Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4183031..4183171 | Replicon | chromosome |
| Accession | NZ_CP007557 | ||
| Organism | Citrobacter freundii CFNIH1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4183033..4183136 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4183031..4183171 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFNIH1_RS20025 | 4180197..4181282 | + | 1086 | WP_038641385.1 | recombinase RecT | - |
| CFNIH1_RS20030 | 4181322..4181564 | + | 243 | WP_038641387.1 | DUF4060 family protein | - |
| CFNIH1_RS27155 | 4181629..4181901 | + | 273 | WP_071888150.1 | excisionase | - |
| CFNIH1_RS20035 | 4181870..4182955 | + | 1086 | WP_038641389.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 4183031..4183171 | + | 141 | - | - | Antitoxin |
| - | 4183033..4183136 | - | 104 | - | - | Toxin |
| CFNIH1_RS20040 | 4183292..4183630 | - | 339 | WP_038641391.1 | YebY family protein | - |
| CFNIH1_RS20045 | 4183651..4184523 | - | 873 | WP_038641393.1 | copper homeostasis membrane protein CopD | - |
| CFNIH1_RS20050 | 4184527..4184901 | - | 375 | WP_038641395.1 | CopC domain-containing protein YobA | - |
| CFNIH1_RS20055 | 4185045..4185275 | + | 231 | WP_038641397.1 | DNA polymerase III subunit theta | - |
| CFNIH1_RS20060 | 4185382..4186038 | + | 657 | WP_038641399.1 | carbon-nitrogen hydrolase family protein | - |
| CFNIH1_RS20065 | 4186061..4186723 | + | 663 | WP_038641401.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4121069..4188804 | 67735 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T46628 NZ_CP007557:c4183136-4183033 [Citrobacter freundii CFNIH1]
GGCAGGGTAACTTAGCCTGCATTTATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTTATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT46628 NZ_CP007557:4183031-4183171 [Citrobacter freundii CFNIH1]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATAAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATAAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
