MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 93160 bp
Accession: NZ_CP008869 Location: 5440677..5533836 Organism: Pseudomonas aeruginosa strain W16407 Replicon: chromosome
Accession: NZ_CP008869 Location: 5440677..5533836 Organism: Pseudomonas aeruginosa strain W16407 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV98_RS25820 () | 5436193..5440446 | + | 4254 | WP_019395747.1 | two-partner secretion system exoprotein TpsA4 | - |
| HV98_RS25830 () | 5440814..5441674 | + | 861 | WP_023082029.1 | ParA family protein | - |
| HV98_RS25835 () | 5441676..5442413 | + | 738 | WP_023082030.1 | hypothetical protein | - |
| HV98_RS25840 () | 5442410..5442907 | + | 498 | WP_003111783.1 | hypothetical protein | - |
| HV98_RS25845 () | 5442913..5443701 | + | 789 | WP_012076838.1 | Lar family restriction alleviation protein | - |
| HV98_RS25850 () | 5443701..5444402 | + | 702 | WP_023082032.1 | DUF2786 domain-containing protein | - |
| HV98_RS25855 () | 5444399..5445031 | + | 633 | WP_023082033.1 | HNH endonuclease | - |
| HV98_RS25860 () | 5445015..5445239 | + | 225 | WP_012076841.1 | hypothetical protein | - |
| HV98_RS25865 () | 5445236..5446579 | + | 1344 | WP_012076842.1 | replicative DNA helicase | - |
| HV98_RS32915 () | 5447018..5447464 | - | 447 | WP_021263367.1 | hypothetical protein | - |
| HV98_RS25875 () | 5448401..5448838 | - | 438 | WP_010792221.1 | hypothetical protein | - |
| HV98_RS25880 () | 5449016..5449201 | + | 186 | WP_010792222.1 | hypothetical protein | - |
| HV98_RS25885 () | 5449191..5449718 | + | 528 | WP_003120967.1 | hypothetical protein | - |
| HV98_RS25890 () | 5449715..5449972 | + | 258 | WP_004352848.1 | hypothetical protein | - |
| HV98_RS25895 () | 5449965..5450204 | + | 240 | WP_010792223.1 | hypothetical protein | - |
| HV98_RS25900 () | 5450197..5450430 | + | 234 | WP_003103841.1 | hypothetical protein | - |
| HV98_RS25905 () | 5450430..5451452 | + | 1023 | WP_012076845.1 | nucleoid-associated protein YejK | - |
| HV98_RS25910 () | 5451449..5452339 | + | 891 | WP_012076846.1 | DNA adenine methylase | - |
| HV98_RS25915 () | 5452360..5452629 | + | 270 | WP_012076847.1 | Arc family DNA-binding protein | - |
| HV98_RS25920 () | 5452626..5454359 | + | 1734 | WP_031674717.1 | ParB family protein | - |
| HV98_RS25925 () | 5454387..5455154 | + | 768 | WP_004352844.1 | DUF2857 domain-containing protein | - |
| HV98_RS25930 () | 5455151..5456476 | + | 1326 | WP_023082035.1 | hypothetical protein | - |
| HV98_RS32920 () | 5456735..5457133 | + | 399 | WP_145867879.1 | hypothetical protein | - |
| HV98_RS32925 () | 5457134..5457304 | + | 171 | WP_186364076.1 | hypothetical protein | - |
| HV98_RS32930 () | 5457305..5457589 | + | 285 | WP_143481045.1 | hypothetical protein | - |
| HV98_RS25945 () | 5458016..5458213 | + | 198 | WP_023082036.1 | hypothetical protein | - |
| HV98_RS25950 () | 5458370..5459098 | + | 729 | WP_023082037.1 | TIGR03761 family integrating conjugative element protein | - |
| HV98_RS25955 () | 5459104..5459652 | + | 549 | WP_023082038.1 | DUF3158 family protein | - |
| HV98_RS25960 () | 5459700..5460542 | + | 843 | WP_023082039.1 | Rha family transcriptional regulator | - |
| HV98_RS25965 () | 5460572..5461060 | + | 489 | WP_023082040.1 | single-stranded DNA-binding protein | - |
| HV98_RS25970 () | 5461168..5461521 | + | 354 | WP_003120979.1 | helix-turn-helix domain-containing protein | - |
| HV98_RS25975 () | 5461641..5461808 | + | 168 | WP_128729268.1 | CrpP family protein | - |
| HV98_RS25980 () | 5461923..5463842 | + | 1920 | WP_023082041.1 | type I DNA topoisomerase | - |
| HV98_RS25985 () | 5463850..5464602 | + | 753 | WP_023082042.1 | hypothetical protein | - |
| HV98_RS25995 () | 5464903..5466792 | + | 1890 | WP_023101908.1 | hypothetical protein | - |
| HV98_RS26000 () | 5466789..5468765 | + | 1977 | WP_031691363.1 | DEAD/DEAH box helicase | - |
| HV98_RS26005 () | 5468904..5469248 | + | 345 | WP_023082045.1 | hypothetical protein | - |
| HV98_RS26010 () | 5469319..5469609 | - | 291 | WP_003448662.1 | putative addiction module antidote protein | Antitoxin Detail |
| HV98_RS26015 () | 5469606..5469905 | - | 300 | WP_003120987.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HV98_RS26020 () | 5470107..5471231 | + | 1125 | WP_023082046.1 | TcpQ domain-containing protein | - |
| HV98_RS26025 () | 5471231..5472940 | + | 1710 | WP_010792227.1 | PilN family type IVB pilus formation outer membrane protein | - |
| HV98_RS26030 () | 5472944..5474269 | + | 1326 | WP_003120992.1 | type 4b pilus protein PilO2 | - |
| HV98_RS26035 () | 5474259..5474792 | + | 534 | WP_003120993.1 | type IV pilus biogenesis protein PilP | - |
| HV98_RS26040 () | 5474801..5476381 | + | 1581 | WP_003120994.1 | Flp pilus assembly complex ATPase component TadA | - |
| HV98_RS26045 () | 5476381..5477460 | + | 1080 | WP_003123335.1 | type II secretion system F family protein | - |
| HV98_RS26050 () | 5477482..5478012 | + | 531 | WP_003120996.1 | pilus assembly protein PilX | - |
| HV98_RS26055 () | 5478009..5478965 | + | 957 | WP_003448639.1 | Flp pilus assembly complex ATPase component TadA | - |
| HV98_RS26060 () | 5478958..5480337 | + | 1380 | WP_003099769.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| HV98_RS26065 () | 5480355..5480792 | + | 438 | WP_003120998.1 | type IV pilus biogenesis protein PilM | - |
| HV98_RS26075 () | 5481714..5482280 | + | 567 | WP_003120999.1 | hypothetical protein | - |
| HV98_RS26080 () | 5482544..5482912 | + | 369 | WP_078451037.1 | IS66 family insertion sequence hypothetical protein | - |
| HV98_RS26085 () | 5482909..5483244 | + | 336 | WP_019719038.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| HV98_RS26090 () | 5483326..5484882 | + | 1557 | WP_019818069.1 | IS66 family transposase | - |
| HV98_RS26095 () | 5485537..5486499 | + | 963 | WP_004577240.1 | IS30-like element ISPpu17 family transposase | - |
| HV98_RS26100 () | 5486574..5487860 | + | 1287 | WP_020302086.1 | outer membrane protein transport protein | - |
| HV98_RS26105 () | 5488511..5488999 | + | 489 | WP_003448595.1 | DUF3577 domain-containing protein | - |
| HV98_RS32935 () | 5489136..5489294 | + | 159 | WP_003121002.1 | hypothetical protein | - |
| HV98_RS26110 () | 5489368..5489565 | + | 198 | WP_003448593.1 | hypothetical protein | - |
| HV98_RS26115 () | 5489837..5490469 | + | 633 | WP_171947489.1 | ABC transporter substrate-binding protein | - |
| HV98_RS26120 () | 5490705..5491055 | + | 351 | WP_003099791.1 | hypothetical protein | - |
| HV98_RS26125 () | 5491112..5491744 | + | 633 | WP_003099792.1 | DUF3275 family protein | - |
| HV98_RS26130 () | 5491741..5492016 | + | 276 | WP_003099794.1 | hypothetical protein | - |
| HV98_RS26135 () | 5492086..5492448 | + | 363 | WP_003099795.1 | hypothetical protein | - |
| HV98_RS26140 () | 5492516..5492776 | + | 261 | WP_003099797.1 | hypothetical protein | - |
| HV98_RS26145 () | 5492869..5493474 | + | 606 | WP_003099799.1 | hypothetical protein | - |
| HV98_RS26150 () | 5493504..5494949 | + | 1446 | WP_003099801.1 | class I SAM-dependent methyltransferase | - |
| HV98_RS26155 () | 5495054..5497303 | + | 2250 | WP_003099803.1 | DEAD/DEAH box helicase | - |
| HV98_RS26160 () | 5497627..5498853 | + | 1227 | WP_023082048.1 | hypothetical protein | - |
| HV98_RS26170 () | 5499252..5500523 | + | 1272 | WP_023082049.1 | IS4-like element ISPa1635 family transposase | - |
| HV98_RS26175 () | 5500769..5500876 | + | 108 | Protein_5082 | helix-turn-helix domain-containing protein | - |
| HV98_RS26180 () | 5500942..5501667 | - | 726 | WP_023082050.1 | hypothetical protein | - |
| HV98_RS26185 () | 5501699..5502364 | - | 666 | WP_031643854.1 | DUF3218 family protein | - |
| HV98_RS26190 () | 5502375..5503406 | - | 1032 | WP_031643855.1 | hypothetical protein | - |
| HV98_RS26195 () | 5504015..5504704 | + | 690 | WP_023082052.1 | hypothetical protein | - |
| HV98_RS26200 () | 5504715..5505470 | + | 756 | WP_023082053.1 | TIGR03759 family integrating conjugative element protein | - |
| HV98_RS26205 () | 5505455..5506036 | + | 582 | WP_015648301.1 | hypothetical protein | - |
| HV98_RS26210 () | 5506033..5506533 | + | 501 | WP_023082054.1 | integrating conjugative element protein | - |
| HV98_RS26215 () | 5506542..5506811 | + | 270 | WP_023082055.1 | hypothetical protein | - |
| HV98_RS26220 () | 5506815..5509046 | + | 2232 | WP_023082056.1 | type IV conjugative transfer system coupling protein TraD | - |
| HV98_RS26225 () | 5509046..5509792 | + | 747 | WP_003099824.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| HV98_RS26230 () | 5509810..5510301 | + | 492 | WP_003099826.1 | hypothetical protein | - |
| HV98_RS26235 () | 5510543..5512024 | + | 1482 | WP_023082057.1 | UvrD-helicase domain-containing protein | - |
| HV98_RS32940 () | 5512155..5513264 | + | 1110 | WP_023082058.1 | hypothetical protein | - |
| HV98_RS26245 () | 5513309..5513620 | - | 312 | WP_003117074.1 | DUF2845 domain-containing protein | - |
| HV98_RS26250 () | 5513793..5514092 | + | 300 | WP_003109393.1 | hypothetical protein | - |
| HV98_RS26255 () | 5514185..5514523 | + | 339 | WP_020751097.1 | RAQPRD family integrative conjugative element protein | - |
| HV98_RS26260 () | 5514520..5514759 | + | 240 | WP_023443559.1 | TIGR03758 family integrating conjugative element protein | - |
| HV98_RS26265 () | 5514777..5515133 | + | 357 | WP_003109398.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| HV98_RS26270 () | 5515144..5515530 | + | 387 | WP_003109399.1 | TIGR03750 family conjugal transfer protein | - |
| HV98_RS26275 () | 5515527..5516186 | + | 660 | WP_003109400.1 | TIGR03746 family integrating conjugative element protein | - |
| HV98_RS26280 () | 5516183..5517067 | + | 885 | WP_003109401.1 | TIGR03749 family integrating conjugative element protein | - |
| HV98_RS26285 () | 5517051..5518556 | + | 1506 | WP_020751098.1 | TIGR03752 family integrating conjugative element protein | - |
| HV98_RS26290 () | 5518534..5518977 | + | 444 | WP_020751099.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| HV98_RS26295 () | 5518977..5521919 | + | 2943 | WP_031691298.1 | conjugative transfer ATPase | - |
| HV98_RS26300 () | 5521916..5522200 | + | 285 | WP_031691299.1 | hypothetical protein | - |
| HV98_RS26305 () | 5522197..5522856 | + | 660 | WP_034008122.1 | DsbA family protein | - |
| HV98_RS26310 () | 5522853..5523071 | - | 219 | WP_003099864.1 | hypothetical protein | - |
| HV98_RS26315 () | 5523280..5523711 | + | 432 | WP_003099865.1 | TIGR03757 family integrating conjugative element protein | - |
| HV98_RS26320 () | 5523711..5524649 | + | 939 | WP_003099867.1 | TIGR03756 family integrating conjugative element protein | - |
| HV98_RS26325 () | 5524667..5526055 | + | 1389 | WP_023101924.1 | integrating conjugative element protein | - |
| HV98_RS26330 () | 5526055..5526402 | + | 348 | WP_003117086.1 | hypothetical protein | - |
| HV98_RS26335 () | 5526399..5527910 | + | 1512 | WP_023087695.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HV98_RS26340 () | 5527935..5528279 | - | 345 | WP_071534978.1 | hypothetical protein | - |
| HV98_RS26345 () | 5528398..5528670 | + | 273 | WP_023087696.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HV98_RS26350 () | 5528674..5529024 | + | 351 | WP_023087697.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HV98_RS26355 () | 5529355..5531244 | + | 1890 | WP_023101925.1 | helicase/relaxase domain-containing protein | - |
| HV98_RS26360 () | 5531241..5532581 | + | 1341 | WP_003099879.1 | site-specific integrase | - |
| HV98_RS26365 () | 5533035..5533592 | + | 558 | Protein_5120 | Tn3 family transposase | - |
| HV98_RS26385 () | 5534274..5536838 | - | 2565 | WP_003145976.1 | ATP-dependent chaperone ClpB | - |
| HV98_RS26390 () | 5536994..5537722 | - | 729 | WP_003102588.1 | peptidoglycan editing factor PgeF | - |
| HV98_RS26395 () | 5537719..5538681 | - | 963 | WP_003094686.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|