MGE detailed information
MGE type: Prophage MGE length: 49670 bp
Accession: NZ_CP008943 Location: 4056516..4106185 Organism: Yersinia pseudotuberculosis strain ATCC 6904 Replicon: chromosome
Accession: NZ_CP008943 Location: 4056516..4106185 Organism: Yersinia pseudotuberculosis strain ATCC 6904 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DJ40_RS18305 () | 4052342..4053022 | + | 681 | WP_002209679.1 | ribonuclease III | - |
| DJ40_RS18310 () | 4053019..4053930 | + | 912 | WP_002214829.1 | GTPase Era | - |
| DJ40_RS18315 () | 4053940..4054665 | + | 726 | WP_002209680.1 | DNA repair protein RecO | - |
| DJ40_RS18320 () | 4054824..4055555 | + | 732 | WP_012104785.1 | pyridoxine 5'-phosphate synthase | - |
| DJ40_RS18325 () | 4055555..4055935 | + | 381 | WP_011192825.1 | holo-ACP synthase | - |
| DJ40_RS18330 () | 4056041..4056301 | - | 261 | WP_002211567.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| DJ40_RS18335 () | 4056516..4057916 | + | 1401 | WP_038401141.1 | hypothetical protein ; Integrase | Integrase |
| DJ40_RS18345 () | 4058125..4059423 | - | 1299 | WP_144243036.1 | DEAD/DEAH box helicase | - |
| DJ40_RS24160 () | 4059421..4060386 | - | 966 | Protein_3495 | DNA polymerase I | - |
| DJ40_RS18355 () | 4060385..4061092 | + | 708 | Protein_3496 | DUF2303 family protein | - |
| DJ40_RS18360 () | 4061279..4061929 | + | 651 | Protein_3497 | DNA polymerase I | - |
| DJ40_RS18365 () | 4062061..4062441 | - | 381 | WP_038401145.1 | hypothetical protein | - |
| DJ40_RS18370 () | 4062426..4062770 | - | 345 | Protein_3499 | DUF2815 family protein | - |
| DJ40_RS18375 () | 4062783..4064093 | - | 1311 | WP_038401147.1 | DUF2800 domain-containing protein | - |
| DJ40_RS18380 () | 4064096..4064830 | - | 735 | WP_038401149.1 | hypothetical protein | - |
| DJ40_RS18385 () | 4065392..4066069 | - | 678 | WP_038401151.1 | helix-turn-helix domain-containing protein | - |
| DJ40_RS18390 () | 4066210..4066410 | + | 201 | WP_038401153.1 | transcriptional regulator | - |
| DJ40_RS18395 () | 4066414..4068588 | + | 2175 | WP_049862795.1 | hypothetical protein | - |
| DJ40_RS18400 () | 4068867..4069079 | + | 213 | WP_038401155.1 | hypothetical protein | - |
| DJ40_RS18405 () | 4069161..4069586 | + | 426 | WP_038401156.1 | antitermination protein Q | - |
| DJ40_RS18410 () | 4069958..4070338 | + | 381 | WP_012303802.1 | phage holin family protein | - |
| DJ40_RS18415 () | 4070477..4070947 | - | 471 | WP_038401158.1 | hypothetical protein | - |
| DJ40_RS23955 () | 4070955..4071092 | - | 138 | WP_155407490.1 | hypothetical protein | - |
| DJ40_RS18420 () | 4071337..4071537 | + | 201 | WP_038401836.1 | phage holin family protein | - |
| DJ40_RS18425 () | 4071515..4071997 | + | 483 | WP_038401159.1 | lysozyme | - |
| DJ40_RS23375 () | 4071982..4072374 | + | 393 | WP_038401160.1 | hypothetical protein | - |
| DJ40_RS18435 () | 4072594..4073145 | + | 552 | WP_038401162.1 | terminase small subunit | - |
| DJ40_RS18440 () | 4073169..4073528 | - | 360 | WP_012303808.1 | helix-turn-helix domain-containing protein | - |
| DJ40_RS18445 () | 4073580..4073840 | - | 261 | WP_038401164.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DJ40_RS18450 () | 4073984..4075600 | + | 1617 | WP_038401165.1 | bacteriophage TerL protein | - |
| DJ40_RS18455 () | 4075600..4077072 | + | 1473 | WP_038401168.1 | DUF1073 domain-containing protein | - |
| DJ40_RS18460 () | 4077092..4077685 | + | 594 | WP_080693621.1 | minor capsid protein | - |
| DJ40_RS18465 () | 4077689..4078915 | + | 1227 | WP_038401173.1 | DUF2213 domain-containing protein | - |
| DJ40_RS18470 () | 4078919..4079410 | + | 492 | WP_038401175.1 | hypothetical protein | - |
| DJ40_RS18475 () | 4079423..4080367 | + | 945 | WP_038401177.1 | DUF2184 domain-containing protein | - |
| DJ40_RS18480 () | 4080405..4080749 | + | 345 | WP_057534853.1 | hypothetical protein | - |
| DJ40_RS18485 () | 4080703..4081107 | + | 405 | WP_038401179.1 | DUF4054 domain-containing protein | - |
| DJ40_RS18490 () | 4081104..4081598 | + | 495 | WP_038401181.1 | hypothetical protein | - |
| DJ40_RS18495 () | 4081585..4081983 | + | 399 | WP_038401183.1 | hypothetical protein | - |
| DJ40_RS18500 () | 4081949..4082512 | + | 564 | WP_038401185.1 | hypothetical protein | - |
| DJ40_RS18505 () | 4082515..4083990 | + | 1476 | WP_038401186.1 | DUF3383 domain-containing protein | - |
| DJ40_RS18510 () | 4084002..4084442 | + | 441 | WP_038401189.1 | DUF3277 family protein | - |
| DJ40_RS18515 () | 4084453..4084851 | + | 399 | WP_038401192.1 | hypothetical protein | - |
| DJ40_RS18520 () | 4084863..4085036 | + | 174 | WP_162472804.1 | lytic transglycosylase | - |
| DJ40_RS18525 () | 4085029..4087047 | + | 2019 | WP_038401195.1 | lytic transglycosylase domain-containing protein | - |
| DJ40_RS18530 () | 4087047..4087673 | + | 627 | WP_038401197.1 | hypothetical protein | - |
| DJ40_RS18535 () | 4087670..4087975 | + | 306 | WP_038401199.1 | hypothetical protein | - |
| DJ40_RS18540 () | 4087978..4089039 | + | 1062 | WP_038401201.1 | hypothetical protein | - |
| DJ40_RS18545 () | 4089040..4089378 | + | 339 | WP_038401203.1 | hypothetical protein | - |
| DJ40_RS18550 () | 4089490..4089714 | + | 225 | WP_038401206.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| DJ40_RS18555 () | 4089711..4090085 | + | 375 | WP_025383660.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| DJ40_RS18560 () | 4090148..4090906 | + | 759 | WP_038401208.1 | hypothetical protein | - |
| DJ40_RS18565 () | 4090903..4091256 | + | 354 | WP_038401210.1 | bacteriophage protein | - |
| DJ40_RS18570 () | 4091257..4092444 | + | 1188 | WP_038401211.1 | baseplate J/gp47 family protein | - |
| DJ40_RS18575 () | 4092444..4093118 | + | 675 | WP_038401213.1 | DUF2612 domain-containing protein | - |
| DJ40_RS21935 () | 4093111..4094109 | + | 999 | WP_049862796.1 | phage tail protein | - |
| DJ40_RS18590 () | 4094111..4094578 | + | 468 | WP_042592787.1 | tail fiber assembly protein | - |
| DJ40_RS18595 () | 4094750..4095028 | - | 279 | WP_012303833.1 | hypothetical protein | - |
| DJ40_RS18600 () | 4095009..4095527 | - | 519 | WP_012303834.1 | DUF2778 domain-containing protein | - |
| DJ40_RS18605 () | 4095975..4096814 | - | 840 | WP_002211566.1 | MurR/RpiR family transcriptional regulator | - |
| DJ40_RS18610 () | 4097022..4097909 | + | 888 | WP_002211565.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| DJ40_RS18615 () | 4098148..4098843 | + | 696 | WP_038401214.1 | phosphatidylglycerophosphatase C | - |
| DJ40_RS18620 () | 4098914..4099516 | + | 603 | WP_038401217.1 | tRNA adenosine(34) deaminase TadA | - |
| DJ40_RS18625 () | 4099643..4101103 | - | 1461 | WP_002211562.1 | membrane-bound lytic murein transglycosylase MltF | - |
| DJ40_RS18630 () | 4101419..4105309 | + | 3891 | WP_038401220.1 | phosphoribosylformylglycinamidine synthase | - |
| DJ40_RS23800 () | 4105306..4105413 | - | 108 | WP_032487261.1 | hypothetical protein | - |
| DJ40_RS18635 () | 4105736..4106185 | - | 450 | WP_002211560.1 | hypothetical protein | - |
| DJ40_RS18640 () | 4106637..4107197 | - | 561 | WP_011192821.1 | hypothetical protein | - |
| DJ40_RS18650 () | 4108426..4108882 | + | 457 | Protein_3555 | IS200/IS605 family transposase | - |
| DJ40_RS18655 () | 4109101..4110537 | + | 1437 | WP_011192820.1 | HAMP domain-containing histidine kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|