Detailed information of TA system TA047792

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): PumAB/COG3657-dnstrm_HI1420
• Location: 5483742..5484328
• Replicon: chromosome
• Accession: NZ_CP008866
• Organism: Pseudomonas aeruginosa strain T38079

Toxin (Protein)

• Gene name: PumA
• Uniprot ID: G8CP73
• Locus tag: HW01_RS26055
• Protein ID: WP_003120987.1
• Coordinates: 5484029..5484328 (-)
• Length: 100 a.a.

Antitoxin (Protein)

• Gene name: PumB
• Uniprot ID: -
• Locus tag: HW01_RS26050
• Protein ID: WP_003448662.1
• Coordinates: 5483742..5484032 (-)
• Length: 97 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
HW01_RS26030	5478893..5479102	+	210	WP_003105733.1	cold-shock protein	-
HW01_RS26035	5479324..5481213	+	1890	WP_016851610.1	hypothetical protein	-
HW01_RS26040	5481210..5483186	+	1977	WP_016851611.1	DEAD/DEAH box helicase	-
HW01_RS26045	5483327..5483671	+	345	WP_016851612.1	hypothetical protein	-
HW01_RS26050	5483742..5484032	-	291	WP_003448662.1	putative addiction module antidote protein	Antitoxin
HW01_RS26055	5484029..5484328	-	300	WP_003120987.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
HW01_RS26060	5484530..5485654	+	1125	WP_012076859.1	TcpQ domain-containing protein	-
HW01_RS26065	5485654..5487363	+	1710	WP_012076860.1	PilN family type IVB pilus formation outer membrane protein	-
HW01_RS26070	5487367..5488692	+	1326	WP_003099758.1	type 4b pilus protein PilO2	-
HW01_RS26075	5488682..5489215	+	534	WP_003099760.1	type IV pilus biogenesis protein PilP	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Integrative and Conjugative Element	-	-	5456109..5543956	87847

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Addiction module killer protein, predicted (3-96)

Antitoxin

• Cro/C1-type helix-turn-helix domain (47-90)

Sequences

Toxin

Protein

• Length: 100 a.a.
• Molecular weight: 11133.88 Da
• Isoelectric Point: 10.4495

>T47792 WP_003120987.1 NZ_CP008866:c5484328-5484029 [Pseudomonas aeruginosa]
MVEVKQTATFMAWESKLKDRRAKAVIAARIFRLANGLPGDVSPVGQGVSELRIHYGPGYRVYFQQRGTEIVILLCGGDKS
SQARDIEMAKRLANEWRPQ

Nucleotide

• Length: 300 bp

>T47792 NZ_CP008866:c5484328-5484029 [Pseudomonas aeruginosa]
ATGGTCGAAGTCAAACAAACCGCCACTTTCATGGCATGGGAAAGCAAGCTAAAGGATCGGCGGGCAAAGGCCGTGATCGC
CGCCCGTATCTTCCGATTGGCGAATGGACTACCCGGCGATGTGTCACCAGTCGGCCAGGGTGTGAGCGAGTTGAGGATTC
ACTATGGCCCAGGCTATCGGGTGTACTTCCAGCAGCGCGGGACGGAAATCGTCATCCTGCTATGTGGTGGAGACAAGAGC
AGCCAGGCCAGGGATATAGAAATGGCGAAACGCCTGGCAAATGAGTGGAGGCCGCAATGA

Antitoxin

Protein

• Length: 97 a.a.
• Molecular weight: 10394.91 Da
• Isoelectric Point: 4.7527

>AT47792 WP_003448662.1 NZ_CP008866:c5484032-5483742 [Pseudomonas aeruginosa]
MTEQIYDYDPAQALDSPEAMALFIADALDTGDTAYIAKAMGVVARAKGMTELAKETGLAREQLYKSFSERGNPTLKTMLA
VMRALGVDLTARPHAQ

Nucleotide

• Length: 291 bp

>AT47792 NZ_CP008866:c5484032-5483742 [Pseudomonas aeruginosa]
ATGACCGAGCAAATTTATGATTATGACCCCGCGCAAGCGCTGGACAGCCCGGAGGCCATGGCTCTGTTCATCGCAGACGC
TTTGGATACTGGAGACACCGCCTATATCGCTAAGGCTATGGGAGTCGTGGCCCGCGCCAAGGGGATGACGGAGTTGGCCA
AGGAAACGGGTTTGGCCAGGGAGCAGCTTTACAAATCGTTTAGTGAGCGCGGGAACCCTACATTGAAAACCATGCTGGCA
GTAATGCGAGCTCTGGGAGTTGATCTGACCGCCCGCCCGCATGCTCAGTGA

Structures

Toxin

• AlphaFold DB: G8CP73