MGE detailed information
MGE type: Prophage MGE length: 18843 bp
Accession: NZ_CP008943 Location: 4623642..4642484 Organism: Yersinia pseudotuberculosis strain ATCC 6904 Replicon: chromosome
Accession: NZ_CP008943 Location: 4623642..4642484 Organism: Yersinia pseudotuberculosis strain ATCC 6904 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DJ40_RS20890 () | 4619081..4619707 | - | 627 | WP_002210914.1 | high frequency lysogenization protein HflD | - |
| DJ40_RS20895 () | 4619765..4620880 | - | 1116 | WP_038401874.1 | tRNA 2-thiouridine(34) synthase MnmA | - |
| DJ40_RS20900 () | 4621067..4621513 | - | 447 | WP_002210912.1 | NUDIX hydrolase | - |
| DJ40_RS20905 () | 4621506..4622134 | - | 629 | Protein_3991 | 23S rRNA pseudouridine(2457) synthase RluE | - |
| DJ40_RS20910 () | 4622265..4623518 | + | 1254 | WP_032466488.1 | NADP-dependent isocitrate dehydrogenase | - |
| DJ40_RS20915 () | 4623642..4624766 | - | 1125 | WP_038401411.1 | hypothetical protein ; Integrase | Integrase |
| DJ40_RS20920 () | 4624750..4624992 | - | 243 | WP_038401413.1 | excisionase | - |
| DJ40_RS24195 () | 4625031..4625189 | - | 159 | WP_098087225.1 | hypothetical protein | - |
| DJ40_RS20925 () | 4625191..4625427 | - | 237 | WP_038401415.1 | hypothetical protein | - |
| DJ40_RS21945 () | 4625420..4626091 | - | 672 | WP_049862797.1 | hypothetical protein | - |
| DJ40_RS20935 () | 4626088..4626414 | - | 327 | WP_038401879.1 | hypothetical protein | - |
| DJ40_RS20940 () | 4626420..4626980 | - | 561 | WP_038401417.1 | hypothetical protein | - |
| DJ40_RS20945 () | 4626980..4627846 | - | 867 | WP_049862798.1 | Rha family transcriptional regulator | - |
| DJ40_RS20950 () | 4627843..4628124 | - | 282 | WP_038401419.1 | hypothetical protein | - |
| DJ40_RS20955 () | 4628134..4628370 | - | 237 | WP_049862799.1 | hypothetical protein | - |
| DJ40_RS20960 () | 4628442..4628630 | + | 189 | WP_038401421.1 | hypothetical protein | - |
| DJ40_RS20965 () | 4628627..4629589 | + | 963 | Protein_4004 | toprim domain-containing protein | - |
| DJ40_RS20970 () | 4629589..4630350 | + | 762 | WP_038401423.1 | antitermination protein | - |
| DJ40_RS20975 () | 4630698..4631453 | + | 756 | WP_038401885.1 | serine/threonine protein kinase | - |
| DJ40_RS20980 () | 4631450..4632187 | + | 738 | WP_038401426.1 | protein phosphatase 2C domain-containing protein | - |
| DJ40_RS20985 () | 4632272..4632610 | + | 339 | WP_038401427.1 | phage holin, lambda family | - |
| DJ40_RS20990 () | 4632600..4632995 | + | 396 | WP_038401429.1 | M15 family metallopeptidase | - |
| DJ40_RS20995 () | 4633231..4633698 | + | 468 | WP_038401887.1 | lysis protein | - |
| DJ40_RS21000 () | 4633909..4634091 | + | 183 | WP_038401431.1 | hypothetical protein | - |
| DJ40_RS21005 () | 4634328..4634696 | + | 369 | WP_038401432.1 | hypothetical protein | - |
| DJ40_RS23100 () | 4634727..4635332 | + | 606 | WP_071840332.1 | terminase small subunit | - |
| DJ40_RS21020 () | 4635665..4635841 | + | 177 | WP_025383392.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| DJ40_RS21025 () | 4635892..4636299 | + | 408 | WP_038401436.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| DJ40_RS21030 () | 4636356..4637960 | + | 1605 | WP_038401438.1 | bacteriophage TerL protein | - |
| DJ40_RS21035 () | 4638058..4638540 | - | 483 | WP_144243032.1 | DUF1073 domain-containing protein | - |
| DJ40_RS21040 () | 4638604..4639245 | + | 642 | WP_200876958.1 | hypothetical protein | - |
| DJ40_RS21045 () | 4639249..4639470 | + | 222 | WP_038401443.1 | hypothetical protein | - |
| DJ40_RS21050 () | 4639463..4641244 | + | 1782 | WP_038401445.1 | phage tail protein | - |
| DJ40_RS21055 () | 4641626..4641871 | - | 246 | WP_012304440.1 | DinI-like family protein | - |
| DJ40_RS21060 () | 4641885..4642127 | - | 243 | WP_012304439.1 | DinI family protein | - |
| DJ40_RS23105 () | 4642263..4642484 | + | 222 | WP_098087206.1 | isocitrate dehydrogenase | - |
| DJ40_RS21065 () | 4642630..4643673 | - | 1044 | WP_038401447.1 | LacI family DNA-binding transcriptional regulator | - |
| DJ40_RS21070 () | 4643933..4644193 | - | 261 | WP_002210908.1 | hypothetical protein | - |
| DJ40_RS21075 () | 4644313..4645893 | - | 1581 | WP_038401449.1 | PAS domain-containing methyl-accepting chemotaxis protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|