MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 57521 bp
Accession: NZ_CP008743 Location: 1026016..1083536 Organism: Candidatus Nucleicultrix amoebiphila FS5 Replicon: chromosome
Accession: NZ_CP008743 Location: 1026016..1083536 Organism: Candidatus Nucleicultrix amoebiphila FS5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GQ61_RS04910 () | 1022114..1023043 | + | 930 | WP_198157271.1 | DMT family transporter | - |
| GQ61_RS04915 () | 1023040..1023624 | + | 585 | WP_085784247.1 | 2OG-Fe(II) oxygenase | - |
| GQ61_RS04920 () | 1023621..1024523 | - | 903 | WP_085784248.1 | LysR family transcriptional regulator | - |
| GQ61_RS04925 () | 1025039..1025257 | + | 219 | WP_085784249.1 | helix-turn-helix domain-containing protein | - |
| GQ61_RS04930 () | 1025268..1026374 | + | 1107 | WP_085784250.1 | hypothetical protein | - |
| GQ61_RS04935 () | 1026371..1026673 | + | 303 | WP_085784251.1 | hypothetical protein | - |
| GQ61_RS04940 () | 1026673..1026972 | + | 300 | WP_085784252.1 | type IV conjugative transfer system protein TraL | - |
| GQ61_RS04945 () | 1026969..1027526 | + | 558 | WP_085784253.1 | hypothetical protein | - |
| GQ61_RS04950 () | 1027519..1028178 | + | 660 | WP_198157272.1 | type-F conjugative transfer system secretin TraK | - |
| GQ61_RS04955 () | 1028191..1028484 | + | 294 | WP_085784255.1 | hypothetical protein | - |
| GQ61_RS04960 () | 1028489..1029784 | + | 1296 | WP_085784256.1 | TraB/VirB10 family protein | - |
| GQ61_RS04965 () | 1029781..1030011 | + | 231 | WP_085784257.1 | hypothetical protein | - |
| GQ61_RS04970 () | 1030015..1032591 | + | 2577 | WP_085784258.1 | type IV secretion system protein TraC | - |
| GQ61_RS04975 () | 1032588..1033202 | + | 615 | WP_085784259.1 | type-F conjugative transfer system protein TraW | - |
| GQ61_RS04980 () | 1033199..1034167 | + | 969 | WP_085784260.1 | TraU family protein | - |
| GQ61_RS04985 () | 1034183..1034845 | + | 663 | WP_085784261.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| GQ61_RS04990 () | 1034842..1035345 | + | 504 | WP_085784262.1 | hypothetical protein | VF |
| GQ61_RS04995 () | 1035342..1037066 | + | 1725 | WP_085784263.1 | conjugal transfer protein TraN | - |
| GQ61_RS05000 () | 1037050..1037835 | + | 786 | WP_198157273.1 | conjugal transfer protein TraF | - |
| GQ61_RS05005 () | 1037900..1039144 | + | 1245 | WP_198157274.1 | conjugal transfer protein TraH | - |
| GQ61_RS05010 () | 1039160..1041907 | + | 2748 | WP_085784266.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| GQ61_RS05015 () | 1041910..1042455 | - | 546 | WP_085784267.1 | hypothetical protein | - |
| GQ61_RS05020 () | 1042678..1044504 | + | 1827 | WP_085784268.1 | type IV conjugative transfer system coupling protein TraD | - |
| GQ61_RS05025 () | 1044578..1045609 | + | 1032 | WP_085784269.1 | DUF1016 family protein | - |
| GQ61_RS05030 () | 1045646..1046047 | + | 402 | WP_085784270.1 | hypothetical protein | - |
| GQ61_RS05035 () | 1046170..1046853 | - | 684 | WP_085784271.1 | serine protease | - |
| GQ61_RS05040 () | 1046878..1050075 | - | 3198 | WP_085784272.1 | AAA family ATPase | - |
| GQ61_RS05045 () | 1050251..1050724 | + | 474 | WP_085784273.1 | conjugal transfer protein TraD | - |
| GQ61_RS05050 () | 1050766..1051023 | - | 258 | WP_085784274.1 | hypothetical protein | - |
| GQ61_RS05055 () | 1051072..1051227 | + | 156 | WP_157111147.1 | hypothetical protein | - |
| GQ61_RS09170 () | 1051434..1051529 | + | 96 | WP_198157275.1 | hypothetical protein | - |
| GQ61_RS05060 () | 1051622..1053745 | + | 2124 | WP_198157276.1 | cadmium-translocating P-type ATPase | - |
| GQ61_RS05065 () | 1053767..1054003 | + | 237 | WP_085784277.1 | hypothetical protein | - |
| GQ61_RS05070 () | 1054508..1054915 | - | 408 | WP_085784278.1 | DUF2703 domain-containing protein | - |
| GQ61_RS05075 () | 1055355..1055687 | + | 333 | WP_198157277.1 | winged helix-turn-helix domain-containing protein | - |
| GQ61_RS09175 () | 1055772..1055921 | + | 150 | WP_157111149.1 | hypothetical protein | - |
| GQ61_RS05080 () | 1055975..1056367 | - | 393 | WP_085784280.1 | DUF302 domain-containing protein | - |
| GQ61_RS05085 () | 1056401..1056808 | - | 408 | WP_085784281.1 | hypothetical protein | - |
| GQ61_RS05090 () | 1056998..1057471 | + | 474 | WP_085784282.1 | conjugal transfer protein TraD | - |
| GQ61_RS05095 () | 1057641..1057925 | - | 285 | WP_085784283.1 | cation transporter | - |
| GQ61_RS05100 () | 1057947..1058294 | - | 348 | WP_085784284.1 | mercury transporter MerT | - |
| GQ61_RS05105 () | 1058284..1058706 | - | 423 | WP_085784285.1 | heavy metal-responsive transcriptional regulator | - |
| GQ61_RS05110 () | 1058721..1059089 | - | 369 | WP_085784286.1 | carboxymuconolactone decarboxylase family protein | - |
| GQ61_RS05115 () | 1059238..1060494 | + | 1257 | WP_085784287.1 | efflux RND transporter periplasmic adaptor subunit | - |
| GQ61_RS05120 () | 1060475..1060825 | + | 351 | WP_085784288.1 | copper-binding protein | - |
| GQ61_RS05125 () | 1060844..1063990 | + | 3147 | WP_085784289.1 | efflux RND transporter permease subunit | - |
| GQ61_RS05130 () | 1063997..1065160 | - | 1164 | WP_085784290.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| GQ61_RS05135 () | 1066362..1066652 | + | 291 | WP_085784291.1 | hypothetical protein | - |
| GQ61_RS05140 () | 1066923..1067735 | + | 813 | WP_085784292.1 | hypothetical protein | - |
| GQ61_RS05145 () | 1067787..1068869 | - | 1083 | WP_085784293.1 | ATP-dependent 6-phosphofructokinase | - |
| GQ61_RS05150 () | 1068995..1069195 | + | 201 | WP_085784294.1 | YdcH family protein | - |
| GQ61_RS05155 () | 1069257..1069577 | + | 321 | WP_085784295.1 | thioredoxin | - |
| GQ61_RS05160 () | 1069606..1071411 | + | 1806 | WP_085784296.1 | class I poly(R)-hydroxyalkanoic acid synthase | - |
| GQ61_RS05165 () | 1071459..1073591 | + | 2133 | WP_085784297.1 | GHKL domain-containing protein | - |
| GQ61_RS05170 () | 1073676..1075472 | + | 1797 | WP_085784298.1 | aminopeptidase P family protein | - |
| GQ61_RS05175 () | 1075469..1076653 | - | 1185 | WP_085784299.1 | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase | - |
| GQ61_RS05180 () | 1076765..1077067 | + | 303 | WP_085784300.1 | type II toxin-antitoxin system HigB family toxin | - |
| GQ61_RS05185 () | 1077057..1077461 | + | 405 | WP_085784301.1 | hypothetical protein | - |
| GQ61_RS05190 () | 1077561..1077887 | - | 327 | WP_085784302.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| GQ61_RS05195 () | 1077881..1078132 | - | 252 | WP_085784303.1 | hypothetical protein | Antitoxin Detail |
| GQ61_RS05200 () | 1078383..1078694 | + | 312 | WP_085784304.1 | HigA family addiction module antidote protein | - |
| GQ61_RS05205 () | 1078691..1080337 | + | 1647 | WP_085784305.1 | STAS domain-containing protein | - |
| GQ61_RS05210 () | 1080360..1080887 | - | 528 | WP_085785070.1 | demethoxyubiquinone hydroxylase family protein | - |
| GQ61_RS05215 () | 1080896..1081375 | - | 480 | WP_198157278.1 | disulfide bond formation protein B | - |
| GQ61_RS05220 () | 1081396..1081977 | - | 582 | WP_085784307.1 | DedA family protein | - |
| GQ61_RS05225 () | 1082175..1083326 | - | 1152 | WP_085784308.1 | ATP-binding protein | - |
| GQ61_RS05230 () | 1083538..1083906 | + | 369 | WP_085784309.1 | DUF983 domain-containing protein | - |
| GQ61_RS05235 () | 1083980..1084519 | + | 540 | WP_085784310.1 | DUF1013 domain-containing protein | - |
| GQ61_RS05240 () | 1084556..1085713 | + | 1158 | WP_085784311.1 | phosphoglycerate kinase | - |
| GQ61_RS05245 () | 1085763..1086641 | + | 879 | WP_085784312.1 | alpha/beta hydrolase | - |
| GQ61_RS05250 () | 1086643..1087293 | - | 651 | WP_085784313.1 | lipoyl(octanoyl) transferase LipB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|