MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 87848 bp
Accession: NZ_CP008866 Location: 5456109..5543956 Organism: Pseudomonas aeruginosa strain T38079 Replicon: chromosome
Accession: NZ_CP008866 Location: 5456109..5543956 Organism: Pseudomonas aeruginosa strain T38079 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW01_RS25875 () | 5451681..5455880 | + | 4200 | WP_016852119.1 | two-partner secretion system exoprotein TpsA4 | - |
| HW01_RS25880 () | 5456246..5457112 | + | 867 | WP_003111785.1 | ParA family protein | - |
| HW01_RS25885 () | 5457114..5457851 | + | 738 | WP_019486077.1 | hypothetical protein | - |
| HW01_RS25890 () | 5457848..5458345 | + | 498 | WP_003111783.1 | hypothetical protein | - |
| HW01_RS25895 () | 5458351..5459172 | + | 822 | WP_019486078.1 | hypothetical protein | - |
| HW01_RS25900 () | 5459169..5459855 | + | 687 | WP_003122071.1 | hypothetical protein | - |
| HW01_RS25905 () | 5459855..5460556 | + | 702 | WP_004347982.1 | DUF2786 domain-containing protein | - |
| HW01_RS25910 () | 5460553..5461260 | + | 708 | WP_003122069.1 | HNH endonuclease | - |
| HW01_RS25915 () | 5461244..5461462 | + | 219 | WP_003122068.1 | hypothetical protein | - |
| HW01_RS25920 () | 5461459..5462802 | + | 1344 | WP_019486079.1 | replicative DNA helicase | - |
| HW01_RS32715 () | 5463241..5463687 | - | 447 | WP_003117028.1 | hypothetical protein | - |
| HW01_RS25930 () | 5463865..5464050 | + | 186 | WP_019486080.1 | hypothetical protein | - |
| HW01_RS25935 () | 5464040..5464567 | + | 528 | WP_003141385.1 | hypothetical protein | - |
| HW01_RS25940 () | 5464564..5464821 | + | 258 | WP_019486081.1 | hypothetical protein | - |
| HW01_RS32415 () | 5464814..5465311 | + | 498 | WP_123796553.1 | hypothetical protein | - |
| HW01_RS25950 () | 5465304..5465537 | + | 234 | WP_019486083.1 | hypothetical protein | - |
| HW01_RS25955 () | 5465537..5466559 | + | 1023 | WP_023124916.1 | nucleoid-associated protein YejK | - |
| HW01_RS25960 () | 5466556..5467446 | + | 891 | WP_003117034.1 | DNA adenine methylase | - |
| HW01_RS25965 () | 5467467..5467736 | + | 270 | WP_003117035.1 | Arc family DNA-binding protein | - |
| HW01_RS25970 () | 5467733..5469466 | + | 1734 | WP_019484534.1 | ParB family protein | - |
| HW01_RS25975 () | 5469494..5470261 | + | 768 | WP_004352844.1 | DUF2857 domain-containing protein | - |
| HW01_RS25980 () | 5470258..5471583 | + | 1326 | WP_019484535.1 | hypothetical protein | - |
| HW01_RS25990 () | 5472837..5473034 | + | 198 | WP_019485319.1 | hypothetical protein | - |
| HW01_RS25995 () | 5473191..5473919 | + | 729 | WP_016851605.1 | TIGR03761 family integrating conjugative element protein | - |
| HW01_RS26000 () | 5473925..5474473 | + | 549 | WP_016851606.1 | DUF3158 family protein | - |
| HW01_RS26005 () | 5474521..5475351 | + | 831 | WP_012076855.1 | phage regulatory protein | - |
| HW01_RS26010 () | 5475381..5475839 | + | 459 | WP_016851607.1 | single-stranded DNA-binding protein | - |
| HW01_RS26015 () | 5475945..5476139 | + | 195 | WP_016851608.1 | hypothetical protein | - |
| HW01_RS26020 () | 5476384..5476551 | + | 168 | WP_170323396.1 | CrpP family protein | - |
| HW01_RS26025 () | 5476667..5478586 | + | 1920 | WP_023101571.1 | type I DNA topoisomerase | - |
| HW01_RS26030 () | 5478893..5479102 | + | 210 | WP_003105733.1 | cold-shock protein | - |
| HW01_RS26035 () | 5479324..5481213 | + | 1890 | WP_016851610.1 | hypothetical protein | - |
| HW01_RS26040 () | 5481210..5483186 | + | 1977 | WP_016851611.1 | DEAD/DEAH box helicase | - |
| HW01_RS26045 () | 5483327..5483671 | + | 345 | WP_016851612.1 | hypothetical protein | - |
| HW01_RS26050 () | 5483742..5484032 | - | 291 | WP_003448662.1 | putative addiction module antidote protein | Antitoxin Detail |
| HW01_RS26055 () | 5484029..5484328 | - | 300 | WP_003120987.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HW01_RS26060 () | 5484530..5485654 | + | 1125 | WP_012076859.1 | hypothetical protein | VF |
| HW01_RS26065 () | 5485654..5487363 | + | 1710 | WP_012076860.1 | hypothetical protein | VF |
| HW01_RS26070 () | 5487367..5488692 | + | 1326 | WP_003099758.1 | type 4b pilus protein PilO2 | - |
| HW01_RS26075 () | 5488682..5489215 | + | 534 | WP_003099760.1 | type IV pilus biogenesis protein PilP | - |
| HW01_RS26080 () | 5489224..5490804 | + | 1581 | WP_003099761.1 | hypothetical protein | VF |
| HW01_RS26085 () | 5490804..5491883 | + | 1080 | WP_003099764.1 | hypothetical protein | VF |
| HW01_RS26090 () | 5491905..5492435 | + | 531 | WP_003099765.1 | hypothetical protein | VF |
| HW01_RS26095 () | 5492432..5493388 | + | 957 | WP_003117051.1 | hypothetical protein | VF |
| HW01_RS26100 () | 5493381..5494760 | + | 1380 | WP_003117053.1 | hypothetical protein | VF |
| HW01_RS26105 () | 5494778..5495215 | + | 438 | WP_003117054.1 | hypothetical protein | VF |
| HW01_RS32720 () | 5496278..5496523 | + | 246 | WP_003117055.1 | hypothetical protein | - |
| HW01_RS32725 () | 5496598..5496771 | + | 174 | WP_003158172.1 | hypothetical protein | - |
| HW01_RS26120 () | 5497232..5497711 | + | 480 | WP_003117056.1 | DUF3577 domain-containing protein | - |
| HW01_RS32730 () | 5497849..5498007 | + | 159 | WP_003109368.1 | hypothetical protein | - |
| HW01_RS26125 () | 5498081..5498278 | + | 198 | WP_003117057.1 | hypothetical protein | - |
| HW01_RS26135 () | 5498763..5499470 | + | 708 | WP_003117058.1 | hypothetical protein | - |
| HW01_RS26140 () | 5499706..5500056 | + | 351 | WP_003099791.1 | hypothetical protein | - |
| HW01_RS26145 () | 5500113..5500745 | + | 633 | WP_003158170.1 | DUF3275 family protein | - |
| HW01_RS26150 () | 5500742..5501017 | + | 276 | WP_003117060.1 | hypothetical protein | - |
| HW01_RS26155 () | 5501087..5501449 | + | 363 | WP_003117061.1 | hypothetical protein | - |
| HW01_RS26160 () | 5501517..5501771 | + | 255 | WP_003117062.1 | hypothetical protein | - |
| HW01_RS26165 () | 5501864..5502469 | + | 606 | WP_003158169.1 | hypothetical protein | - |
| HW01_RS26170 () | 5502499..5503944 | + | 1446 | WP_003158168.1 | class I SAM-dependent methyltransferase | - |
| HW01_RS32425 () | 5504050..5504211 | + | 162 | Protein_5070 | helicase | - |
| HW01_RS26175 () | 5504237..5504667 | - | 431 | Protein_5071 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HW01_RS26180 () | 5504772..5505455 | + | 684 | WP_003158165.1 | SOS response-associated peptidase family protein | - |
| HW01_RS26195 () | 5506319..5506693 | + | 375 | WP_003158163.1 | hypothetical protein | - |
| HW01_RS32735 () | 5506718..5507302 | + | 585 | WP_044265603.1 | hypothetical protein | - |
| HW01_RS26205 () | 5507287..5507883 | + | 597 | WP_003158161.1 | VWA domain-containing protein | - |
| HW01_RS26215 () | 5508435..5508827 | + | 393 | WP_003158160.1 | hypothetical protein | - |
| HW01_RS26220 () | 5508846..5509169 | + | 324 | WP_003158159.1 | hypothetical protein | - |
| HW01_RS26225 () | 5509996..5510268 | - | 273 | WP_003125312.1 | hypothetical protein | - |
| HW01_RS26230 () | 5510486..5511184 | + | 699 | WP_023094353.1 | hypothetical protein | - |
| HW01_RS26235 () | 5511195..5511950 | + | 756 | WP_003099814.1 | TIGR03759 family integrating conjugative element protein | - |
| HW01_RS26240 () | 5511935..5512516 | + | 582 | WP_003117072.1 | hypothetical protein | VF |
| HW01_RS26245 () | 5512513..5513013 | + | 501 | WP_003099819.1 | integrating conjugative element protein | - |
| HW01_RS26250 () | 5513085..5513291 | + | 207 | WP_073689213.1 | hypothetical protein | - |
| HW01_RS26255 () | 5513295..5515526 | + | 2232 | WP_003099821.1 | type IV conjugative transfer system coupling protein TraD | - |
| HW01_RS26260 () | 5515526..5516272 | + | 747 | WP_003099824.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| HW01_RS26265 () | 5516290..5516781 | + | 492 | WP_003099826.1 | hypothetical protein | - |
| HW01_RS26270 () | 5517023..5518504 | + | 1482 | WP_003117073.1 | UvrD-helicase domain-containing protein | - |
| HW01_RS32740 () | 5518636..5519745 | + | 1110 | WP_003121016.1 | hypothetical protein | - |
| HW01_RS26280 () | 5519791..5520102 | - | 312 | WP_003117074.1 | DUF2845 domain-containing protein | - |
| HW01_RS26285 () | 5520275..5520574 | + | 300 | WP_003117075.1 | hypothetical protein | - |
| HW01_RS26290 () | 5520668..5521006 | + | 339 | WP_003158157.1 | RAQPRD family integrative conjugative element protein | - |
| HW01_RS26295 () | 5521003..5521242 | + | 240 | WP_003121019.1 | TIGR03758 family integrating conjugative element protein | - |
| HW01_RS26300 () | 5521260..5521616 | + | 357 | WP_003117077.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| HW01_RS26305 () | 5521627..5522013 | + | 387 | WP_003117078.1 | TIGR03750 family conjugal transfer protein | - |
| HW01_RS26310 () | 5522010..5522669 | + | 660 | WP_003117079.1 | TIGR03746 family integrating conjugative element protein | - |
| HW01_RS26315 () | 5522666..5523550 | + | 885 | WP_019484428.1 | TIGR03749 family integrating conjugative element protein | - |
| HW01_RS26320 () | 5523534..5525039 | + | 1506 | WP_019484427.1 | TIGR03752 family integrating conjugative element protein | - |
| HW01_RS26325 () | 5525017..5525460 | + | 444 | WP_023083781.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| HW01_RS26330 () | 5525460..5528402 | + | 2943 | WP_023083782.1 | conjugative transfer ATPase | - |
| HW01_RS26335 () | 5528399..5528683 | + | 285 | WP_003086159.1 | hypothetical protein | - |
| HW01_RS26340 () | 5528680..5529339 | + | 660 | WP_019484424.1 | DsbA family protein | - |
| HW01_RS26345 () | 5529336..5529554 | - | 219 | WP_019484423.1 | hypothetical protein | - |
| HW01_RS26360 () | 5531695..5532126 | + | 432 | WP_019484422.1 | TIGR03757 family integrating conjugative element protein | - |
| HW01_RS26365 () | 5532126..5533064 | + | 939 | WP_019484421.1 | TIGR03756 family integrating conjugative element protein | - |
| HW01_RS26370 () | 5533082..5534464 | + | 1383 | WP_023101466.1 | integrating conjugative element protein | - |
| HW01_RS26375 () | 5534464..5534811 | + | 348 | WP_012076881.1 | hypothetical protein | - |
| HW01_RS26380 () | 5534808..5536319 | + | 1512 | WP_019484419.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HW01_RS32430 () | 5536357..5536710 | - | 354 | WP_134249957.1 | hypothetical protein | - |
| HW01_RS26385 () | 5536826..5537098 | + | 273 | WP_003111730.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HW01_RS26390 () | 5537102..5537455 | + | 354 | WP_003111729.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HW01_RS26395 () | 5537482..5538396 | - | 915 | WP_003119431.1 | hypothetical protein | - |
| HW01_RS26400 () | 5538422..5538661 | - | 240 | WP_010792230.1 | hypothetical protein | - |
| HW01_RS32435 () | 5540072..5540326 | + | 255 | WP_123906486.1 | hypothetical protein | - |
| HW01_RS26410 () | 5540345..5542264 | + | 1920 | WP_023101468.1 | helicase/relaxase domain-containing protein | - |
| HW01_RS26415 () | 5542261..5543541 | + | 1281 | WP_023101469.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HW01_RS26435 () | 5544394..5546958 | - | 2565 | WP_003145976.1 | ATP-dependent chaperone ClpB | - |
| HW01_RS26440 () | 5547114..5547842 | - | 729 | WP_003102588.1 | peptidoglycan editing factor PgeF | - |
| HW01_RS26445 () | 5547839..5548801 | - | 963 | WP_003094686.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|