MGE detailed information
MGE type: Genomic_island MGE length: 26522 bp
Accession: NZ_CP009019 Location: 2809750..2836271 Organism: Xanthomonas citri pv. citri strain GD2 Replicon: chromosome
Accession: NZ_CP009019 Location: 2809750..2836271 Organism: Xanthomonas citri pv. citri strain GD2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMD23_RS12735 () | 2806672..2806848 | - | 177 | WP_011051567.1 | DUF3606 domain-containing protein | - |
| AMD23_RS12740 () | 2807068..2807469 | + | 402 | WP_003485983.1 | H-NS histone family protein | - |
| AMD23_RS12750 () | 2807758..2808849 | + | 1092 | WP_015463304.1 | site-specific integrase | - |
| AMD23_RS12760 () | 2809750..2811921 | + | 2172 | WP_011051569.1 | DotA/TraY family protein | - |
| AMD23_RS12765 () | 2811931..2812452 | + | 522 | WP_011051570.1 | hypothetical protein | - |
| AMD23_RS25110 () | 2813317..2814273 | - | 957 | WP_011051571.1 | hypothetical protein | - |
| AMD23_RS12775 () | 2814340..2815473 | - | 1134 | Protein_2401 | IS5 family transposase ISXo4 | Transposase |
| AMD23_RS12780 () | 2815513..2816600 | - | 1088 | Protein_2402 | IS3 family transposase ISXcd1 | Transposase |
| AMD23_RS12790 () | 2816813..2816992 | - | 180 | WP_015463309.1 | hypothetical protein | - |
| AMD23_RS12795 () | 2817263..2817577 | - | 315 | WP_015463310.1 | hypothetical protein | - |
| AMD23_RS12800 () | 2817580..2817870 | - | 291 | WP_011051576.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AMD23_RS12805 () | 2817858..2818136 | - | 279 | WP_004541313.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| AMD23_RS12810 () | 2818306..2819574 | - | 1269 | Protein_2407 | Tn3 family transposase ISPsy42 | Transposase |
| AMD23_RS12820 () | 2819623..2820848 | + | 1226 | Protein_2408 | IS3 family transposase ISJsp1 | Transposase |
| AMD23_RS12825 () | 2821467..2822423 | + | 957 | WP_015463313.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| AMD23_RS12830 () | 2822613..2824721 | + | 2109 | WP_011051581.1 | AAA family ATPase | - |
| AMD23_RS12835 () | 2824772..2824960 | + | 189 | WP_011051582.1 | hypothetical protein | - |
| AMD23_RS12840 () | 2824957..2826543 | + | 1587 | WP_011051583.1 | N-6 DNA methylase | - |
| AMD23_RS12845 () | 2826540..2827457 | + | 918 | WP_011051584.1 | XamI family restriction endonuclease | - |
| AMD23_RS12850 () | 2827466..2827795 | + | 330 | WP_015463316.1 | hypothetical protein | - |
| AMD23_RS12855 () | 2827899..2828309 | + | 411 | WP_011051586.1 | plasmid pRiA4b ORF-3 family protein | - |
| AMD23_RS25115 () | 2828332..2828508 | - | 177 | WP_015463318.1 | hypothetical protein | - |
| AMD23_RS25120 () | 2828571..2828756 | - | 186 | WP_015463319.1 | hypothetical protein | - |
| AMD23_RS23490 () | 2828701..2828901 | - | 201 | WP_011051587.1 | ribbon-helix-helix protein, CopG family | - |
| AMD23_RS12865 () | 2829462..2829722 | + | 261 | WP_015463320.1 | hypothetical protein | - |
| AMD23_RS12870 () | 2830121..2831122 | - | 1002 | WP_011051588.1 | replication protein | - |
| AMD23_RS12875 () | 2831355..2831588 | + | 234 | WP_040107635.1 | hypothetical protein | - |
| AMD23_RS12880 () | 2832167..2833561 | + | 1395 | WP_011051590.1 | SIR2 family protein | - |
| AMD23_RS12885 () | 2833558..2835675 | + | 2118 | WP_015463321.1 | ATP-binding protein | - |
| AMD23_RS25125 () | 2836095..2836271 | + | 177 | WP_003485979.1 | hypothetical protein | - |
| AMD23_RS12895 () | 2836554..2837660 | + | 1107 | WP_016849926.1 | diguanylate cyclase | - |
| AMD23_RS12900 () | 2837703..2838212 | - | 510 | WP_011051594.1 | chemotaxis protein CheW | - |
| AMD23_RS12905 () | 2838224..2839882 | - | 1659 | WP_011051595.1 | MCP four helix bundle domain-containing protein | - |
| AMD23_RS12910 () | 2840193..2840798 | + | 606 | WP_170914521.1 | DNA-3-methyladenine glycosylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xanthomonas axonopodis pv. citri str. 306 | Genomic island | TA20720 | NC_003919 | 2820490..2847010 | 0 |