MGE detailed information
MGE type: Genomic_island MGE length: 21115 bp
Accession: NZ_CP008696 Location: 6063232..6084346 Organism: Pseudomonas chlororaphis strain PA23 Replicon: chromosome
Accession: NZ_CP008696 Location: 6063232..6084346 Organism: Pseudomonas chlororaphis strain PA23 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EY04_RS26985 () | 6058754..6061258 | - | 2505 | WP_051673169.1 | fimbria/pilus outer membrane usher protein | - |
| EY04_RS26990 () | 6061321..6062055 | - | 735 | WP_080710611.1 | fimbria/pilus periplasmic chaperone | - |
| EY04_RS26995 () | 6062320..6062946 | - | 627 | WP_144241862.1 | hypothetical protein | - |
| EY04_RS27000 () | 6063241..6063771 | - | 531 | WP_038635365.1 | hypothetical protein | - |
| EY04_RS27005 () | 6064369..6064836 | - | 468 | WP_051673170.1 | antitoxin | - |
| EY04_RS27015 () | 6066213..6066410 | + | 198 | WP_038635371.1 | hypothetical protein | VF |
| EY04_RS27020 () | 6066518..6066949 | - | 432 | WP_038635374.1 | hypothetical protein | - |
| EY04_RS27025 () | 6066951..6067547 | - | 597 | WP_144241863.1 | pathogenicity island effector protein | - |
| EY04_RS27030 () | 6067562..6069049 | - | 1488 | WP_038635377.1 | type III secretion system translocon subunit SctE | - |
| EY04_RS27035 () | 6069046..6069531 | - | 486 | WP_038635380.1 | hypothetical protein | VF |
| EY04_RS27040 () | 6069725..6070084 | - | 360 | WP_038635382.1 | hypothetical protein | - |
| EY04_RS27045 () | 6070109..6070573 | - | 465 | WP_051673172.1 | hypothetical protein | - |
| EY04_RS31920 () | 6071010..6071735 | + | 726 | WP_051673173.1 | AraC family transcriptional regulator | - |
| EY04_RS27055 () | 6071742..6071957 | + | 216 | WP_038635385.1 | hypothetical protein | VF |
| EY04_RS31925 () | 6071954..6072262 | + | 309 | WP_051673174.1 | hypothetical protein | VF |
| EY04_RS27065 () | 6072271..6072603 | + | 333 | WP_038635388.1 | hypothetical protein | VF |
| EY04_RS27070 () | 6072600..6073334 | + | 735 | WP_200877279.1 | Yop proteins translocation lipoprotein J | VF |
| EY04_RS27075 () | 6073331..6073921 | + | 591 | WP_038635390.1 | hypothetical protein | - |
| EY04_RS33515 () | 6073918..6074685 | + | 768 | WP_051673175.1 | hypothetical protein | - |
| EY04_RS27085 () | 6074678..6075643 | + | 966 | WP_158484770.1 | type III secretion system gatekeeper subunit SctW | - |
| EY04_RS27090 () | 6075681..6076118 | + | 438 | WP_051673177.1 | hypothetical protein | VF |
| EY04_RS27095 () | 6076259..6077311 | + | 1053 | WP_038635400.1 | hypothetical protein | VF |
| EY04_RS27100 () | 6077629..6077856 | + | 228 | WP_038635403.1 | CopG family transcriptional regulator | Antitoxin Detail |
| EY04_RS27105 () | 6077840..6078106 | + | 267 | WP_038635405.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| EY04_RS32765 () | 6078393..6078536 | - | 144 | Protein_5428 | transposase domain-containing protein | - |
| EY04_RS32770 () | 6078732..6079707 | - | 976 | Protein_5429 | IS3 family transposase ISRso10 | Transposase |
| EY04_RS27120 () | 6080689..6082545 | + | 1857 | WP_144241864.1 | hypothetical protein | - |
| EY04_RS27125 () | 6082849..6083106 | - | 258 | WP_038635415.1 | hypothetical protein | VF |
| EY04_RS27130 () | 6083132..6084343 | - | 1212 | WP_038636899.1 | type III secretion system inner membrane ring subunit SctD | - |
| EY04_RS27135 () | 6084350..6085810 | - | 1461 | WP_200877280.1 | EscC/YscC/HrcC family type III secretion system outer membrane ring protein | - |
| EY04_RS27140 () | 6085840..6086070 | - | 231 | WP_144241865.1 | hypothetical protein | - |
| EY04_RS27145 () | 6086384..6087034 | + | 651 | WP_051673180.1 | two component system response regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|