP_011051586.1 | plasmid pRiA4b ORF-3 family protein | - |
| AMD17_RS25270 () | 2839067..2839243 | - | 177 | WP_015463318.1 | hypothetical protein | - |
| AMD17_RS25275 () | 2839306..2839491 | - | 186 | WP_015463319.1 | hypothetical protein | - |
| AMD17_RS23635 () | 2839436..2839636 | - | 201 | WP_011051587.1 | ribbon-helix-helix protein, CopG family | - |
| AMD17_RS12880 () | 2840197..2840457 | + | 261 | WP_015463320.1 | hypothetical protein | - |
| AMD17_RS12885 () | 2840856..2841857 | - | 1002 | WP_011051588.1 | replication protein | - |
| AMD17_RS12890 () | 2842090..2842323 | + | 234 | WP_040107635.1 | hypothetical protein | - |
| AMD17_RS12895 () | 2842902..2844296 | + | 1395 | WP_011051590.1 | SIR2 family protein | - |
| AMD17_RS12900 () | 2844293..2846410 | + | 2118 | WP_011051591.1 | ATP-binding protein | - |
| AMD17_RS25280 () | 2846830..2847006 | + | 177 | WP_003485979.1 | hypothetical protein | - |
| AMD17_RS12910 () | 2847289..2848395 | + | 1107 | WP_016849926.1 | diguanylate cyclase | - |
| AMD17_RS12915 () | 2848438..2848947 | - | 510 | WP_011051594.1 | chemotaxis protein CheW | - |
| AMD17_RS12920 () | 2848959..2850617 | - | 1659 | WP_011051595.1 | MCP four helix bundle domain-containing protein | - |
| AMD17_RS12925 () | 2850928..2851533 | + | 606 | WP_170914521.1 | DNA-3-methyladenine glycosylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xanthomonas axonopodis pv. citri str. 306 | Genomic island | TA20720 | NC_003919 | 2820490..2847010 | 0 |