MGE detailed information
MGE type: Prophage MGE length: 66449 bp
Accession: NZ_CP007390 Location: 4004388..4070836 Organism: Escherichia coli strain ST540 Replicon: chromosome
Accession: NZ_CP007390 Location: 4004388..4070836 Organism: Escherichia coli strain ST540 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CF57_RS19990 () | 4000212..4001114 | + | 903 | WP_000879152.1 | Fe(3+) dicitrate ABC transporter substrate-binding protein FecB | - |
| CF57_RS19995 () | 4001111..4002109 | + | 999 | WP_000125187.1 | iron-dicitrate ABC transporter permease FecC | - |
| CF57_RS20000 () | 4002106..4003062 | + | 957 | WP_000684856.1 | Fe(3+) dicitrate ABC transporter permease subunit FecD | - |
| CF57_RS20005 () | 4003063..4003830 | + | 768 | WP_000175457.1 | Fe(3+) dicitrate ABC transporter ATP-binding protein FecE | - |
| CF57_RS27605 () | 4004388..4004645 | - | 258 | WP_000177057.1 | hypothetical protein | - |
| CF57_RS20015 () | 4004728..4005633 | - | 906 | Protein_3815 | IS3 family transposase IS911 | Transposase |
| CF57_RS20020 () | 4005758..4006192 | + | 435 | WP_001421699.1 | IS66 family transposase ISEc47 | Transposase |
| CF57_RS20025 () | 4006189..4006539 | + | 351 | WP_000624688.1 | IS66 family transposase ISEc47 | Transposase |
| CF57_RS20030 () | 4006570..4008183 | + | 1614 | WP_000080164.1 | IS66 family transposase ISEc47 | Transposase |
| CF57_RS20035 () | 4008210..4009337 | - | 1128 | Protein_3819 | IS30 family transposase IS30D | Transposase |
| CF57_RS20045 () | 4009392..4010089 | + | 698 | Protein_3820 | IS1 family transposase | - |
| CF57_RS20060 () | 4010829..4011569 | + | 741 | WP_001066942.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| CF57_RS20065 () | 4011854..4012831 | - | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| CF57_RS20080 () | 4013617..4014348 | + | 732 | WP_001617898.1 | hypothetical protein | - |
| CF57_RS27875 () | 4014421..4014558 | + | 138 | WP_001380077.1 | hypothetical protein | - |
| CF57_RS25685 () | 4014717..4014965 | - | 249 | Protein_3825 | abortive infection family protein | - |
| CF57_RS20085 () | 4015023..4015720 | + | 698 | Protein_3826 | IS1 family transposase IS1R | Transposase |
| CF57_RS26695 () | 4015760..4015897 | + | 138 | WP_200869131.1 | hypothetical protein | - |
| CF57_RS20090 () | 4015909..4016955 | + | 1047 | WP_000192349.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| CF57_RS20095 () | 4017064..4017996 | - | 933 | WP_025269838.1 | homocysteine S-methyltransferase | - |
| CF57_RS20100 () | 4017983..4019386 | - | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| CF57_RS20105 () | 4019594..4020610 | + | 1017 | WP_012372828.1 | IS5 family transposase IS5D | Transposase |
| CF57_RS20110 () | 4020757..4020921 | - | 165 | Protein_3832 | pdcB | - |
| CF57_RS20115 () | 4020949..4021128 | - | 180 | WP_001513661.1 | hypothetical protein | - |
| CF57_RS20120 () | 4021133..4021513 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| CF57_RS20125 () | 4021513..4021734 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| CF57_RS20130 () | 4021917..4023473 | + | 1557 | WP_025269840.1 | type I restriction-modification system subunit M | - |
| CF57_RS20135 () | 4023470..4024684 | + | 1215 | WP_025269841.1 | restriction endonuclease subunit S | - |
| CF57_RS20140 () | 4024806..4027922 | + | 3117 | WP_025269842.1 | HsdR family type I site-specific deoxyribonuclease | - |
| CF57_RS20145 () | 4028136..4028833 | + | 698 | Protein_3839 | IS1 family transposase IS1R | Transposase |
| CF57_RS20150 () | 4028970..4029902 | - | 933 | WP_000991832.1 | hypothetical protein | - |
| CF57_RS20155 () | 4029906..4030901 | - | 996 | WP_000246636.1 | hypothetical protein | - |
| CF57_RS20160 () | 4031366..4033504 | + | 2139 | WP_000350635.1 | AAA family ATPase | - |
| CF57_RS20165 () | 4033666..4034082 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CF57_RS20170 () | 4034079..4034309 | - | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| CF57_RS20175 () | 4034615..4036695 | + | 2081 | Protein_3845 | hypothetical protein | - |
| CF57_RS20190 () | 4038029..4039069 | + | 1041 | Protein_3847 | hypothetical protein | - |
| CF57_RS20195 () | 4039332..4040465 | + | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| CF57_RS20200 () | 4040485..4040769 | + | 285 | WP_000642771.1 | hypothetical protein | - |
| CF57_RS20205 () | 4040766..4040963 | - | 198 | WP_000215657.1 | hypothetical protein | - |
| CF57_RS20210 () | 4041194..4042183 | - | 990 | Protein_3851 | IS30 family transposase IS30D | Transposase |
| CF57_RS20215 () | 4042248..4043144 | + | 897 | Protein_3852 | IS3 family transposase ISEhe3 | Transposase |
| CF57_RS20220 () | 4043246..4043527 | + | 282 | WP_000639434.1 | hypothetical protein | - |
| CF57_RS26715 () | 4043628..4044325 | - | 698 | Protein_3854 | IS1 family transposase IS1R | Transposase |
| CF57_RS20235 () | 4044435..4045760 | + | 1326 | WP_021512928.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| CF57_RS20240 () | 4045909..4046613 | - | 705 | WP_001505086.1 | IS6 family transposase IS26 | Transposase |
| CF57_RS20245 () | 4046679..4047110 | + | 432 | WP_001707302.1 | hypothetical protein | - |
| CF57_RS20250 () | 4047107..4047898 | + | 792 | WP_000016494.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| CF57_RS20255 () | 4048036..4048311 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| CF57_RS20260 () | 4048305..4048949 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
| CF57_RS20265 () | 4049171..4050142 | + | 972 | WP_001103691.1 | hypothetical protein | - |
| CF57_RS20270 () | 4050147..4050539 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| CF57_RS20275 () | 4050544..4051815 | - | 1272 | WP_025269845.1 | Y-family DNA polymerase | - |
| CF57_RS20280 () | 4051815..4052252 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CF57_RS20285 () | 4052249..4052497 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| CF57_RS20290 () | 4052915..4053817 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| CF57_RS26725 () | 4053821..4054125 | + | 305 | Protein_3867 | hypothetical protein | - |
| CF57_RS20300 () | 4054202..4054885 | + | 684 | WP_000086185.1 | DNA methylase | - |
| CF57_RS20305 () | 4054886..4055107 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| CF57_RS20310 () | 4055121..4055555 | + | 435 | WP_025269846.1 | DUF1380 family protein | - |
| CF57_RS20315 () | 4055600..4056370 | + | 771 | WP_025269847.1 | hypothetical protein | - |
| CF57_RS20320 () | 4056448..4057560 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| CF57_RS20330 () | 4058259..4058561 | + | 303 | WP_072128865.1 | antirestriction protein | - |
| CF57_RS20335 () | 4058608..4059029 | + | 422 | Protein_3874 | DUF1380 family protein | - |
| CF57_RS20340 () | 4059026..4059217 | + | 192 | WP_025269849.1 | hypothetical protein | - |
| CF57_RS27695 () | 4059431..4059586 | + | 156 | WP_001744062.1 | hypothetical protein | - |
| CF57_RS20345 () | 4060250..4060480 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| CF57_RS20350 () | 4060532..4061893 | + | 1362 | WP_000199439.1 | DUF3560 domain-containing protein | - |
| CF57_RS20355 () | 4061941..4062504 | + | 564 | WP_001315564.1 | class I SAM-dependent methyltransferase | - |
| CF57_RS20360 () | 4062530..4062736 | + | 207 | WP_001774176.1 | hypothetical protein | - |
| CF57_RS26730 () | 4062655..4062906 | + | 252 | WP_071579736.1 | hypothetical protein | - |
| CF57_RS27880 () | 4063147..4063353 | + | 207 | WP_000275853.1 | hypothetical protein | - |
| CF57_RS20375 () | 4063379..4063918 | + | 540 | WP_000290839.1 | single-stranded DNA-binding protein | - |
| CF57_RS20380 () | 4063981..4064214 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| CF57_RS20385 () | 4064280..4066238 | + | 1959 | WP_025269850.1 | ParB/RepB/Spo0J family partition protein | - |
| CF57_RS20390 () | 4066293..4066727 | + | 435 | WP_001470779.1 | conjugation system SOS inhibitor PsiB | - |
| CF57_RS20395 () | 4066724..4067443 | + | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| CF57_RS27700 () | 4067455..4067643 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 4067455..4067679 | + | 225 | NuclAT_0 | - | - |
| - () | 4067455..4067679 | + | 225 | NuclAT_0 | - | - |
| - () | 4067455..4067679 | + | 225 | NuclAT_0 | - | - |
| - () | 4067455..4067679 | + | 225 | NuclAT_0 | - | - |
| CF57_RS20405 () | 4067723..4067881 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CF57_RS27885 () | 4068176..4068331 | + | 156 | WP_001380190.1 | hypothetical protein | - |
| CF57_RS27890 () | 4068572..4068778 | + | 207 | WP_000547974.1 | hypothetical protein | - |
| CF57_RS20420 () | 4068803..4069090 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| CF57_RS20425 () | 4069209..4070030 | + | 822 | WP_025269852.1 | DUF945 domain-containing protein | - |
| CF57_RS20430 () | 4070327..4070836 | - | 510 | WP_025269853.1 | hypothetical protein | VF |
| CF57_RS20435 () | 4071251..4071634 | + | 384 | WP_025269854.1 | relaxosome protein TraM | - |
| CF57_RS20440 () | 4071825..4072511 | + | 687 | WP_025269855.1 | PAS domain-containing protein | - |
| CF57_RS20445 () | 4072605..4072832 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| CF57_RS20450 () | 4072866..4073228 | + | 363 | WP_025269856.1 | type IV conjugative transfer system pilin TraA | - |
| CF57_RS20455 () | 4073233..4073544 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| CF57_RS20460 () | 4073566..4074132 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| CF57_RS20465 () | 4074143..4074847 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|