MGE detailed information
MGE type: Prophage MGE length: 90146 bp
Accession: NZ_CP007037 Location: 1345139..1435284 Organism: Shigella flexneri G1663 Replicon: chromosome
Accession: NZ_CP007037 Location: 1345139..1435284 Organism: Shigella flexneri G1663 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SF2A_RS07225 () | 1340834..1341598 | + | 765 | WP_005049729.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase | - |
| SF2A_RS07230 () | 1341625..1342182 | + | 558 | WP_001278727.1 | HTH-type transcriptional regulator PuuR | - |
| SF2A_RS07235 () | 1342332..1343819 | + | 1488 | WP_001009102.1 | aldehyde dehydrogenase PuuC | - |
| SF2A_RS07240 () | 1343821..1345101 | + | 1281 | WP_000134885.1 | gamma-glutamylputrescine oxidase | - |
| SF2A_RS07245 () | 1345139..1346404 | + | 1266 | WP_000069252.1 | hypothetical protein | VF |
| SF2A_RS07250 () | 1346524..1347501 | - | 978 | WP_005049736.1 | hypothetical protein | VF |
| SF2A_RS07255 () | 1347668..1348336 | + | 669 | WP_000511025.1 | phage shock protein PspA | - |
| SF2A_RS07260 () | 1348390..1348614 | + | 225 | WP_001274964.1 | envelope stress response membrane protein PspB | - |
| SF2A_RS07265 () | 1348614..1348973 | + | 360 | WP_000907387.1 | envelope stress response membrane protein PspC | - |
| SF2A_RS07270 () | 1348982..1349203 | + | 222 | WP_001359759.1 | phage shock protein PspD | - |
| SF2A_RS07275 () | 1349246..1349593 | + | 348 | WP_000974117.1 | thiosulfate sulfurtransferase PspE | - |
| SF2A_RS07280 () | 1349805..1350908 | + | 1104 | Protein_1337 | alpha-amylase family glycosyl hydrolase | - |
| SF2A_RS07290 () | 1350964..1351661 | + | 698 | WP_225620286.1 | IS1 family transposase IS1X2 | Transposase |
| SF2A_RS07295 () | 1351679..1352260 | + | 582 | Protein_1339 | glucosylglycerate phosphorylase | - |
| SF2A_RS27055 () | 1352274..1353557 | + | 1284 | Protein_1340 | ABC transporter substrate-binding protein | - |
| SF2A_RS07310 () | 1353578..1354459 | + | 882 | WP_001080790.1 | sugar ABC transporter permease | - |
| SF2A_RS07315 () | 1354446..1355288 | + | 843 | WP_000224665.1 | carbohydrate ABC transporter permease | - |
| SF2A_RS07320 () | 1355319..1356371 | + | 1053 | WP_000737347.1 | zinc-binding alcohol dehydrogenase | - |
| SF2A_RS07325 () | 1356389..1357164 | + | 776 | Protein_1344 | sugar phosphate isomerase/epimerase | - |
| SF2A_RS07330 () | 1357174..1358228 | + | 1055 | Protein_1345 | Gfo/Idh/MocA family oxidoreductase | - |
| SF2A_RS07335 () | 1358225..1360492 | + | 2268 | WP_000197995.1 | kojibiose phosphorylase | - |
| SF2A_RS07340 () | 1360489..1361148 | + | 660 | WP_000775779.1 | beta-phosphoglucomutase | - |
| SF2A_RS07345 () | 1361162..1362243 | + | 1082 | Protein_1348 | hypothetical protein | VF |
| SF2A_RS07350 () | 1362316..1363188 | + | 873 | Protein_1349 | monomeric porin OmpG | - |
| SF2A_RS07360 () | 1363299..1364297 | - | 999 | WP_000075383.1 | LacI family DNA-binding transcriptional regulator | - |
| SF2A_RS07365 () | 1364453..1365850 | + | 1398 | WP_000825769.1 | YcjX family protein | - |
| SF2A_RS07370 () | 1365847..1366908 | + | 1062 | WP_000138745.1 | YcjF family protein | - |
| SF2A_RS07375 () | 1367056..1368597 | + | 1542 | WP_001306544.1 | hypothetical protein | VF |
| SF2A_RS07380 () | 1368641..1369147 | - | 507 | WP_000084387.1 | thiol peroxidase | - |
| SF2A_RS07385 () | 1369266..1370231 | + | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
| SF2A_RS07390 () | 1370206..1370934 | - | 729 | WP_005049761.1 | murein tripeptide amidase MpaA | - |
| SF2A_RS07395 () | 1371225..1371863 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| SF2A_RS07400 () | 1371881..1372813 | - | 933 | Protein_1358 | alpha/beta hydrolase | - |
| SF2A_RS07410 () | 1372813..1373733 | - | 921 | WP_005091733.1 | alpha/beta hydrolase | - |
| SF2A_RS07415 () | 1373871..1374305 | + | 435 | Protein_1360 | hypothetical protein | VF |
| SF2A_RS27070 () | 1375610..1376020 | + | 411 | Protein_1362 | YdaU family protein | - |
| SF2A_RS30755 () | 1377786..1377955 | + | 170 | Protein_1364 | hypothetical protein | - |
| SF2A_RS07445 () | 1378101..1378847 | + | 747 | WP_000788998.1 | ATP-binding protein | - |
| SF2A_RS07450 () | 1378862..1379284 | + | 423 | WP_001118167.1 | DUF977 family protein | - |
| SF2A_RS07455 () | 1379342..1379698 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| SF2A_RS07460 () | 1379791..1380009 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| SF2A_RS07465 () | 1380011..1380376 | + | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| SF2A_RS07470 () | 1380373..1381038 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| SF2A_RS07475 () | 1381038..1381403 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 1381788..1381846 | - | 59 | - | - | Antitoxin Detail |
| SF2A_RS07485 () | 1381858..1382013 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| SF2A_RS27075 () | 1382519..1383203 | - | 685 | Protein_1373 | IS1 family transposase | - |
| SF2A_RS07505 () | 1383337..1383936 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| SF2A_RS07510 () | 1383936..1384226 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| SF2A_RS07515 () | 1384223..1384777 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| SF2A_RS07520 () | 1384930..1385103 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| SF2A_RS27085 () | 1385165..1386321 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| SF2A_RS07535 () | 1386392..1386874 | + | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| SF2A_RS07560 () | 1387508..1389112 | + | 1605 | WP_000615489.1 | hypothetical protein ; Integrase | Integrase |
| SF2A_RS07570 () | 1389933..1391101 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| SF2A_RS27095 () | 1391095..1391187 | + | 93 | Protein_1382 | Rha family transcriptional regulator | - |
| SF2A_RS07580 () | 1391246..1391943 | + | 698 | WP_227804319.1 | IS1 family transposase IS1X2 | Transposase |
| SF2A_RS07585 () | 1391959..1392864 | + | 906 | Protein_1384 | IS3 family transposase ISSd1 | Transposase |
| SF2A_RS07590 () | 1392892..1393281 | + | 390 | WP_047205378.1 | hypothetical protein | - |
| SF2A_RS07595 () | 1393284..1393828 | + | 545 | Protein_1386 | tail fiber assembly protein | - |
| SF2A_RS07600 () | 1393852..1395141 | + | 1290 | WP_064756531.1 | prophage tail fiber N-terminal domain-containing protein | - |
| SF2A_RS26245 () | 1395071..1395695 | + | 625 | Protein_1388 | DUF4376 domain-containing protein | - |
| SF2A_RS07610 () | 1395896..1396753 | - | 858 | WP_000968134.1 | hypothetical protein | ARG |
| SF2A_RS07615 () | 1396750..1397607 | - | 858 | WP_001101728.1 | hypothetical protein | ARG |
| SF2A_RS07620 () | 1397604..1398431 | - | 828 | WP_000983722.1 | hypothetical protein | VF |
| SF2A_RS07625 () | 1398431..1399345 | - | 915 | WP_000555620.1 | hypothetical protein | VF |
| SF2A_RS27105 () | 1399777..1400418 | - | 642 | Protein_1393 | hypothetical protein ; Integrase | Integrase |
| SF2A_RS07640 () | 1400472..1401169 | + | 698 | WP_227804319.1 | IS1 family transposase IS1X2 | Transposase |
| SF2A_RS27110 () | 1401186..1401356 | - | 171 | Protein_1395 | DUF3596 domain-containing protein | - |
| SF2A_RS07645 () | 1401358..1401525 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| SF2A_RS27115 () | 1401573..1402782 | - | 1210 | Protein_1397 | IS3 family transposase IS629 | Transposase |
| SF2A_RS07665 () | 1402857..1403954 | - | 1098 | WP_001173294.1 | AAA family ATPase | - |
| SF2A_RS07670 () | 1403960..1404220 | - | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| SF2A_RS27120 () | 1404319..1405475 | + | 1157 | Protein_1400 | IS3 family transposase IS600 | Transposase |
| SF2A_RS07685 () | 1405532..1406947 | - | 1416 | Protein_1401 | exodeoxyribonuclease VIII | - |
| SF2A_RS07690 () | 1407047..1407322 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| SF2A_RS07695 () | 1407397..1407567 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| SF2A_RS07700 () | 1407567..1407788 | - | 222 | WP_000560226.1 | killing protein KilR | - |
| SF2A_RS07715 () | 1409135..1410023 | - | 889 | Protein_1406 | Rha family transcriptional regulator | - |
| SF2A_RS30255 () | 1411247..1411627 | + | 381 | Protein_1407 | IS66 family transposase ISSfl3 | Transposase |
| SF2A_RS30260 () | 1411629..1411796 | + | 168 | Protein_1408 | IS66 family transposase ISSfl3 | Transposase |
| SF2A_RS07730 () | 1411747..1412370 | + | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| SF2A_RS30760 () | 1412376..1412480 | + | 105 | Protein_1410 | tail fiber assembly protein | - |
| SF2A_RS07740 () | 1412550..1414265 | - | 1716 | WP_128568580.1 | hypothetical protein | VF |
| SF2A_RS07750 () | 1414807..1415504 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| SF2A_RS07755 () | 1415784..1416230 | + | 447 | Protein_1413 | metallophosphoesterase | - |
| SF2A_RS27135 () | 1416295..1417451 | + | 1157 | WP_154810360.1 | IS3 family transposase IS600 | Transposase |
| SF2A_RS07770 () | 1417495..1417683 | + | 189 | Protein_1415 | serine/threonine-protein phosphatase | - |
| SF2A_RS07775 () | 1417708..1417899 | - | 192 | WP_005049838.1 | YebW family protein | - |
| SF2A_RS07780 () | 1418004..1418240 | - | 237 | WP_001295499.1 | YebV family protein | - |
| SF2A_RS07785 () | 1418358..1419797 | - | 1440 | Protein_1418 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| SF2A_RS07790 () | 1419877..1422497 | - | 2621 | Protein_1419 | hypothetical protein | VF |
| SF2A_RS07795 () | 1422466..1423749 | - | 1284 | WP_047343242.1 | membrane integrity lipid transport subunit YebS | - |
| SF2A_RS07800 () | 1423879..1424376 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| SF2A_RS07805 () | 1424473..1425171 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| SF2A_RS07810 () | 1425191..1427239 | + | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| SF2A_RS07815 () | 1427431..1428312 | + | 882 | WP_000984517.1 | protease HtpX | - |
| SF2A_RS07820 () | 1428358..1429731 | - | 1374 | WP_001127218.1 | MFS transporter | - |
| SF2A_RS07825 () | 1429908..1430699 | + | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| SF2A_RS07830 () | 1430842..1431081 | - | 240 | WP_001211010.1 | YobH family protein | - |
| SF2A_RS07835 () | 1431240..1431383 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| SF2A_RS07840 () | 1431458..1431745 | + | 288 | WP_001006860.1 | YebO family protein | - |
| SF2A_RS07850 () | 1432415..1432558 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| SF2A_RS07855 () | 1432571..1432780 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| SF2A_RS07860 () | 1432946..1433755 | + | 810 | WP_000010140.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| SF2A_RS07865 () | 1433752..1434318 | - | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| SF2A_RS07885 () | 1435507..1435983 | - | 477 | WP_000156246.1 | DUF986 family protein | - |
| SF2A_RS07890 () | 1436038..1436889 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| SF2A_RS07895 () | 1436902..1437702 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| SF2A_RS07900 () | 1437765..1438736 | - | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|