MGE detailed information
MGE type: Prophage MGE length: 67736 bp
Accession: NZ_CP007557 Location: 4121069..4188804 Organism: Citrobacter freundii CFNIH1 Replicon: chromosome
Accession: NZ_CP007557 Location: 4121069..4188804 Organism: Citrobacter freundii CFNIH1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFNIH1_RS19665 () | 4116340..4118388 | - | 2049 | WP_038641299.1 | carboxy terminal-processing peptidase | - |
| CFNIH1_RS19670 () | 4118408..4119094 | - | 687 | WP_003833781.1 | RNA chaperone ProQ | - |
| CFNIH1_RS19675 () | 4119191..4119688 | - | 498 | WP_038641301.1 | GAF domain-containing protein | - |
| CFNIH1_RS19680 () | 4119817..4121100 | + | 1284 | WP_038641303.1 | membrane integrity lipid transport subunit YebS | - |
| CFNIH1_RS19685 () | 4121069..4123702 | + | 2634 | WP_038641305.1 | hypothetical protein | VF |
| CFNIH1_RS19690 () | 4123815..4125203 | + | 1389 | WP_038643223.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CFNIH1_RS19695 () | 4125304..4125540 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| CFNIH1_RS19700 () | 4125643..4125834 | + | 192 | WP_032939629.1 | YebW family protein | - |
| CFNIH1_RS19705 () | 4125835..4126476 | - | 642 | WP_038641307.1 | protein-serine/threonine phosphatase | - |
| CFNIH1_RS19710 () | 4126550..4127830 | - | 1281 | WP_038641309.1 | hypothetical protein | - |
| CFNIH1_RS19720 () | 4128692..4129558 | - | 867 | WP_051594522.1 | putative cyclic di-GMP phosphodiesterase PdeB | VF |
| CFNIH1_RS19725 () | 4129633..4130330 | - | 698 | Protein_3892 | IS1 family transposase IS1X2 | Transposase |
| CFNIH1_RS19730 () | 4130387..4131028 | - | 642 | Protein_3893 | CSS-motif domain-containing protein | - |
| CFNIH1_RS28245 () | 4131203..4131441 | + | 239 | Protein_3894 | DinI-like family protein | - |
| CFNIH1_RS19735 () | 4131722..4132021 | + | 300 | WP_038641313.1 | antibiotic biosynthesis monooxygenase | - |
| CFNIH1_RS19740 () | 4132712..4133323 | + | 612 | WP_038641316.1 | hypothetical protein | - |
| CFNIH1_RS19745 () | 4133377..4133664 | + | 288 | WP_038641317.1 | hypothetical protein | - |
| CFNIH1_RS19750 () | 4133952..4134683 | + | 732 | WP_038641319.1 | HNH endonuclease | - |
| CFNIH1_RS19755 () | 4135597..4136181 | - | 585 | WP_038641321.1 | DUF4376 domain-containing protein | - |
| CFNIH1_RS28250 () | 4136193..4136990 | - | 798 | WP_188048330.1 | ISNCY family transposase KIS | Transposase |
| CFNIH1_RS28255 () | 4136970..4138160 | - | 1191 | Protein_3901 | ISNCY family transposase KIS | Transposase |
| CFNIH1_RS19770 () | 4138202..4141602 | - | 3401 | Protein_3902 | host specificity protein J | - |
| CFNIH1_RS19775 () | 4141731..4142351 | - | 621 | WP_071888148.1 | tail assembly protein | - |
| CFNIH1_RS19780 () | 4142249..4142983 | - | 735 | WP_038641323.1 | C40 family peptidase | - |
| CFNIH1_RS19785 () | 4142995..4143690 | - | 696 | WP_038641325.1 | phage minor tail protein L | - |
| CFNIH1_RS19790 () | 4143699..4144031 | - | 333 | WP_038641327.1 | phage tail protein | - |
| CFNIH1_RS19795 () | 4144032..4147334 | - | 3303 | Protein_3907 | phage tail tape measure protein | - |
| CFNIH1_RS19800 () | 4147334..4147564 | - | 231 | WP_038643231.1 | hypothetical protein | - |
| CFNIH1_RS19805 () | 4147585..4147947 | - | 363 | WP_038641329.1 | phage tail protein | - |
| CFNIH1_RS19810 () | 4148009..4148491 | - | 483 | WP_038641331.1 | major tail shaft subunit | - |
| CFNIH1_RS19815 () | 4148525..4148926 | - | 402 | WP_038641333.1 | HK97 gp10 family phage protein | - |
| CFNIH1_RS19820 () | 4148923..4149312 | - | 390 | WP_038641335.1 | hypothetical protein | - |
| CFNIH1_RS19825 () | 4149281..4149631 | - | 351 | WP_003832373.1 | phage head closure protein | - |
| CFNIH1_RS19830 () | 4149628..4149945 | - | 318 | WP_003832371.1 | head-tail connector protein | - |
| CFNIH1_RS19835 () | 4149926..4150303 | - | 378 | WP_038641337.1 | hypothetical protein | - |
| CFNIH1_RS19840 () | 4150361..4151677 | - | 1317 | WP_051594524.1 | phage major capsid protein | - |
| CFNIH1_RS19845 () | 4151751..4152671 | - | 921 | WP_038641339.1 | S49 family peptidase | - |
| CFNIH1_RS19850 () | 4152709..4153968 | - | 1260 | WP_038641341.1 | phage portal protein | - |
| CFNIH1_RS19860 () | 4154141..4155862 | - | 1722 | WP_038641344.1 | terminase large subunit | - |
| CFNIH1_RS19865 () | 4155862..4156296 | - | 435 | WP_038641346.1 | phage terminase small subunit P27 family | - |
| CFNIH1_RS19870 () | 4156529..4157044 | + | 516 | WP_003841965.1 | hypothetical protein | - |
| CFNIH1_RS27110 () | 4157180..4157542 | - | 363 | WP_003841963.1 | HNH endonuclease | - |
| CFNIH1_RS27115 () | 4157812..4157985 | - | 174 | WP_003841960.1 | addiction module toxin, GnsA/GnsB family | - |
| CFNIH1_RS19885 () | 4158192..4158422 | - | 231 | WP_032941334.1 | hypothetical protein | - |
| CFNIH1_RS27120 () | 4158496..4158684 | - | 189 | WP_072144007.1 | cold-shock protein | - |
| CFNIH1_RS19890 () | 4158695..4158907 | - | 213 | WP_003841958.1 | cold shock protein CspG | - |
| CFNIH1_RS25955 () | 4159283..4159828 | - | 546 | WP_050499177.1 | DUF2514 domain-containing protein | - |
| CFNIH1_RS19900 () | 4159807..4160355 | - | 549 | WP_038641350.1 | lysozyme | - |
| CFNIH1_RS19905 () | 4160327..4160605 | - | 279 | WP_003832349.1 | holin | - |
| CFNIH1_RS19910 () | 4160759..4160947 | - | 189 | WP_038641352.1 | hypothetical protein | - |
| CFNIH1_RS19915 () | 4161092..4161466 | + | 375 | WP_050592505.1 | FlxA-like family protein | - |
| CFNIH1_RS19920 () | 4162221..4162835 | - | 615 | WP_038641354.1 | hypothetical protein | - |
| CFNIH1_RS19925 () | 4162849..4163889 | - | 1041 | WP_038641355.1 | DUF968 domain-containing protein | - |
| CFNIH1_RS19930 () | 4163886..4164245 | - | 360 | WP_038641357.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CFNIH1_RS19935 () | 4164248..4164448 | - | 201 | WP_038641358.1 | hypothetical protein | - |
| CFNIH1_RS27130 () | 4164578..4164823 | - | 246 | WP_071681812.1 | hypothetical protein | - |
| CFNIH1_RS19940 () | 4164869..4165102 | - | 234 | WP_038641360.1 | DinI family protein | - |
| CFNIH1_RS19945 () | 4165389..4166480 | - | 1092 | WP_038641362.1 | permease | - |
| CFNIH1_RS19950 () | 4166581..4166877 | + | 297 | WP_038641364.1 | helix-turn-helix domain-containing protein | - |
| CFNIH1_RS19955 () | 4166945..4167370 | - | 426 | WP_038641366.1 | glutaredoxin-dependent arsenate reductase | - |
| CFNIH1_RS19960 () | 4167383..4168672 | - | 1290 | WP_038641369.1 | arsenite efflux transporter membrane subunit ArsB | - |
| CFNIH1_RS19965 () | 4168719..4170470 | - | 1752 | WP_038641371.1 | arsenite efflux transporter ATPase subunit ArsA | - |
| CFNIH1_RS19970 () | 4170488..4170850 | - | 363 | WP_038641374.1 | arsenite efflux transporter metallochaperone ArsD | - |
| CFNIH1_RS19975 () | 4170898..4171251 | - | 354 | WP_038641375.1 | As(III)-sensing metalloregulatory transcriptional repressor ArsR | - |
| CFNIH1_RS27135 () | 4171375..4172046 | - | 672 | WP_080700412.1 | replication protein | - |
| CFNIH1_RS19985 () | 4172996..4173550 | - | 555 | WP_038643237.1 | hypothetical protein | - |
| CFNIH1_RS27140 () | 4173554..4173766 | - | 213 | WP_003832309.1 | helix-turn-helix transcriptional regulator | - |
| CFNIH1_RS19995 () | 4173872..4174252 | + | 381 | WP_003832307.1 | helix-turn-helix domain-containing protein | - |
| CFNIH1_RS27145 () | 4174628..4174942 | - | 315 | WP_071681809.1 | hypothetical protein | - |
| CFNIH1_RS20015 () | 4176460..4176786 | + | 327 | WP_038643238.1 | Rrf2 family transcriptional regulator | - |
| CFNIH1_RS20020 () | 4176928..4180185 | + | 3258 | WP_038641383.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| CFNIH1_RS20025 () | 4180197..4181282 | + | 1086 | WP_038641385.1 | recombinase RecT | - |
| CFNIH1_RS20030 () | 4181322..4181564 | + | 243 | WP_038641387.1 | DUF4060 family protein | - |
| CFNIH1_RS27155 () | 4181629..4181901 | + | 273 | WP_071888150.1 | excisionase | - |
| CFNIH1_RS20035 () | 4181870..4182955 | + | 1086 | WP_038641389.1 | hypothetical protein ; Integrase | Integrase |
| - () | 4183031..4183171 | + | 141 | - | - | Antitoxin Detail |
| - () | 4183033..4183136 | - | 104 | - | - | Toxin Detail |
| CFNIH1_RS20040 () | 4183292..4183630 | - | 339 | WP_038641391.1 | YebY family protein | - |
| CFNIH1_RS20045 () | 4183651..4184523 | - | 873 | WP_038641393.1 | copper homeostasis membrane protein CopD | - |
| CFNIH1_RS20050 () | 4184527..4184901 | - | 375 | WP_038641395.1 | CopC domain-containing protein YobA | - |
| CFNIH1_RS20055 () | 4185045..4185275 | + | 231 | WP_038641397.1 | DNA polymerase III subunit theta | - |
| CFNIH1_RS20060 () | 4185382..4186038 | + | 657 | WP_038641399.1 | carbon-nitrogen hydrolase family protein | - |
| CFNIH1_RS20065 () | 4186061..4186723 | + | 663 | WP_038641401.1 | exodeoxyribonuclease X | - |
| CFNIH1_RS20070 () | 4186705..4188780 | - | 2076 | WP_129694994.1 | oligopeptidase B | - |
| CFNIH1_RS20075 () | 4188867..4189526 | - | 660 | WP_038641405.1 | tellurite resistance TerB family protein | - |
| CFNIH1_RS20080 () | 4189621..4189974 | - | 354 | WP_038641408.1 | protein YebF | - |
| CFNIH1_RS20085 () | 4190096..4190386 | - | 291 | WP_038641410.1 | DNA damage-inducible protein YebG | - |
| CFNIH1_RS20090 () | 4190519..4191697 | + | 1179 | WP_038641413.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| CFNIH1_RS20095 () | 4191766..4192407 | - | 642 | WP_038641415.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|