MGE detailed information
MGE type: Prophage MGE length: 57255 bp
Accession: NZ_CP007230 Location: 3755574..3812828 Organism: Yersinia similis strain Y_sim_228 Replicon: chromosome
Accession: NZ_CP007230 Location: 3755574..3812828 Organism: Yersinia similis strain Y_sim_228 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BF17_RS17015 () | 3750597..3751202 | - | 606 | WP_025383603.1 | NAD(P)H:quinone oxidoreductase | - |
| BF17_RS17020 () | 3751760..3752938 | + | 1179 | WP_025383604.1 | N-acetylneuraminate epimerase | - |
| BF17_RS17025 () | 3753082..3754497 | - | 1416 | WP_174407879.1 | D-serine/D-alanine/glycine transporter | - |
| BF17_RS17035 () | 3755574..3756128 | + | 555 | WP_025383606.1 | outer membrane beta-barrel protein | - |
| BF17_RS17045 () | 3756471..3756725 | + | 255 | WP_025383607.1 | hypothetical protein | - |
| BF17_RS17050 () | 3756753..3757081 | - | 329 | Protein_3261 | GlpM family protein | - |
| BF17_RS17055 () | 3757210..3757434 | - | 225 | WP_025383608.1 | DUF2594 family protein | - |
| BF17_RS17060 () | 3758048..3758704 | + | 657 | WP_025383609.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| BF17_RS17065 () | 3758697..3760529 | + | 1833 | WP_025383610.1 | excinuclease ABC subunit UvrC | - |
| BF17_RS17070 () | 3760588..3761136 | + | 549 | WP_002220475.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| BF17_RS17090 () | 3761682..3762704 | - | 1023 | WP_025383611.1 | tyrosine-type recombinase/integrase | - |
| BF17_RS17095 () | 3762673..3762919 | - | 247 | Protein_3267 | DUF4224 domain-containing protein | - |
| BF17_RS17100 () | 3763104..3763859 | - | 756 | Protein_3268 | hypothetical protein | - |
| BF17_RS17105 () | 3763927..3764220 | - | 294 | WP_025383613.1 | hypothetical protein | - |
| BF17_RS17110 () | 3764431..3764784 | - | 354 | WP_025383614.1 | hypothetical protein | - |
| BF17_RS17115 () | 3764777..3765040 | - | 264 | WP_025383615.1 | stationary-phase-induced ribosome-associated protein | - |
| BF17_RS17120 () | 3765024..3765890 | - | 867 | WP_025383616.1 | hypothetical protein | - |
| BF17_RS17125 () | 3766237..3766473 | - | 237 | WP_025383617.1 | hypothetical protein | - |
| BF17_RS17130 () | 3766505..3766852 | - | 348 | WP_144236087.1 | hypothetical protein | - |
| BF17_RS25855 () | 3766824..3767669 | - | 846 | WP_025383619.1 | hypothetical protein | - |
| BF17_RS17140 () | 3767680..3768306 | - | 627 | WP_038402215.1 | phage-like protein | - |
| BF17_RS17145 () | 3768309..3768737 | - | 429 | WP_025383621.1 | hypothetical protein | - |
| BF17_RS17150 () | 3768734..3769873 | - | 1140 | WP_025383622.1 | hypothetical protein | - |
| BF17_RS17155 () | 3769918..3771033 | - | 1116 | WP_158499219.1 | hypothetical protein | - |
| BF17_RS22890 () | 3770994..3771314 | - | 321 | WP_048677291.1 | hypothetical protein | - |
| BF17_RS17160 () | 3771301..3772104 | - | 804 | WP_144236123.1 | phage recombination protein Bet | - |
| BF17_RS17165 () | 3772370..3772771 | - | 402 | WP_144236088.1 | hypothetical protein | - |
| BF17_RS17170 () | 3772787..3773293 | - | 507 | WP_081761339.1 | hypothetical protein | - |
| BF17_RS17180 () | 3773626..3773895 | - | 270 | WP_025383627.1 | KTSC domain-containing protein | - |
| BF17_RS17185 () | 3773980..3774225 | - | 246 | WP_011192248.1 | hypothetical protein | - |
| BF17_RS17190 () | 3774503..3775057 | - | 555 | WP_025383628.1 | zinc ribbon domain-containing protein | - |
| BF17_RS17195 () | 3775068..3775754 | - | 687 | WP_011192250.1 | LexA family transcriptional regulator | - |
| BF17_RS17200 () | 3775879..3776124 | + | 246 | WP_025383629.1 | hypothetical protein | - |
| BF17_RS17205 () | 3776142..3776504 | + | 363 | WP_011192252.1 | hypothetical protein | - |
| BF17_RS17210 () | 3776501..3776680 | + | 180 | WP_025383630.1 | hypothetical protein | - |
| BF17_RS22895 () | 3776689..3777534 | + | 846 | WP_025383631.1 | hypothetical protein | - |
| BF17_RS17220 () | 3777538..3778314 | + | 777 | WP_011192254.1 | hypothetical protein | - |
| BF17_RS17225 () | 3778318..3779454 | + | 1137 | WP_025383632.1 | recombination-associated protein RdgC | - |
| BF17_RS17230 () | 3779454..3779801 | + | 348 | WP_011192256.1 | hypothetical protein | - |
| BF17_RS17235 () | 3779798..3780724 | + | 927 | WP_011192257.1 | site-specific DNA-methyltransferase | - |
| BF17_RS17240 () | 3780721..3781596 | + | 876 | WP_011192258.1 | phage N-6-adenine-methyltransferase | - |
| BF17_RS17245 () | 3781636..3783327 | + | 1692 | WP_071825502.1 | DNA cytosine methyltransferase | - |
| BF17_RS17250 () | 3783324..3783971 | + | 648 | WP_011192260.1 | DUF1367 family protein | - |
| BF17_RS17255 () | 3783973..3784293 | + | 321 | WP_038402219.1 | DUF1364 domain-containing protein | - |
| BF17_RS17260 () | 3784365..3785300 | + | 936 | WP_011192261.1 | hypothetical protein | - |
| BF17_RS17265 () | 3785297..3785743 | + | 447 | WP_025383635.1 | VRR-NUC domain-containing protein | - |
| BF17_RS17270 () | 3785881..3786603 | + | 723 | WP_081761375.1 | nucleotide-binding protein | - |
| BF17_RS17275 () | 3786693..3787502 | + | 810 | WP_025383637.1 | hypothetical protein | - |
| BF17_RS17280 () | 3787675..3787887 | + | 213 | WP_011192264.1 | class II holin family protein | - |
| BF17_RS17285 () | 3787893..3788375 | + | 483 | WP_025383638.1 | lysozyme | - |
| BF17_RS17290 () | 3788507..3789025 | + | 519 | WP_025383639.1 | hypothetical protein | - |
| BF17_RS17295 () | 3789029..3789217 | + | 189 | WP_025383640.1 | hypothetical protein | - |
| BF17_RS23995 () | 3789243..3789683 | + | 441 | WP_025383641.1 | DUF2829 domain-containing protein | - |
| BF17_RS17305 () | 3789749..3790606 | + | 858 | WP_011192268.1 | hypothetical protein | - |
| BF17_RS17310 () | 3790645..3792309 | + | 1665 | WP_025383644.1 | terminase | - |
| BF17_RS17315 () | 3792309..3794429 | + | 2121 | WP_011192270.1 | hypothetical protein | - |
| BF17_RS17320 () | 3794699..3795748 | + | 1050 | WP_025383645.1 | hypothetical protein | - |
| BF17_RS17325 () | 3795808..3797031 | + | 1224 | WP_011192272.1 | N4-gp56 family major capsid protein | - |
| BF17_RS17330 () | 3797109..3797492 | + | 384 | WP_025383646.1 | hypothetical protein | - |
| BF17_RS17335 () | 3797558..3798010 | + | 453 | WP_025383647.1 | hypothetical protein | - |
| BF17_RS17340 () | 3798013..3798609 | + | 597 | WP_011192275.1 | hypothetical protein | - |
| BF17_RS17345 () | 3798609..3799262 | + | 654 | WP_011192276.1 | hypothetical protein | - |
| BF17_RS22900 () | 3799259..3801376 | + | 2118 | WP_025383648.1 | prophage tail fiber N-terminal domain-containing protein | - |
| BF17_RS17360 () | 3801385..3801846 | + | 462 | WP_144236089.1 | tail fiber assembly protein | - |
| BF17_RS17365 () | 3801859..3802185 | - | 327 | WP_011192279.1 | DUF1493 family protein | - |
| BF17_RS17370 () | 3802179..3802643 | - | 465 | WP_011192280.1 | hypothetical protein | - |
| BF17_RS17375 () | 3803057..3803869 | - | 813 | Protein_3322 | baseplate J/gp47 family protein | - |
| BF17_RS17380 () | 3803869..3804225 | - | 357 | WP_025383651.1 | GPW/gp25 family protein | - |
| BF17_RS17385 () | 3804222..3804857 | - | 636 | WP_025383652.1 | phage baseplate assembly protein V | - |
| BF17_RS17390 () | 3805086..3805373 | + | 288 | Protein_3325 | type VI secretion system tube protein Hcp | - |
| BF17_RS17395 () | 3805439..3805747 | + | 309 | WP_019083256.1 | transposase | - |
| BF17_RS17400 () | 3805693..3806586 | + | 894 | Protein_3327 | IS3 family transposase | - |
| BF17_RS24005 () | 3806587..3806811 | + | 225 | WP_144236091.1 | type VI secretion system tube protein Hcp | - |
| BF17_RS17405 () | 3806822..3807487 | + | 666 | WP_012413674.1 | hypothetical protein | - |
| BF17_RS17415 () | 3807681..3808085 | - | 405 | WP_025383657.1 | phage virion morphogenesis protein | - |
| BF17_RS17420 () | 3808531..3809499 | + | 969 | WP_158499220.1 | IS630 family transposase | - |
| BF17_RS17425 () | 3809623..3809847 | + | 225 | WP_025383659.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| BF17_RS17430 () | 3809844..3810218 | + | 375 | WP_025383660.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| BF17_RS17435 () | 3810281..3811038 | + | 758 | Protein_3334 | phage baseplate protein | - |
| BF17_RS17440 () | 3811559..3812254 | - | 696 | Protein_3335 | hypothetical protein | - |
| BF17_RS17450 () | 3812586..3812828 | - | 243 | WP_025383662.1 | phage virion morphogenesis protein | - |
| BF17_RS17455 () | 3813567..3817346 | + | 3780 | WP_025383663.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|