MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 103238 bp
Accession: NZ_CP008860 Location: 5258436..5361673 Organism: Pseudomonas aeruginosa strain H27930 Replicon: chromosome
Accession: NZ_CP008860 Location: 5258436..5361673 Organism: Pseudomonas aeruginosa strain H27930 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW06_RS24700 () | 5254008..5258207 | + | 4200 | WP_059309628.1 | two-partner secretion system exoprotein TpsA4 | - |
| HW06_RS24710 () | 5258573..5259433 | + | 861 | WP_003158180.1 | ParA family protein | - |
| HW06_RS24715 () | 5259435..5260160 | + | 726 | WP_003103853.1 | hypothetical protein | - |
| HW06_RS24720 () | 5260157..5260654 | + | 498 | WP_003103852.1 | hypothetical protein | - |
| HW06_RS24725 () | 5260660..5261406 | + | 747 | WP_003159720.1 | hypothetical protein | - |
| HW06_RS24730 () | 5261403..5262089 | + | 687 | WP_003159719.1 | Lar family restriction alleviation protein | - |
| HW06_RS24735 () | 5262089..5262790 | + | 702 | WP_003103849.1 | DUF2786 domain-containing protein | - |
| HW06_RS24740 () | 5262787..5263494 | + | 708 | WP_003103848.1 | HNH endonuclease | - |
| HW06_RS24745 () | 5263478..5263696 | + | 219 | WP_003103847.1 | hypothetical protein | - |
| HW06_RS24750 () | 5263693..5265036 | + | 1344 | WP_003103846.1 | replicative DNA helicase | - |
| HW06_RS31300 () | 5265475..5265921 | - | 447 | WP_016561619.1 | hypothetical protein | - |
| HW06_RS24760 () | 5266099..5266284 | + | 186 | WP_003103845.1 | hypothetical protein | - |
| HW06_RS24765 () | 5266274..5266801 | + | 528 | WP_003103844.1 | hypothetical protein | - |
| HW06_RS24770 () | 5266798..5267055 | + | 258 | WP_003103843.1 | hypothetical protein | - |
| HW06_RS31090 () | 5267048..5267545 | + | 498 | WP_003125258.1 | hypothetical protein | - |
| HW06_RS24780 () | 5267538..5267771 | + | 234 | WP_003103841.1 | hypothetical protein | - |
| HW06_RS24785 () | 5267771..5268787 | + | 1017 | WP_003158179.1 | nucleoid-associated protein YejK | - |
| HW06_RS24790 () | 5268790..5269038 | + | 249 | WP_003111972.1 | Arc family DNA-binding protein | - |
| HW06_RS24795 () | 5269035..5270768 | + | 1734 | WP_003158178.1 | ParB family protein | - |
| HW06_RS24800 () | 5270796..5271551 | + | 756 | WP_003125263.1 | DUF2857 domain-containing protein | - |
| HW06_RS24805 () | 5271554..5272879 | + | 1326 | WP_079760336.1 | hypothetical protein | - |
| HW06_RS24815 () | 5273507..5273704 | + | 198 | WP_003105756.1 | hypothetical protein | - |
| HW06_RS24820 () | 5273860..5274588 | + | 729 | WP_003105754.1 | TIGR03761 family integrating conjugative element protein | - |
| HW06_RS24825 () | 5274594..5275142 | + | 549 | WP_003105753.1 | DUF3158 family protein | - |
| HW06_RS24830 () | 5275189..5276028 | + | 840 | WP_003105750.1 | Rha family transcriptional regulator | - |
| HW06_RS24835 () | 5276058..5276546 | + | 489 | WP_003105748.1 | single-stranded DNA-binding protein | - |
| HW06_RS24840 () | 5276654..5276899 | + | 246 | WP_023102333.1 | CrpP family protein | - |
| HW06_RS24845 () | 5276965..5277183 | - | 219 | WP_003105747.1 | hypothetical protein | - |
| HW06_RS24855 () | 5277383..5277643 | - | 261 | WP_003105742.1 | hypothetical protein | - |
| HW06_RS24860 () | 5277665..5278075 | - | 411 | WP_003105740.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| HW06_RS24865 () | 5278075..5278305 | - | 231 | WP_003158175.1 | antitoxin | Antitoxin Detail |
| HW06_RS24870 () | 5278561..5280480 | + | 1920 | WP_004352838.1 | type I DNA topoisomerase | - |
| HW06_RS24875 () | 5280788..5280997 | + | 210 | WP_003105733.1 | cold-shock protein | - |
| HW06_RS24880 () | 5281218..5283107 | + | 1890 | WP_059309629.1 | hypothetical protein | - |
| HW06_RS24885 () | 5283104..5285077 | + | 1974 | WP_059309630.1 | DEAD/DEAH box helicase | - |
| HW06_RS24890 () | 5285199..5285981 | + | 783 | WP_015060166.1 | phage Gp37/Gp68 family protein | - |
| HW06_RS24895 () | 5286014..5287267 | + | 1254 | WP_004352835.1 | three-Cys-motif partner protein TcmP | - |
| HW06_RS24900 () | 5287441..5288565 | + | 1125 | WP_003099755.1 | hypothetical protein | VF |
| HW06_RS24905 () | 5288565..5290274 | + | 1710 | WP_003099757.1 | Outer membrane lipoprotein BfpB | VF |
| HW06_RS24910 () | 5290278..5291603 | + | 1326 | WP_003099758.1 | type 4b pilus protein PilO2 | - |
| HW06_RS24915 () | 5291593..5292126 | + | 534 | WP_003099760.1 | type IV pilus biogenesis protein PilP | - |
| HW06_RS24920 () | 5292135..5293715 | + | 1581 | WP_015060168.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| HW06_RS24925 () | 5293715..5294794 | + | 1080 | WP_003109360.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| HW06_RS24930 () | 5294816..5295346 | + | 531 | WP_003099765.1 | hypothetical protein | VF |
| HW06_RS24935 () | 5295343..5296284 | + | 942 | WP_003109361.1 | Flp pilus assembly complex ATPase component TadA | - |
| HW06_RS24940 () | 5296289..5297617 | + | 1329 | WP_003109362.1 | hypothetical protein | VF |
| HW06_RS24945 () | 5297646..5298083 | + | 438 | WP_003109363.1 | hypothetical protein | VF |
| HW06_RS24955 () | 5299006..5299395 | + | 390 | WP_003109365.1 | hypothetical protein | - |
| HW06_RS24960 () | 5299468..5299647 | + | 180 | WP_004347955.1 | hypothetical protein | - |
| HW06_RS24965 () | 5300107..5300586 | + | 480 | WP_003109367.1 | DUF3577 domain-containing protein | - |
| HW06_RS31305 () | 5300724..5300882 | + | 159 | WP_003109368.1 | hypothetical protein | - |
| HW06_RS24970 () | 5300956..5301153 | + | 198 | WP_003109369.1 | hypothetical protein | - |
| HW06_RS24980 () | 5301639..5302346 | + | 708 | WP_003456317.1 | hypothetical protein | - |
| HW06_RS24985 () | 5302582..5302932 | + | 351 | WP_003109371.1 | hypothetical protein | - |
| HW06_RS24990 () | 5302989..5303780 | + | 792 | WP_003109372.1 | DUF3275 family protein | - |
| HW06_RS24995 () | 5303883..5304245 | + | 363 | WP_003159706.1 | hypothetical protein | - |
| HW06_RS25000 () | 5304313..5304567 | + | 255 | WP_003125295.1 | hypothetical protein | - |
| HW06_RS25005 () | 5304659..5305264 | + | 606 | WP_003125296.1 | hypothetical protein | - |
| HW06_RS25010 () | 5305294..5306739 | + | 1446 | WP_003125297.1 | class I SAM-dependent methyltransferase | - |
| HW06_RS25015 () | 5306844..5309093 | + | 2250 | WP_003159705.1 | DEAD/DEAH box helicase | - |
| HW06_RS25020 () | 5309195..5309497 | - | 303 | WP_017002261.1 | hypothetical protein | - |
| HW06_RS25025 () | 5309674..5310345 | - | 672 | WP_016561615.1 | DsbA family oxidoreductase | - |
| HW06_RS25030 () | 5310398..5310739 | - | 342 | WP_003125308.1 | carboxymuconolactone decarboxylase family protein | - |
| HW06_RS25035 () | 5310834..5311394 | - | 561 | WP_015060170.1 | HTH-type transcriptional regulator CymR | VF |
| HW06_RS25040 () | 5311457..5312242 | - | 786 | WP_003125309.1 | 3-alpha-hydroxycholanate dehydrogenase (NADP(+)) | VF |
| HW06_RS25045 () | 5312398..5312811 | - | 414 | WP_015060171.1 | hypothetical protein | - |
| HW06_RS25050 () | 5312804..5313364 | - | 561 | WP_003125311.1 | hypothetical protein | - |
| HW06_RS25055 () | 5313936..5314208 | - | 273 | WP_003125312.1 | hypothetical protein | - |
| HW06_RS25060 () | 5314426..5315118 | + | 693 | WP_003123350.1 | hypothetical protein | - |
| HW06_RS25065 () | 5315129..5315884 | + | 756 | WP_003125319.1 | TIGR03759 family integrating conjugative element protein | - |
| HW06_RS25070 () | 5315869..5316450 | + | 582 | WP_003123352.1 | hypothetical protein | VF |
| HW06_RS25075 () | 5316447..5316947 | + | 501 | WP_059309631.1 | integrating conjugative element protein | - |
| HW06_RS25080 () | 5317019..5317225 | + | 207 | WP_073689213.1 | hypothetical protein | - |
| HW06_RS25085 () | 5317229..5319460 | + | 2232 | WP_003159694.1 | type IV conjugative transfer system coupling protein TraD | - |
| HW06_RS25090 () | 5319460..5320206 | + | 747 | WP_003159693.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| HW06_RS25095 () | 5320217..5321698 | + | 1482 | WP_003109390.1 | UvrD-helicase domain-containing protein | - |
| HW06_RS31310 () | 5321830..5322939 | + | 1110 | WP_186278398.1 | hypothetical protein | - |
| HW06_RS25105 () | 5322984..5323295 | - | 312 | WP_003109392.1 | DUF2845 domain-containing protein | - |
| HW06_RS25110 () | 5323468..5323767 | + | 300 | WP_003125328.1 | hypothetical protein | - |
| HW06_RS25115 () | 5323861..5324199 | + | 339 | WP_016561610.1 | RAQPRD family integrative conjugative element protein | - |
| HW06_RS25120 () | 5324196..5324435 | + | 240 | WP_003125330.1 | TIGR03758 family integrating conjugative element protein | - |
| HW06_RS25125 () | 5324453..5324809 | + | 357 | WP_003159691.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| HW06_RS25130 () | 5324820..5325206 | + | 387 | WP_003125333.1 | TIGR03750 family conjugal transfer protein | - |
| HW06_RS25135 () | 5325203..5325862 | + | 660 | WP_003158155.1 | TIGR03746 family integrating conjugative element protein | - |
| HW06_RS25140 () | 5325859..5326743 | + | 885 | WP_003125336.1 | TIGR03749 family integrating conjugative element protein | - |
| HW06_RS25145 () | 5326727..5328232 | + | 1506 | WP_059309632.1 | TIGR03752 family integrating conjugative element protein | - |
| HW06_RS25150 () | 5328210..5328653 | + | 444 | WP_003125338.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| HW06_RS25155 () | 5328653..5331595 | + | 2943 | WP_015060177.1 | conjugative transfer ATPase | - |
| HW06_RS25160 () | 5331592..5331876 | + | 285 | WP_003158152.1 | hypothetical protein | - |
| HW06_RS25165 () | 5331873..5332529 | + | 657 | WP_003158151.1 | DsbA family protein | - |
| HW06_RS25170 () | 5332526..5332744 | - | 219 | WP_003158150.1 | hypothetical protein | - |
| HW06_RS25180 () | 5333303..5334490 | + | 1188 | WP_003159689.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| HW06_RS25185 () | 5334513..5334935 | + | 423 | WP_003125089.1 | DUF1641 domain-containing protein | - |
| HW06_RS25190 () | 5334925..5335791 | + | 867 | WP_003158148.1 | methyltransferase domain-containing protein | - |
| HW06_RS25195 () | 5335929..5336360 | + | 432 | WP_003158147.1 | TIGR03757 family integrating conjugative element protein | - |
| HW06_RS25200 () | 5336360..5337298 | + | 939 | WP_003159688.1 | TIGR03756 family integrating conjugative element protein | - |
| HW06_RS25205 () | 5337316..5338698 | + | 1383 | WP_003159687.1 | integrating conjugative element protein | - |
| HW06_RS25210 () | 5338698..5339045 | + | 348 | WP_003125096.1 | hypothetical protein | - |
| HW06_RS25215 () | 5339042..5340577 | + | 1536 | WP_003158144.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HW06_RS25220 () | 5340607..5340960 | - | 354 | WP_003158143.1 | hypothetical protein | - |
| HW06_RS25225 () | 5341079..5341351 | + | 273 | WP_003086148.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HW06_RS25230 () | 5341355..5341705 | + | 351 | WP_003125102.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HW06_RS25235 () | 5342083..5350597 | - | 8515 | Protein_4882 | Cyclic beta-(1,2)-glucan synthase NdvB | VF |
| HW06_RS25240 () | 5351162..5351425 | + | 264 | WP_003125104.1 | hypothetical protein | - |
| HW06_RS25245 () | 5351439..5351663 | + | 225 | WP_003456722.1 | DUF1652 domain-containing protein | - |
| HW06_RS25250 () | 5351878..5352597 | + | 720 | WP_009875850.1 | Crp/Fnr family transcriptional regulator | - |
| HW06_RS25255 () | 5352668..5353030 | + | 363 | WP_003125106.1 | hypothetical protein | - |
| HW06_RS25260 () | 5353134..5353628 | + | 495 | WP_003158140.1 | hypothetical protein | - |
| HW06_RS25265 () | 5353737..5355755 | + | 2019 | WP_003125107.1 | class I SAM-dependent methyltransferase | - |
| HW06_RS25270 () | 5355911..5357104 | - | 1194 | WP_003158139.1 | fatty acid desaturase | - |
| HW06_RS31315 () | 5357492..5357848 | + | 357 | WP_015060180.1 | hypothetical protein | - |
| HW06_RS31320 () | 5357909..5358061 | - | 153 | WP_153274499.1 | hypothetical protein | - |
| HW06_RS25275 () | 5358060..5359979 | + | 1920 | WP_003158138.1 | helicase/relaxase domain-containing protein | - |
| HW06_RS25280 () | 5359976..5361259 | + | 1284 | WP_003158137.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HW06_RS25300 () | 5362111..5364675 | - | 2565 | WP_003094682.1 | ATP-dependent chaperone ClpB | - |
| HW06_RS25305 () | 5364831..5365559 | - | 729 | WP_003102588.1 | peptidoglycan editing factor PgeF | - |
| HW06_RS25310 () | 5365556..5366518 | - | 963 | WP_003094686.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|